Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09003 * 109.49802 * 299.65749 * 6 4 3 8 8 C 1.53037 * 109.50194 * 179.55898 * 6 4 3 9 9 C 1.53042 * 109.54040 * 178.68293 * 8 6 4 10 10 C 1.53195 * 109.31239 * 61.36211 * 9 8 6 11 11 N 1.46924 * 108.77571 * 305.37040 * 10 9 8 12 12 C 1.34784 * 120.62770 * 233.62833 * 11 10 9 13 13 O 1.21278 * 119.99943 * 179.97438 * 12 11 10 14 14 C 1.50707 * 119.99807 * 359.97438 * 12 11 10 15 15 N 1.46899 * 109.47017 * 179.97438 * 14 12 11 16 16 C 1.46895 * 110.99950 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.46863 * 35.00789 * 16 15 14 18 18 C 1.53001 * 109.47344 * 275.00412 * 16 15 14 19 19 C 1.50701 * 109.46938 * 155.00103 * 16 15 14 20 20 H 1.08001 * 120.00067 * 0.02562 * 19 16 15 21 21 C 1.37879 * 119.99889 * 180.02562 * 19 16 15 22 22 N 1.31512 * 120.00052 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99794 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47443 * 59.99944 * 23 21 19 25 25 H 1.48501 * 109.47035 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47187 * 299.99932 * 23 21 19 27 27 C 1.46916 * 118.74253 * 53.60350 * 11 10 9 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 30 30 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09001 * 109.46060 * 298.70346 * 8 6 4 34 34 H 1.08999 * 109.46033 * 58.65740 * 8 6 4 35 35 H 1.09007 * 109.49478 * 301.41326 * 9 8 6 36 36 H 1.09004 * 109.52413 * 181.33514 * 9 8 6 37 37 H 1.08998 * 109.58279 * 185.57571 * 10 9 8 38 38 H 1.09007 * 109.58286 * 65.15777 * 10 9 8 39 39 H 1.08992 * 109.46952 * 300.00050 * 14 12 11 40 40 H 1.09002 * 109.46830 * 59.99733 * 14 12 11 41 41 H 1.00902 * 110.99788 * 56.04696 * 15 14 12 42 42 H 1.09000 * 109.47034 * 180.02562 * 18 16 15 43 43 H 1.08996 * 109.47034 * 299.99919 * 18 16 15 44 44 H 1.08998 * 109.47293 * 60.00419 * 18 16 15 45 45 H 0.96997 * 119.99700 * 179.97438 * 22 21 19 46 46 H 1.09007 * 109.58891 * 186.60114 * 27 11 10 47 47 H 1.09001 * 109.70220 * 66.25087 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5890 3.4723 -0.8843 8 6 5.4490 2.8580 0.0148 9 6 6.0351 4.2715 -0.0121 10 6 5.5829 5.0313 1.2389 11 7 4.1163 4.9875 1.3145 12 6 3.4006 6.1234 1.4339 13 8 2.1903 6.0740 1.4949 14 6 4.1043 7.4548 1.4918 15 7 3.1104 8.5288 1.6210 16 6 3.7615 9.8442 1.6811 17 1 4.6450 9.8417 1.0426 18 6 4.1754 10.1430 3.1234 19 6 2.8004 10.9026 1.2047 20 1 1.8053 10.6259 0.8892 21 6 3.1915 12.2244 1.1715 22 7 4.4035 12.5613 1.5551 23 14 1.9999 13.5364 0.5816 24 1 0.7969 13.5401 1.4522 25 1 2.6582 14.8662 0.6422 26 1 1.5972 13.2462 -0.8180 27 6 3.4446 3.6822 1.2568 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 5.7805 2.3445 0.9173 34 1 5.7892 2.3070 -0.8620 35 1 5.6840 4.7941 -0.9019 36 1 7.1235 4.2142 -0.0295 37 1 5.9149 6.0677 1.1768 38 1 6.0087 4.5615 2.1256 39 1 4.7747 7.4743 2.3509 40 1 4.6803 7.6013 0.5780 41 1 2.5205 8.3805 2.4261 42 1 4.6582 11.1192 3.1680 43 1 3.2920 10.1454 3.7618 44 1 4.8707 9.3775 3.4680 45 1 4.6787 13.4911 1.5314 46 1 2.3655 3.8283 1.2067 47 1 3.6937 3.1012 2.1448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602862244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = -126.265285 kcal Electronic energy + Delta-G solvation = -26378.552062 eV Core-core repulsion = 22561.189767 eV Total energy + Delta-G solvation = -3817.362294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08147 -39.88064 -37.64734 -36.73428 -35.66488 -33.27945 -32.45085 -32.24401 -31.41278 -29.17371 -26.23021 -25.52896 -25.12084 -23.88841 -23.29271 -21.95582 -20.49050 -20.18178 -19.07248 -17.94912 -17.25486 -16.97582 -16.47359 -16.23013 -15.65252 -15.44205 -14.91897 -14.64561 -14.34664 -14.21483 -13.98317 -13.75275 -13.47812 -13.30191 -13.09304 -12.90467 -12.55030 -12.52890 -12.26316 -11.96442 -11.79536 -11.68782 -11.58902 -11.28470 -11.20058 -10.94515 -10.90443 -10.85027 -10.81112 -10.70081 -10.55057 -10.15018 -9.96124 -9.49756 -8.99099 -8.72347 -8.34959 -7.26037 -5.97986 -4.00473 1.85584 2.30554 2.87893 2.96508 3.37456 3.40381 3.45191 4.22342 4.31092 4.45642 4.46668 4.58419 4.62698 4.67667 4.78763 4.83311 4.90648 4.92421 5.18128 5.29323 5.33488 5.34370 5.37462 5.43556 5.47252 5.55449 5.58450 5.64761 5.69812 5.77772 5.82683 5.85310 5.98488 6.13802 6.41269 6.64206 6.81605 7.04633 7.24185 7.42484 7.43863 7.72914 7.89146 8.24086 8.38594 8.52240 8.60542 9.07217 9.64788 11.09281 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.002586 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.755002 B =10823.364093 C =11656.398468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.472 3.528 5 O -0.508 6.508 6 C -0.096 4.096 7 H 0.115 0.885 8 C -0.103 4.103 9 C -0.135 4.135 10 C 0.104 3.896 11 N -0.621 5.621 12 C 0.517 3.483 13 O -0.519 6.519 14 C 0.046 3.954 15 N -0.669 5.669 16 C 0.213 3.787 17 H 0.034 0.966 18 C -0.171 4.171 19 C -0.494 4.494 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.277 1.277 27 C 0.125 3.875 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.336 0.664 42 H 0.091 0.909 43 H 0.029 0.971 44 H 0.004 0.996 45 H 0.260 0.740 46 H 0.106 0.894 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 -23.803 -1.812 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.314 3.686 5 O -0.395 6.395 6 C -0.117 4.117 7 H 0.133 0.867 8 C -0.140 4.140 9 C -0.174 4.174 10 C -0.019 4.019 11 N -0.358 5.358 12 C 0.306 3.694 13 O -0.393 6.393 14 C -0.087 4.087 15 N -0.300 5.300 16 C 0.105 3.895 17 H 0.052 0.948 18 C -0.230 4.230 19 C -0.533 4.533 20 H 0.082 0.918 21 C -0.145 4.145 22 N -0.539 5.539 23 Si 0.728 3.272 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.203 1.203 27 C 0.001 3.999 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.153 0.847 42 H 0.109 0.891 43 H 0.048 0.952 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.124 0.876 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.759 -23.904 -2.432 24.092 hybrid contribution 0.000 0.440 0.542 0.698 sum 1.760 -23.464 -1.890 23.605 Atomic orbital electron populations 1.21818 0.92421 1.02967 1.03920 1.23053 0.95610 0.80060 1.02507 1.86565 1.24342 1.32479 1.83600 1.23580 0.80643 0.92305 0.72026 1.90661 1.60503 1.43011 1.45340 1.21525 0.97341 0.89903 1.02882 0.86709 1.21434 0.91189 0.97474 1.03924 1.21960 1.01305 0.95173 0.98917 1.21813 0.79663 1.02441 0.98018 1.48154 1.06932 1.05661 1.75019 1.21158 0.87838 0.85435 0.74935 1.90678 1.13993 1.86594 1.48041 1.21829 0.95519 0.89352 1.01997 1.60601 1.20046 1.01482 1.47894 1.19216 0.94351 0.83685 0.92213 0.94782 1.22460 0.98755 1.02500 0.99297 1.21119 0.99796 0.90531 1.41829 0.91803 1.24940 0.95392 0.98559 0.95641 1.69866 1.17791 1.17759 1.48516 0.86537 0.80974 0.80343 0.79391 1.20331 1.21501 1.20263 1.21323 1.00051 0.83695 0.94782 0.91213 0.91305 0.90233 0.91259 0.91201 0.90743 0.90619 0.90783 0.89757 0.88767 0.91181 0.93418 0.88733 0.84652 0.89070 0.95156 0.97687 0.93024 0.87596 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.15 0.38 -0.58 16 2 C 0.06 0.50 6.19 37.15 0.23 0.73 16 3 O -0.35 -3.75 10.14 -39.26 -0.40 -4.15 16 4 C 0.47 5.14 7.26 36.00 0.26 5.40 16 5 O -0.51 -6.45 15.73 -18.76 -0.30 -6.74 16 6 C -0.10 -0.94 2.78 -91.65 -0.25 -1.19 16 7 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 8 C -0.10 -0.86 4.46 -26.69 -0.12 -0.98 16 9 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 10 C 0.10 0.94 6.34 -3.71 -0.02 0.91 16 11 N -0.62 -7.58 2.97 -172.77 -0.51 -8.10 16 12 C 0.52 8.45 7.74 -10.98 -0.08 8.37 16 13 O -0.52 -10.42 15.62 5.56 0.09 -10.33 16 14 C 0.05 0.79 4.31 -4.97 -0.02 0.76 16 15 N -0.67 -14.66 5.86 -109.22 -0.64 -15.30 16 16 C 0.21 5.28 2.57 -68.87 -0.18 5.10 16 17 H 0.03 0.90 7.80 -51.93 -0.40 0.50 16 18 C -0.17 -4.02 8.94 37.16 0.33 -3.69 16 19 C -0.49 -13.77 8.84 -34.44 -0.30 -14.08 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 22 N -0.90 -25.44 11.32 55.43 0.63 -24.81 16 23 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.13 1.39 5.64 -3.72 -0.02 1.37 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 32 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.85 5.93 -51.93 -0.31 0.54 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.75 7.24 -51.93 -0.38 0.38 16 40 H 0.09 1.53 7.60 -51.93 -0.39 1.14 16 41 H 0.34 7.40 8.17 -39.29 -0.32 7.07 16 42 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 43 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 44 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.11 1.38 7.01 -51.92 -0.36 1.02 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -32.50 378.37 -8.41 -40.91 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.91 Total: 3.81 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -0.06 Total: 2.38 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.53 Total: -48.20 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.61 Total: -21.22 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.50 -8.41 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.356 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds