Wall clock time and date at job start Fri Apr 10 2020 18:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09003 * 109.49802 * 299.65749 * 6 4 3 8 8 C 1.53037 * 109.50194 * 179.55898 * 6 4 3 9 9 C 1.53042 * 109.54040 * 178.68293 * 8 6 4 10 10 C 1.53195 * 109.31239 * 61.36211 * 9 8 6 11 11 N 1.46924 * 108.77571 * 305.37040 * 10 9 8 12 12 C 1.34784 * 120.62770 * 233.62833 * 11 10 9 13 13 O 1.21278 * 119.99943 * 179.97438 * 12 11 10 14 14 C 1.50707 * 119.99807 * 359.97438 * 12 11 10 15 15 N 1.46899 * 109.47017 * 179.97438 * 14 12 11 16 16 C 1.46895 * 110.99950 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.46863 * 35.00789 * 16 15 14 18 18 C 1.53001 * 109.47344 * 275.00412 * 16 15 14 19 19 C 1.50701 * 109.46938 * 155.00103 * 16 15 14 20 20 H 1.08001 * 120.00067 * 0.02562 * 19 16 15 21 21 C 1.37879 * 119.99889 * 180.02562 * 19 16 15 22 22 N 1.31512 * 120.00052 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99794 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47443 * 59.99944 * 23 21 19 25 25 H 1.48501 * 109.47035 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47187 * 299.99932 * 23 21 19 27 27 C 1.46916 * 118.74253 * 53.60350 * 11 10 9 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 30 30 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09001 * 109.46060 * 298.70346 * 8 6 4 34 34 H 1.08999 * 109.46033 * 58.65740 * 8 6 4 35 35 H 1.09007 * 109.49478 * 301.41326 * 9 8 6 36 36 H 1.09004 * 109.52413 * 181.33514 * 9 8 6 37 37 H 1.08998 * 109.58279 * 185.57571 * 10 9 8 38 38 H 1.09007 * 109.58286 * 65.15777 * 10 9 8 39 39 H 1.08992 * 109.46952 * 300.00050 * 14 12 11 40 40 H 1.09002 * 109.46830 * 59.99733 * 14 12 11 41 41 H 1.00902 * 110.99788 * 56.04696 * 15 14 12 42 42 H 1.09000 * 109.47034 * 180.02562 * 18 16 15 43 43 H 1.08996 * 109.47034 * 299.99919 * 18 16 15 44 44 H 1.08998 * 109.47293 * 60.00419 * 18 16 15 45 45 H 0.96997 * 119.99700 * 179.97438 * 22 21 19 46 46 H 1.09007 * 109.58891 * 186.60114 * 27 11 10 47 47 H 1.09001 * 109.70220 * 66.25087 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5890 3.4723 -0.8843 8 6 5.4490 2.8580 0.0148 9 6 6.0351 4.2715 -0.0121 10 6 5.5829 5.0313 1.2389 11 7 4.1163 4.9875 1.3145 12 6 3.4006 6.1234 1.4339 13 8 2.1903 6.0740 1.4949 14 6 4.1043 7.4548 1.4918 15 7 3.1104 8.5288 1.6210 16 6 3.7615 9.8442 1.6811 17 1 4.6450 9.8417 1.0426 18 6 4.1754 10.1430 3.1234 19 6 2.8004 10.9026 1.2047 20 1 1.8053 10.6259 0.8892 21 6 3.1915 12.2244 1.1715 22 7 4.4035 12.5613 1.5551 23 14 1.9999 13.5364 0.5816 24 1 0.7969 13.5401 1.4522 25 1 2.6582 14.8662 0.6422 26 1 1.5972 13.2462 -0.8180 27 6 3.4446 3.6822 1.2568 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 5.7805 2.3445 0.9173 34 1 5.7892 2.3070 -0.8620 35 1 5.6840 4.7941 -0.9019 36 1 7.1235 4.2142 -0.0295 37 1 5.9149 6.0677 1.1768 38 1 6.0087 4.5615 2.1256 39 1 4.7747 7.4743 2.3509 40 1 4.6803 7.6013 0.5780 41 1 2.5205 8.3805 2.4261 42 1 4.6582 11.1192 3.1680 43 1 3.2920 10.1454 3.7618 44 1 4.8707 9.3775 3.4680 45 1 4.6787 13.4911 1.5314 46 1 2.3655 3.8283 1.2067 47 1 3.6937 3.1012 2.1448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602862244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:07 Heat of formation + Delta-G solvation = -146.978970 kcal Electronic energy + Delta-G solvation = -26379.450274 eV Core-core repulsion = 22561.189767 eV Total energy + Delta-G solvation = -3818.260507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.95877 -40.98390 -38.66938 -37.69486 -37.36776 -34.56178 -34.07680 -32.96209 -32.17243 -30.88066 -27.60209 -27.16000 -26.31244 -25.06121 -23.98337 -22.74535 -22.13851 -21.30043 -20.12488 -18.89984 -18.51559 -18.02124 -17.79292 -17.27541 -16.98806 -16.59130 -16.55974 -15.75174 -15.53634 -15.24113 -14.92663 -14.74360 -14.69905 -14.52714 -14.23280 -13.88953 -13.63571 -13.62015 -13.49248 -13.17729 -12.96507 -12.83918 -12.72514 -12.63726 -12.50697 -12.39956 -12.14316 -12.02560 -12.00833 -11.91146 -11.70757 -11.55971 -11.55170 -11.14179 -10.71010 -10.45584 -9.74107 -8.97059 -8.08343 -6.18079 0.98167 1.45146 1.46368 1.52422 1.54507 1.63189 1.94703 2.46615 3.20175 3.41580 3.49536 3.66303 3.68400 3.80164 3.98044 3.98777 4.03673 4.08200 4.13671 4.31652 4.42281 4.43873 4.50361 4.54757 4.68807 4.74140 4.77322 4.82679 4.86341 4.89148 4.91806 5.03461 5.07871 5.09604 5.12647 5.34078 5.38130 5.40597 5.49839 5.71874 5.83085 6.23123 6.32680 6.60503 6.63769 6.75634 6.94032 7.18785 7.51261 8.96833 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.002586 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.755002 B =10823.364093 C =11656.398468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.475 3.525 5 O -0.526 6.526 6 C -0.091 4.091 7 H 0.114 0.886 8 C -0.098 4.098 9 C -0.128 4.128 10 C 0.095 3.905 11 N -0.610 5.610 12 C 0.519 3.481 13 O -0.566 6.566 14 C 0.048 3.952 15 N -0.683 5.683 16 C 0.219 3.781 17 H 0.016 0.984 18 C -0.158 4.158 19 C -0.519 4.519 20 H 0.048 0.952 21 C 0.013 3.987 22 N -0.918 5.918 23 Si 0.957 3.043 24 H -0.275 1.275 25 H -0.281 1.281 26 H -0.275 1.275 27 C 0.127 3.873 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.333 0.667 42 H 0.065 0.935 43 H 0.026 0.974 44 H 0.033 0.967 45 H 0.262 0.738 46 H 0.083 0.917 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 -24.803 -1.867 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.282 6.282 4 C 0.319 3.681 5 O -0.415 6.415 6 C -0.111 4.111 7 H 0.132 0.868 8 C -0.135 4.135 9 C -0.166 4.166 10 C -0.027 4.027 11 N -0.344 5.344 12 C 0.308 3.692 13 O -0.444 6.444 14 C -0.084 4.084 15 N -0.314 5.314 16 C 0.111 3.889 17 H 0.034 0.966 18 C -0.218 4.218 19 C -0.558 4.558 20 H 0.066 0.934 21 C -0.185 4.185 22 N -0.558 5.558 23 Si 0.783 3.217 24 H -0.201 1.201 25 H -0.206 1.206 26 H -0.201 1.201 27 C 0.003 3.997 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.150 0.850 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.737 -24.942 -2.493 25.215 hybrid contribution -0.267 0.638 0.553 0.886 sum 2.470 -24.303 -1.940 24.506 Atomic orbital electron populations 1.21843 0.90974 1.04379 1.03505 1.23307 0.96804 0.78999 1.02853 1.86573 1.24246 1.34043 1.83311 1.23714 0.80632 0.92399 0.71385 1.90648 1.60877 1.43635 1.46367 1.21505 0.98498 0.89088 1.01960 0.86838 1.21433 0.89750 0.98078 1.04284 1.21939 1.02774 0.94130 0.97741 1.22144 0.77328 1.03331 0.99859 1.48119 1.08316 1.04864 1.73105 1.20956 0.87224 0.86156 0.74850 1.90663 1.15818 1.87259 1.50642 1.21856 0.94793 0.88484 1.03280 1.60415 1.21414 1.01650 1.47966 1.18973 0.92992 0.84615 0.92305 0.96593 1.22264 0.98947 1.01973 0.98589 1.21405 0.99789 0.92017 1.42562 0.93414 1.25623 0.96905 1.00313 0.95682 1.69965 1.18877 1.18182 1.48787 0.85633 0.79113 0.78141 0.78821 1.20065 1.20640 1.20085 1.21331 0.98822 0.83301 0.96201 0.91689 0.91608 0.87905 0.90888 0.90886 0.90375 0.90276 0.91362 0.87159 0.88442 0.88983 0.91273 0.87821 0.84977 0.91574 0.95478 0.94776 0.92883 0.89822 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.29 71.98 0.74 -0.98 16 2 C 0.05 0.84 6.19 71.98 0.45 1.28 16 3 O -0.37 -7.63 10.14 -51.41 -0.52 -8.15 16 4 C 0.48 9.98 7.26 71.23 0.52 10.50 16 5 O -0.53 -12.81 15.73 21.94 0.35 -12.46 16 6 C -0.09 -1.66 2.78 -11.46 -0.03 -1.69 16 7 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 8 C -0.10 -1.41 4.46 30.62 0.14 -1.27 16 9 C -0.13 -1.57 6.08 30.67 0.19 -1.39 16 10 C 0.09 1.45 6.34 86.36 0.55 2.00 16 11 N -0.61 -14.00 2.97 -818.90 -2.43 -16.43 16 12 C 0.52 16.67 7.74 87.66 0.68 17.35 16 13 O -0.57 -23.06 15.62 -3.02 -0.05 -23.11 16 14 C 0.05 1.60 4.31 85.56 0.37 1.97 16 15 N -0.68 -30.02 5.86 -499.46 -2.93 -32.95 16 16 C 0.22 10.93 2.57 44.17 0.11 11.04 16 17 H 0.02 0.85 7.80 -2.39 -0.02 0.84 16 18 C -0.16 -7.39 8.94 71.98 0.64 -6.74 16 19 C -0.52 -29.29 8.84 25.60 0.23 -29.06 16 20 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 21 C 0.01 0.74 5.30 84.66 0.45 1.18 16 22 N -0.92 -51.95 11.32 21.45 0.24 -51.70 16 23 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 C 0.13 2.70 5.64 86.36 0.49 3.19 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.07 8.13 -2.39 -0.02 1.06 16 32 H 0.07 1.08 8.13 -2.38 -0.02 1.06 16 33 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 34 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 35 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.10 1.47 5.93 -2.39 -0.01 1.46 16 38 H 0.09 1.08 8.14 -2.38 -0.02 1.07 16 39 H 0.07 2.02 7.24 -2.39 -0.02 2.01 16 40 H 0.10 3.24 7.60 -2.39 -0.02 3.22 16 41 H 0.33 14.80 8.17 -89.69 -0.73 14.07 16 42 H 0.07 3.44 6.07 -2.39 -0.01 3.42 16 43 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16 44 H 0.03 1.34 7.45 -2.39 -0.02 1.32 16 45 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.08 2.21 7.01 -2.38 -0.02 2.20 16 47 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.20 378.37 2.42 -67.78 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.23 Total: 23.23 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.51 Total: 7.38 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -5.12 Total: -101.09 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.22 Total: -43.72 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.20 2.42 -67.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.202 kcal (2) G-P(sol) polarization free energy of solvation -70.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds