Wall clock time and date at job start Fri Apr 10 2020 18:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99599 * 2 1 4 4 O 1.20824 * 120.00298 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99581 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47504 * 324.99591 * 5 3 2 7 7 C 1.34776 * 119.99719 * 59.99716 * 6 5 3 8 8 O 1.21282 * 119.99837 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99767 * 179.97438 * 7 6 5 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 6 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46962 * 34.99990 * 11 10 9 13 13 C 1.52999 * 109.47094 * 274.99984 * 11 10 9 14 14 C 1.50696 * 109.47161 * 155.00107 * 11 10 9 15 15 H 1.08005 * 119.99735 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00295 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99693 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00152 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47060 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47124 * 119.99693 * 18 16 14 21 21 H 1.48501 * 109.46777 * 239.99619 * 18 16 14 22 22 C 1.52999 * 109.47312 * 84.99618 * 5 3 2 23 23 C 1.52999 * 109.47397 * 179.97438 * 22 5 3 24 24 C 1.53005 * 109.47169 * 300.00616 * 23 22 5 25 25 C 1.52994 * 109.47156 * 59.99559 * 24 23 22 26 26 C 1.52999 * 109.47288 * 299.99736 * 25 24 23 27 27 H 1.09000 * 109.46738 * 60.00763 * 1 2 3 28 28 H 1.08997 * 109.46522 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47098 * 300.00374 * 1 2 3 30 30 H 0.96997 * 119.99567 * 240.00577 * 6 5 3 31 31 H 1.09004 * 109.46763 * 60.00720 * 9 7 6 32 32 H 1.08995 * 109.47483 * 300.00377 * 9 7 6 33 33 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 34 34 H 1.08997 * 109.47624 * 300.00377 * 13 11 10 35 35 H 1.09006 * 109.47163 * 60.00429 * 13 11 10 36 36 H 1.08999 * 109.47123 * 179.97438 * 13 11 10 37 37 H 0.96996 * 119.99950 * 180.02562 * 17 16 14 38 38 H 1.08993 * 109.47220 * 299.99859 * 22 5 3 39 39 H 1.09004 * 109.46805 * 59.99757 * 22 5 3 40 40 H 1.08995 * 109.47626 * 179.97438 * 23 22 5 41 41 H 1.09004 * 109.46965 * 60.00316 * 23 22 5 42 42 H 1.08996 * 109.46786 * 299.99123 * 24 23 22 43 43 H 1.09006 * 109.46893 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.46780 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.47418 * 60.00548 * 25 24 23 46 46 H 1.08996 * 109.47067 * 300.00689 * 26 25 24 47 47 H 1.08997 * 109.46908 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1130 0.1708 0.7933 7 6 3.8538 -1.1041 0.4416 8 8 3.1685 -1.3374 -0.5315 9 6 4.4166 -2.2399 1.2567 10 7 3.9939 -3.5192 0.6712 11 6 4.5247 -4.6517 1.4418 12 1 4.5498 -4.3912 2.5000 13 6 5.9411 -4.9755 0.9626 14 6 3.6394 -5.8546 1.2415 15 1 2.7696 -5.7849 0.6049 16 6 3.9396 -7.0441 1.8707 17 7 4.9984 -7.1288 2.6461 18 14 2.8425 -8.5354 1.6217 19 1 1.7247 -8.1809 0.7107 20 1 3.6363 -9.6398 1.0256 21 1 2.2943 -8.9706 2.9313 22 6 4.0828 1.1757 -1.4362 23 6 5.6107 1.2564 -1.4356 24 6 6.0508 2.5891 -0.8263 25 6 5.5343 2.6882 0.6104 26 6 4.0064 2.6076 0.6099 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 4.6612 0.3575 1.5714 31 1 4.0490 -2.1693 2.2804 32 1 5.5051 -2.1827 1.2566 33 1 2.9887 -3.5698 0.6004 34 1 5.9162 -5.2358 -0.0955 35 1 6.5816 -4.1054 1.1076 36 1 6.3351 -5.8154 1.5346 37 1 5.2099 -7.9657 3.0885 38 1 3.7689 0.2265 -1.8703 39 1 3.6761 1.9972 -2.0260 40 1 5.9787 1.1852 -2.4591 41 1 6.0177 0.4351 -0.8457 42 1 5.6439 3.4103 -1.4162 43 1 7.1393 2.6467 -0.8263 44 1 5.8483 3.6375 1.0447 45 1 5.9413 1.8670 1.2004 46 1 3.5995 3.4289 0.0199 47 1 3.6386 2.6778 1.6335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602867893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:19 Heat of formation + Delta-G solvation = -126.135425 kcal Electronic energy + Delta-G solvation = -27766.686511 eV Core-core repulsion = 23949.329848 eV Total energy + Delta-G solvation = -3817.356663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.29113 -39.34100 -37.98558 -36.29949 -35.52136 -33.78438 -32.49453 -31.12736 -30.57558 -28.82690 -27.69839 -25.64931 -24.78402 -23.86523 -23.02925 -21.04061 -20.72233 -19.71123 -19.17624 -17.83242 -17.38567 -16.82357 -16.37458 -15.99075 -15.62357 -15.19364 -14.80432 -14.63956 -14.25816 -14.04164 -13.77032 -13.44912 -13.29704 -12.99141 -12.93847 -12.61081 -12.58160 -12.42522 -12.34059 -11.97161 -11.76357 -11.40920 -11.26094 -11.04324 -10.92414 -10.84453 -10.72649 -10.67719 -10.53016 -10.36529 -10.23138 -10.13694 -10.04295 -9.24487 -9.03424 -8.81772 -8.47736 -7.27540 -6.03421 -4.08954 2.08830 2.70181 3.09267 3.18667 3.29530 3.37543 3.42983 4.21385 4.41386 4.42649 4.53214 4.81895 4.83017 5.00362 5.08720 5.16343 5.20004 5.22632 5.24417 5.27681 5.39316 5.43942 5.45920 5.58595 5.66532 5.74382 5.83321 5.85489 5.89983 5.93096 5.97639 6.13320 6.18021 6.40833 6.44252 6.83625 7.10864 7.19137 7.43041 7.60653 7.75418 7.79606 7.88398 8.26409 8.37705 8.55290 8.67785 9.01856 9.57062 11.03164 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.003508 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.707195 B = 7980.743213 C = 8996.507399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.459 3.541 4 O -0.519 6.519 5 C 0.198 3.802 6 N -0.731 5.731 7 C 0.512 3.488 8 O -0.487 6.487 9 C 0.047 3.953 10 N -0.670 5.670 11 C 0.212 3.788 12 H 0.001 0.999 13 C -0.124 4.124 14 C -0.515 4.515 15 H 0.062 0.938 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.129 4.129 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.402 0.598 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.341 0.659 34 H 0.033 0.967 35 H 0.003 0.997 36 H 0.081 0.919 37 H 0.260 0.740 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 20.618 -2.932 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.227 6.227 3 C 0.301 3.699 4 O -0.407 6.407 5 C 0.109 3.891 6 N -0.389 5.389 7 C 0.298 3.702 8 O -0.358 6.358 9 C -0.087 4.087 10 N -0.303 5.303 11 C 0.104 3.896 12 H 0.019 0.981 13 C -0.183 4.183 14 C -0.554 4.554 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.168 4.168 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.155 4.155 26 C -0.149 4.149 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.237 0.763 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.160 0.840 34 H 0.052 0.948 35 H 0.022 0.978 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.216 20.524 -4.009 20.913 hybrid contribution -1.087 -0.618 1.171 1.713 sum -0.870 19.906 -2.839 20.126 Atomic orbital electron populations 1.23271 0.77656 1.03793 1.01621 1.86958 1.22136 1.31442 1.82198 1.24228 0.92047 0.81924 0.71750 1.90632 1.66952 1.36762 1.46383 1.20054 0.85214 0.88974 0.94879 1.46194 1.55769 1.04946 1.32040 1.21049 0.80149 0.83029 0.85937 1.90670 1.35342 1.83438 1.26388 1.21774 1.01207 0.90417 0.95259 1.60516 1.16934 0.99300 1.53566 1.19157 0.93215 0.86898 0.90295 0.98107 1.21723 0.96856 0.99369 1.00328 1.21294 1.10282 0.95324 1.28501 0.92009 1.24907 0.95351 0.98769 0.94973 1.69902 1.25978 1.26315 1.30812 0.86458 0.80625 0.82627 0.77815 1.19691 1.20973 1.21143 1.21956 0.96900 1.04817 0.93088 1.21449 0.94274 0.97803 1.01462 1.21590 1.00676 0.97881 0.95793 1.21551 0.93918 1.02429 0.97640 1.21717 0.96914 0.94450 1.01855 0.92320 0.88010 0.92549 0.76250 0.93623 0.89099 0.84031 0.94811 0.97815 0.90058 0.93006 0.88391 0.91005 0.91374 0.91146 0.91862 0.91598 0.91054 0.91417 0.89148 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.31 -4.87 6.73 -47.37 -0.32 -5.19 16 3 C 0.46 6.61 6.71 36.01 0.24 6.85 16 4 O -0.52 -8.08 15.84 -18.75 -0.30 -8.37 16 5 C 0.20 2.28 0.63 -132.97 -0.08 2.20 16 6 N -0.73 -8.44 4.03 -48.68 -0.20 -8.64 16 7 C 0.51 7.89 6.80 -10.99 -0.07 7.82 16 8 O -0.49 -8.98 11.45 -18.95 -0.22 -9.20 16 9 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 10 N -0.67 -14.44 5.93 -109.22 -0.65 -15.09 16 11 C 0.21 5.27 2.60 -68.86 -0.18 5.09 16 12 H 0.00 0.04 7.80 -51.93 -0.40 -0.37 16 13 C -0.12 -3.04 9.19 37.16 0.34 -2.70 16 14 C -0.52 -14.12 8.59 -34.44 -0.30 -14.41 16 15 H 0.06 1.70 7.62 -52.48 -0.40 1.30 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -25.12 11.32 55.43 0.63 -24.50 16 18 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 22 C -0.13 -1.49 4.50 -26.73 -0.12 -1.61 16 23 C -0.11 -1.07 5.77 -26.73 -0.15 -1.22 16 24 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 25 C -0.12 -0.82 5.75 -26.73 -0.15 -0.97 16 26 C -0.11 -0.99 4.31 -26.73 -0.12 -1.10 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.40 3.56 7.32 -40.82 -0.30 3.27 16 31 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.09 1.44 7.43 -51.93 -0.39 1.06 16 33 H 0.34 7.60 7.92 -39.29 -0.31 7.29 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 36 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.10 1.42 6.17 -51.93 -0.32 1.10 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.74 7.61 -51.93 -0.39 0.35 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.44 6.86 -51.93 -0.36 0.09 16 46 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -31.67 366.66 -8.12 -39.79 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.76 Total: 6.75 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 0.19 Total: 2.68 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.22 Total: -48.23 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.83 Total: -22.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.67 -8.12 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.349 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds