Wall clock time and date at job start Fri Apr 10 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99599 * 2 1 4 4 O 1.20824 * 120.00298 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99581 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47504 * 324.99591 * 5 3 2 7 7 C 1.34776 * 119.99719 * 59.99716 * 6 5 3 8 8 O 1.21282 * 119.99837 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99767 * 179.97438 * 7 6 5 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 6 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46962 * 34.99990 * 11 10 9 13 13 C 1.52999 * 109.47094 * 274.99984 * 11 10 9 14 14 C 1.50696 * 109.47161 * 155.00107 * 11 10 9 15 15 H 1.08005 * 119.99735 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00295 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99693 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00152 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47060 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47124 * 119.99693 * 18 16 14 21 21 H 1.48501 * 109.46777 * 239.99619 * 18 16 14 22 22 C 1.52999 * 109.47312 * 84.99618 * 5 3 2 23 23 C 1.52999 * 109.47397 * 179.97438 * 22 5 3 24 24 C 1.53005 * 109.47169 * 300.00616 * 23 22 5 25 25 C 1.52994 * 109.47156 * 59.99559 * 24 23 22 26 26 C 1.52999 * 109.47288 * 299.99736 * 25 24 23 27 27 H 1.09000 * 109.46738 * 60.00763 * 1 2 3 28 28 H 1.08997 * 109.46522 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47098 * 300.00374 * 1 2 3 30 30 H 0.96997 * 119.99567 * 240.00577 * 6 5 3 31 31 H 1.09004 * 109.46763 * 60.00720 * 9 7 6 32 32 H 1.08995 * 109.47483 * 300.00377 * 9 7 6 33 33 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 34 34 H 1.08997 * 109.47624 * 300.00377 * 13 11 10 35 35 H 1.09006 * 109.47163 * 60.00429 * 13 11 10 36 36 H 1.08999 * 109.47123 * 179.97438 * 13 11 10 37 37 H 0.96996 * 119.99950 * 180.02562 * 17 16 14 38 38 H 1.08993 * 109.47220 * 299.99859 * 22 5 3 39 39 H 1.09004 * 109.46805 * 59.99757 * 22 5 3 40 40 H 1.08995 * 109.47626 * 179.97438 * 23 22 5 41 41 H 1.09004 * 109.46965 * 60.00316 * 23 22 5 42 42 H 1.08996 * 109.46786 * 299.99123 * 24 23 22 43 43 H 1.09006 * 109.46893 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.46780 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.47418 * 60.00548 * 25 24 23 46 46 H 1.08996 * 109.47067 * 300.00689 * 26 25 24 47 47 H 1.08997 * 109.46908 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1130 0.1708 0.7933 7 6 3.8538 -1.1041 0.4416 8 8 3.1685 -1.3374 -0.5315 9 6 4.4166 -2.2399 1.2567 10 7 3.9939 -3.5192 0.6712 11 6 4.5247 -4.6517 1.4418 12 1 4.5498 -4.3912 2.5000 13 6 5.9411 -4.9755 0.9626 14 6 3.6394 -5.8546 1.2415 15 1 2.7696 -5.7849 0.6049 16 6 3.9396 -7.0441 1.8707 17 7 4.9984 -7.1288 2.6461 18 14 2.8425 -8.5354 1.6217 19 1 1.7247 -8.1809 0.7107 20 1 3.6363 -9.6398 1.0256 21 1 2.2943 -8.9706 2.9313 22 6 4.0828 1.1757 -1.4362 23 6 5.6107 1.2564 -1.4356 24 6 6.0508 2.5891 -0.8263 25 6 5.5343 2.6882 0.6104 26 6 4.0064 2.6076 0.6099 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 4.6612 0.3575 1.5714 31 1 4.0490 -2.1693 2.2804 32 1 5.5051 -2.1827 1.2566 33 1 2.9887 -3.5698 0.6004 34 1 5.9162 -5.2358 -0.0955 35 1 6.5816 -4.1054 1.1076 36 1 6.3351 -5.8154 1.5346 37 1 5.2099 -7.9657 3.0885 38 1 3.7689 0.2265 -1.8703 39 1 3.6761 1.9972 -2.0260 40 1 5.9787 1.1852 -2.4591 41 1 6.0177 0.4351 -0.8457 42 1 5.6439 3.4103 -1.4162 43 1 7.1393 2.6467 -0.8263 44 1 5.8483 3.6375 1.0447 45 1 5.9413 1.8670 1.2004 46 1 3.5995 3.4289 0.0199 47 1 3.6386 2.6778 1.6335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602867893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:17 Heat of formation + Delta-G solvation = -146.269716 kcal Electronic energy + Delta-G solvation = -27767.559599 eV Core-core repulsion = 23949.329848 eV Total energy + Delta-G solvation = -3818.229752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.33474 -40.49799 -39.03051 -37.52060 -37.19622 -34.78399 -34.41800 -31.89785 -31.70576 -30.47387 -28.68604 -27.48274 -26.50944 -24.81697 -23.78230 -22.22141 -21.77731 -21.43737 -20.12677 -19.01159 -18.76907 -18.11779 -17.59185 -17.41386 -16.78333 -16.54725 -16.33648 -15.80580 -15.32352 -15.28298 -14.93326 -14.71194 -14.42581 -14.39697 -14.27738 -13.79635 -13.45578 -13.42289 -13.28005 -13.21199 -13.02422 -12.96753 -12.79771 -12.63274 -12.27510 -12.17964 -12.13422 -12.00225 -11.92030 -11.77555 -11.49706 -11.26024 -11.15963 -10.88689 -10.58468 -10.45337 -10.10632 -9.01551 -8.12275 -6.24791 0.98101 1.41685 1.44315 1.55824 1.65555 1.91558 2.09735 2.43969 3.16728 3.35955 3.61522 3.70853 3.74571 3.95529 4.11957 4.17033 4.19103 4.24077 4.25963 4.42147 4.47408 4.51713 4.55297 4.62382 4.63861 4.75813 4.88498 4.98578 5.06383 5.11882 5.18063 5.19540 5.23510 5.25937 5.34270 5.38050 5.43567 5.49113 5.53367 5.68606 5.88377 6.25566 6.45251 6.55037 6.65097 6.80659 6.98619 7.40830 7.45361 8.93428 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.003508 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.707195 B = 7980.743213 C = 8996.507399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.335 6.335 3 C 0.452 3.548 4 O -0.534 6.534 5 C 0.199 3.801 6 N -0.712 5.712 7 C 0.518 3.482 8 O -0.520 6.520 9 C 0.046 3.954 10 N -0.675 5.675 11 C 0.217 3.783 12 H -0.019 1.019 13 C -0.113 4.113 14 C -0.537 4.537 15 H 0.053 0.947 16 C 0.017 3.983 17 N -0.914 5.914 18 Si 0.958 3.042 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.279 1.279 22 C -0.127 4.127 23 C -0.109 4.109 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.106 4.106 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.418 0.582 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.334 0.666 34 H 0.022 0.978 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 21.990 -2.514 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.250 6.250 3 C 0.295 3.705 4 O -0.424 6.424 5 C 0.110 3.890 6 N -0.370 5.370 7 C 0.305 3.695 8 O -0.393 6.393 9 C -0.087 4.087 10 N -0.307 5.307 11 C 0.109 3.891 12 H -0.002 1.002 13 C -0.171 4.171 14 C -0.576 4.576 15 H 0.071 0.929 16 C -0.182 4.182 17 N -0.553 5.553 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.165 4.165 23 C -0.147 4.147 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.144 4.144 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.256 0.744 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.152 0.848 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.953 21.932 -3.569 22.241 hybrid contribution -1.342 -0.991 1.026 1.958 sum -0.388 20.942 -2.543 21.099 Atomic orbital electron populations 1.23432 0.76573 1.04650 1.02200 1.86950 1.23538 1.32261 1.82205 1.24817 0.93161 0.81419 0.71118 1.90611 1.67563 1.37041 1.47218 1.20266 0.83478 0.90050 0.95210 1.45903 1.55059 1.03766 1.32255 1.20708 0.79745 0.83844 0.85220 1.90675 1.36871 1.84088 1.27705 1.21825 1.02093 0.88955 0.95787 1.60392 1.16360 1.00423 1.53563 1.18963 0.93260 0.87481 0.89416 1.00182 1.21546 0.97022 0.99579 0.99000 1.21587 1.10611 0.96747 1.28626 0.92895 1.25636 0.96586 1.01301 0.94687 1.70002 1.27042 1.27059 1.31246 0.85500 0.78923 0.79287 0.77866 1.19576 1.20548 1.20429 1.21904 0.98501 1.03214 0.92876 1.21438 0.92459 0.98971 1.01801 1.21582 1.01570 0.96433 0.95971 1.21579 0.92071 1.03918 0.97549 1.21753 0.98486 0.92299 1.01843 0.91961 0.87110 0.91739 0.74356 0.92513 0.87690 0.84818 0.95833 0.95168 0.92322 0.92789 0.91691 0.90431 0.91145 0.92161 0.91250 0.90184 0.88894 0.90743 0.89247 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.34 -10.47 6.73 -43.69 -0.29 -10.77 16 3 C 0.45 12.84 6.71 71.24 0.48 13.31 16 4 O -0.53 -16.35 15.84 21.97 0.35 -16.01 16 5 C 0.20 4.34 0.63 2.86 0.00 4.35 16 6 N -0.71 -15.40 4.03 -426.31 -1.72 -17.12 16 7 C 0.52 15.68 6.80 87.66 0.60 16.27 16 8 O -0.52 -19.36 11.45 20.40 0.23 -19.13 16 9 C 0.05 1.51 5.97 85.56 0.51 2.02 16 10 N -0.68 -29.21 5.93 -499.46 -2.96 -32.17 16 11 C 0.22 10.89 2.60 44.17 0.11 11.00 16 12 H -0.02 -1.03 7.80 -2.38 -0.02 -1.05 16 13 C -0.11 -5.51 9.19 71.98 0.66 -4.85 16 14 C -0.54 -29.76 8.59 25.60 0.22 -29.54 16 15 H 0.05 2.96 7.62 -2.91 -0.02 2.93 16 16 C 0.02 0.95 5.30 84.66 0.45 1.40 16 17 N -0.91 -51.72 11.32 21.45 0.24 -51.48 16 18 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 22 C -0.13 -2.83 4.50 30.59 0.14 -2.69 16 23 C -0.11 -1.90 5.77 30.60 0.18 -1.72 16 24 C -0.12 -1.39 5.92 30.59 0.18 -1.21 16 25 C -0.11 -1.18 5.75 30.59 0.18 -1.01 16 26 C -0.11 -1.62 4.31 30.60 0.13 -1.49 16 27 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 28 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 30 H 0.42 6.39 7.32 -92.71 -0.68 5.71 16 31 H 0.06 1.77 8.06 -2.39 -0.02 1.75 16 32 H 0.11 3.15 7.43 -2.39 -0.02 3.13 16 33 H 0.33 15.16 7.92 -89.69 -0.71 14.45 16 34 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.03 1.26 7.45 -2.38 -0.02 1.24 16 36 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 37 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.06 1.92 6.17 -2.39 -0.01 1.90 16 39 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.17 7.61 -2.38 -0.02 1.16 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.07 0.70 6.86 -2.39 -0.02 0.68 16 46 H 0.09 1.44 7.87 -2.39 -0.02 1.42 16 47 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.45 366.66 2.50 -65.95 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.41 Total: 27.35 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.03 Total: 7.68 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -4.44 Total: -100.78 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: 0.29 Total: -45.90 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -68.45 2.50 -65.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.316 kcal (2) G-P(sol) polarization free energy of solvation -68.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds