Wall clock time and date at job start Fri Apr 10 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00024 * 2 1 4 4 O 1.20829 * 119.99821 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00260 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46877 * 324.99914 * 5 3 2 7 7 C 1.34772 * 120.00224 * 60.00085 * 6 5 3 8 8 O 1.21284 * 119.99906 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00293 * 180.02562 * 7 6 5 10 10 N 1.46906 * 109.47093 * 180.02562 * 9 7 6 11 11 C 1.46903 * 110.99973 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46808 * 325.00209 * 11 10 9 13 13 C 1.53000 * 109.47120 * 84.99803 * 11 10 9 14 14 C 1.50694 * 109.47066 * 204.99831 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.52990 * 109.47308 * 84.99802 * 5 3 2 23 23 C 1.53001 * 109.47191 * 180.02562 * 22 5 3 24 24 C 1.53002 * 109.47065 * 300.00375 * 23 22 5 25 25 C 1.52996 * 109.47192 * 59.99535 * 24 23 22 26 26 C 1.52992 * 109.47409 * 300.00105 * 25 24 23 27 27 H 1.08995 * 109.47073 * 59.99936 * 1 2 3 28 28 H 1.09004 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46735 * 299.99515 * 1 2 3 30 30 H 0.97005 * 120.00486 * 240.00287 * 6 5 3 31 31 H 1.08993 * 109.47230 * 60.00296 * 9 7 6 32 32 H 1.08998 * 109.47345 * 299.99740 * 9 7 6 33 33 H 1.00894 * 111.00400 * 56.04161 * 10 9 7 34 34 H 1.09007 * 109.47356 * 300.00024 * 13 11 10 35 35 H 1.09000 * 109.47156 * 59.99749 * 13 11 10 36 36 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.47880 * 300.00127 * 22 5 3 39 39 H 1.09003 * 109.47153 * 60.00539 * 22 5 3 40 40 H 1.09001 * 109.47253 * 180.02562 * 23 22 5 41 41 H 1.09003 * 109.47318 * 60.00164 * 23 22 5 42 42 H 1.09003 * 109.47107 * 299.99554 * 24 23 22 43 43 H 1.09004 * 109.47157 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47278 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.46783 * 60.00461 * 25 24 23 46 46 H 1.09003 * 109.47439 * 299.99954 * 26 25 24 47 47 H 1.09001 * 109.47167 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1135 0.1705 0.7912 7 6 3.8542 -1.1043 0.4391 8 8 3.1682 -1.3372 -0.5336 9 6 4.4166 -2.2405 1.2540 10 7 3.9937 -3.5195 0.6681 11 6 4.5250 -4.6524 1.4377 12 1 5.5151 -4.4008 1.8179 13 6 3.5903 -4.9555 2.6104 14 6 4.6220 -5.8637 0.5465 15 1 4.3188 -5.7987 -0.4881 16 6 5.0969 -7.0554 1.0521 17 7 5.4656 -7.1347 2.3120 18 14 5.2164 -8.5570 -0.0524 19 1 3.9453 -9.3222 0.0131 20 1 5.4621 -8.1242 -1.4516 21 1 6.3368 -9.4186 0.4032 22 6 4.0816 1.1764 -1.4377 23 6 5.6096 1.2559 -1.4382 24 6 6.0512 2.5877 -0.8282 25 6 5.5358 2.6863 0.6089 26 6 4.0079 2.6068 0.6094 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.6625 0.3566 1.5690 31 1 4.0490 -2.1702 2.2776 32 1 5.5051 -2.1836 1.2540 33 1 4.2670 -3.5813 -0.3012 34 1 3.5201 -4.0793 3.2550 35 1 2.6002 -5.2070 2.2302 36 1 3.9847 -5.7958 3.1817 37 1 5.7993 -7.9731 2.6678 38 1 3.7675 0.2273 -1.8722 39 1 3.6746 1.9982 -2.0269 40 1 5.9767 1.1861 -2.4622 41 1 6.0164 0.4338 -0.8492 42 1 5.6444 3.4098 -1.4173 43 1 7.1397 2.6446 -0.8290 44 1 5.8507 3.6350 1.0437 45 1 5.9426 1.8643 1.1980 46 1 3.6011 3.4288 0.0204 47 1 3.6408 2.6766 1.6334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602867894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:23 Heat of formation + Delta-G solvation = -125.816750 kcal Electronic energy + Delta-G solvation = -27761.039266 eV Core-core repulsion = 23943.696421 eV Total energy + Delta-G solvation = -3817.342844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28084 -39.32822 -37.98408 -36.26950 -35.52195 -33.78804 -32.49479 -31.14224 -30.57647 -28.82612 -27.66307 -25.64672 -24.78297 -23.86195 -23.04110 -21.02791 -20.72084 -19.71186 -19.17644 -17.80705 -17.42269 -16.72993 -16.36026 -16.02532 -15.61610 -15.27177 -14.84529 -14.48963 -14.17280 -14.13619 -13.74193 -13.42338 -13.36718 -13.01604 -12.95188 -12.59571 -12.53929 -12.41345 -12.37715 -11.93343 -11.75338 -11.42896 -11.24150 -11.04189 -10.92455 -10.86324 -10.72674 -10.63698 -10.54412 -10.35332 -10.23813 -10.14059 -10.03959 -9.26113 -9.02038 -8.82707 -8.47087 -7.26945 -6.03210 -4.08911 2.10852 2.72736 3.08850 3.19552 3.31175 3.37414 3.41414 4.21178 4.41388 4.41724 4.53117 4.81794 4.82277 4.99211 5.08334 5.18614 5.20100 5.23477 5.26467 5.27670 5.38770 5.43298 5.44605 5.61814 5.67213 5.73244 5.81803 5.84437 5.90903 5.91947 5.95503 6.10998 6.15482 6.40826 6.47584 6.84072 7.11298 7.19432 7.43225 7.60666 7.78260 7.79501 7.88410 8.26544 8.37736 8.55244 8.67796 9.01670 9.57056 11.03273 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.003442 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.701326 B = 8133.736053 C = 8815.047505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.310 6.310 3 C 0.458 3.542 4 O -0.520 6.520 5 C 0.197 3.803 6 N -0.731 5.731 7 C 0.512 3.488 8 O -0.487 6.487 9 C 0.047 3.953 10 N -0.669 5.669 11 C 0.212 3.788 12 H 0.001 0.999 13 C -0.125 4.125 14 C -0.516 4.516 15 H 0.061 0.939 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.274 1.274 21 H -0.287 1.287 22 C -0.130 4.130 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.402 0.598 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.340 0.660 34 H 0.003 0.997 35 H 0.032 0.968 36 H 0.081 0.919 37 H 0.261 0.739 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 20.603 -2.411 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.224 6.224 3 C 0.300 3.700 4 O -0.409 6.409 5 C 0.109 3.891 6 N -0.390 5.390 7 C 0.298 3.702 8 O -0.359 6.359 9 C -0.086 4.086 10 N -0.303 5.303 11 C 0.105 3.895 12 H 0.019 0.981 13 C -0.183 4.183 14 C -0.555 4.555 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.199 1.199 21 H -0.213 1.213 22 C -0.168 4.168 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.155 4.155 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.159 0.841 34 H 0.022 0.978 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.627 20.517 -2.685 20.755 hybrid contribution 0.918 -0.635 -0.255 1.145 sum -0.709 19.882 -2.940 20.111 Atomic orbital electron populations 1.23263 0.77654 1.03815 1.01500 1.86981 1.22124 1.31216 1.82056 1.24211 0.92032 0.81993 0.71792 1.90631 1.66956 1.36804 1.46463 1.20045 0.85315 0.88963 0.94801 1.46196 1.55655 1.04949 1.32152 1.21050 0.80205 0.83041 0.85871 1.90668 1.35010 1.83466 1.26715 1.21772 0.97532 0.90425 0.98901 1.60493 1.63822 0.99301 1.06634 1.19148 0.91682 0.86862 0.91800 0.98101 1.21726 0.99263 0.99315 0.97989 1.21254 1.42585 0.94878 0.96774 0.92060 1.24907 0.95135 0.98792 0.95131 1.69896 1.43665 1.26318 1.13130 0.86509 0.77614 0.82571 0.80775 1.20615 1.19888 1.21320 1.21956 0.96843 1.04803 0.93177 1.21453 0.94307 0.97833 1.01404 1.21589 1.00672 0.97858 0.95826 1.21551 0.93958 1.02439 0.97597 1.21715 0.96858 0.94476 1.01890 0.92420 0.87972 0.92581 0.76251 0.89161 0.93575 0.84136 0.97835 0.94833 0.90049 0.92948 0.88480 0.90937 0.91382 0.91267 0.91827 0.91607 0.91037 0.91435 0.89147 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.31 -4.94 6.73 -47.37 -0.32 -5.26 16 3 C 0.46 6.67 6.71 36.00 0.24 6.91 16 4 O -0.52 -8.16 15.85 -18.75 -0.30 -8.46 16 5 C 0.20 2.28 0.63 -132.98 -0.08 2.20 16 6 N -0.73 -8.45 4.03 -48.69 -0.20 -8.64 16 7 C 0.51 7.89 6.80 -10.99 -0.07 7.81 16 8 O -0.49 -8.98 11.45 -18.95 -0.22 -9.19 16 9 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 10 N -0.67 -14.42 5.93 -109.22 -0.65 -15.07 16 11 C 0.21 5.29 2.60 -68.87 -0.18 5.11 16 12 H 0.00 0.04 7.80 -51.93 -0.40 -0.37 16 13 C -0.12 -3.06 9.19 37.16 0.34 -2.72 16 14 C -0.52 -14.12 8.59 -34.44 -0.30 -14.42 16 15 H 0.06 1.68 7.62 -52.49 -0.40 1.28 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 18 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.13 -1.47 4.50 -26.74 -0.12 -1.59 16 23 C -0.11 -1.05 5.77 -26.73 -0.15 -1.20 16 24 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 25 C -0.12 -0.81 5.75 -26.74 -0.15 -0.97 16 26 C -0.11 -0.99 4.31 -26.73 -0.12 -1.10 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.40 3.57 7.32 -40.82 -0.30 3.27 16 31 H 0.09 1.48 7.44 -51.93 -0.39 1.09 16 32 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 33 H 0.34 7.50 7.92 -39.30 -0.31 7.19 16 34 H 0.00 0.06 7.46 -51.93 -0.39 -0.33 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.10 1.37 6.17 -51.93 -0.32 1.05 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.71 7.60 -51.93 -0.39 0.32 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.44 6.86 -51.93 -0.36 0.09 16 46 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -31.70 366.65 -8.12 -39.82 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.76 Total: 6.72 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 0.19 Total: 2.82 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.22 Total: -48.20 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.83 Total: -22.91 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.70 -8.12 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.997 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds