Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00024 * 2 1 4 4 O 1.20829 * 119.99821 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00260 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46877 * 324.99914 * 5 3 2 7 7 C 1.34772 * 120.00224 * 60.00085 * 6 5 3 8 8 O 1.21284 * 119.99906 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00293 * 180.02562 * 7 6 5 10 10 N 1.46906 * 109.47093 * 180.02562 * 9 7 6 11 11 C 1.46903 * 110.99973 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46808 * 325.00209 * 11 10 9 13 13 C 1.53000 * 109.47120 * 84.99803 * 11 10 9 14 14 C 1.50694 * 109.47066 * 204.99831 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.52990 * 109.47308 * 84.99802 * 5 3 2 23 23 C 1.53001 * 109.47191 * 180.02562 * 22 5 3 24 24 C 1.53002 * 109.47065 * 300.00375 * 23 22 5 25 25 C 1.52996 * 109.47192 * 59.99535 * 24 23 22 26 26 C 1.52992 * 109.47409 * 300.00105 * 25 24 23 27 27 H 1.08995 * 109.47073 * 59.99936 * 1 2 3 28 28 H 1.09004 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46735 * 299.99515 * 1 2 3 30 30 H 0.97005 * 120.00486 * 240.00287 * 6 5 3 31 31 H 1.08993 * 109.47230 * 60.00296 * 9 7 6 32 32 H 1.08998 * 109.47345 * 299.99740 * 9 7 6 33 33 H 1.00894 * 111.00400 * 56.04161 * 10 9 7 34 34 H 1.09007 * 109.47356 * 300.00024 * 13 11 10 35 35 H 1.09000 * 109.47156 * 59.99749 * 13 11 10 36 36 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.47880 * 300.00127 * 22 5 3 39 39 H 1.09003 * 109.47153 * 60.00539 * 22 5 3 40 40 H 1.09001 * 109.47253 * 180.02562 * 23 22 5 41 41 H 1.09003 * 109.47318 * 60.00164 * 23 22 5 42 42 H 1.09003 * 109.47107 * 299.99554 * 24 23 22 43 43 H 1.09004 * 109.47157 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47278 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.46783 * 60.00461 * 25 24 23 46 46 H 1.09003 * 109.47439 * 299.99954 * 26 25 24 47 47 H 1.09001 * 109.47167 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1135 0.1705 0.7912 7 6 3.8542 -1.1043 0.4391 8 8 3.1682 -1.3372 -0.5336 9 6 4.4166 -2.2405 1.2540 10 7 3.9937 -3.5195 0.6681 11 6 4.5250 -4.6524 1.4377 12 1 5.5151 -4.4008 1.8179 13 6 3.5903 -4.9555 2.6104 14 6 4.6220 -5.8637 0.5465 15 1 4.3188 -5.7987 -0.4881 16 6 5.0969 -7.0554 1.0521 17 7 5.4656 -7.1347 2.3120 18 14 5.2164 -8.5570 -0.0524 19 1 3.9453 -9.3222 0.0131 20 1 5.4621 -8.1242 -1.4516 21 1 6.3368 -9.4186 0.4032 22 6 4.0816 1.1764 -1.4377 23 6 5.6096 1.2559 -1.4382 24 6 6.0512 2.5877 -0.8282 25 6 5.5358 2.6863 0.6089 26 6 4.0079 2.6068 0.6094 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.6625 0.3566 1.5690 31 1 4.0490 -2.1702 2.2776 32 1 5.5051 -2.1836 1.2540 33 1 4.2670 -3.5813 -0.3012 34 1 3.5201 -4.0793 3.2550 35 1 2.6002 -5.2070 2.2302 36 1 3.9847 -5.7958 3.1817 37 1 5.7993 -7.9731 2.6678 38 1 3.7675 0.2273 -1.8722 39 1 3.6746 1.9982 -2.0269 40 1 5.9767 1.1861 -2.4622 41 1 6.0164 0.4338 -0.8492 42 1 5.6444 3.4098 -1.4173 43 1 7.1397 2.6446 -0.8290 44 1 5.8507 3.6350 1.0437 45 1 5.9426 1.8643 1.1980 46 1 3.6011 3.4288 0.0204 47 1 3.6408 2.6766 1.6334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602867894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -145.953619 kcal Electronic energy + Delta-G solvation = -27761.912466 eV Core-core repulsion = 23943.696421 eV Total energy + Delta-G solvation = -3818.216045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.32838 -40.49270 -39.02827 -37.51091 -37.19075 -34.78581 -34.41563 -31.90492 -31.70840 -30.47526 -28.67257 -27.48545 -26.50655 -24.81671 -23.78879 -22.21669 -21.77369 -21.43673 -20.12808 -19.00715 -18.77735 -18.08819 -17.54315 -17.40270 -16.84075 -16.64115 -16.31128 -15.61444 -15.45726 -15.05128 -15.04769 -14.86338 -14.39923 -14.34948 -14.28067 -13.80064 -13.49281 -13.42257 -13.25082 -13.20520 -13.02067 -12.95432 -12.79351 -12.63637 -12.27438 -12.18983 -12.14957 -11.98642 -11.92420 -11.75560 -11.50681 -11.26514 -11.15611 -10.90353 -10.58395 -10.45401 -10.09983 -9.00287 -8.11791 -6.24456 0.99239 1.43458 1.45069 1.54797 1.66738 1.91380 2.10657 2.44377 3.17182 3.35884 3.61204 3.70993 3.74929 3.95133 4.11283 4.17211 4.19242 4.24170 4.26666 4.41359 4.46762 4.51888 4.55128 4.63261 4.63901 4.75391 4.88017 4.97690 5.05638 5.11079 5.16893 5.18335 5.22999 5.25679 5.33606 5.39229 5.43196 5.48464 5.52207 5.68690 5.87914 6.25189 6.45640 6.55327 6.66681 6.81089 6.99272 7.40968 7.45679 8.93715 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.003442 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.701326 B = 8133.736053 C = 8815.047505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.333 6.333 3 C 0.451 3.549 4 O -0.535 6.535 5 C 0.199 3.801 6 N -0.712 5.712 7 C 0.518 3.482 8 O -0.520 6.520 9 C 0.046 3.954 10 N -0.676 5.676 11 C 0.218 3.782 12 H -0.018 1.018 13 C -0.113 4.113 14 C -0.538 4.538 15 H 0.053 0.947 16 C 0.018 3.982 17 N -0.914 5.914 18 Si 0.959 3.041 19 H -0.278 1.278 20 H -0.270 1.270 21 H -0.281 1.281 22 C -0.127 4.127 23 C -0.109 4.109 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.106 4.106 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.418 0.582 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.335 0.665 34 H 0.027 0.973 35 H 0.021 0.979 36 H 0.059 0.941 37 H 0.263 0.737 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 21.983 -2.206 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.247 6.247 3 C 0.294 3.706 4 O -0.425 6.425 5 C 0.110 3.890 6 N -0.370 5.370 7 C 0.305 3.695 8 O -0.393 6.393 9 C -0.086 4.086 10 N -0.308 5.308 11 C 0.110 3.890 12 H 0.000 1.000 13 C -0.172 4.172 14 C -0.576 4.576 15 H 0.072 0.928 16 C -0.182 4.182 17 N -0.554 5.554 18 Si 0.784 3.216 19 H -0.204 1.204 20 H -0.195 1.195 21 H -0.206 1.206 22 C -0.165 4.165 23 C -0.147 4.147 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.144 4.144 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.083 0.917 30 H 0.256 0.744 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.661 21.934 -2.455 22.081 hybrid contribution 0.578 -1.006 -0.324 1.205 sum -0.083 20.928 -2.780 21.112 Atomic orbital electron populations 1.23412 0.76618 1.04537 1.02161 1.86970 1.23501 1.32157 1.82115 1.24819 0.93180 0.81435 0.71137 1.90610 1.67577 1.37063 1.47278 1.20262 0.83492 0.90034 0.95215 1.45907 1.54945 1.03773 1.32367 1.20709 0.79782 0.83851 0.85176 1.90673 1.36536 1.84110 1.28024 1.21812 0.98656 0.88965 0.99197 1.60358 1.63949 1.00380 1.06119 1.18947 0.90816 0.87480 0.91780 1.00036 1.21554 0.98202 0.99460 0.97971 1.21557 1.42909 0.96280 0.96884 0.92835 1.25638 0.94759 1.01376 0.96405 1.69998 1.43980 1.27035 1.14353 0.85552 0.77648 0.79217 0.79160 1.20398 1.19482 1.20618 1.21908 0.98447 1.03277 0.92876 1.21442 0.92481 0.98957 1.01790 1.21584 1.01543 0.96481 0.95987 1.21577 0.92106 1.03901 0.97531 1.21751 0.98429 0.92334 1.01867 0.91961 0.87307 0.91720 0.74363 0.88290 0.91920 0.84758 0.95418 0.95930 0.92263 0.92786 0.91631 0.90387 0.91086 0.92221 0.91217 0.90231 0.88902 0.90789 0.89241 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.87 16 2 O -0.33 -10.63 6.73 -43.68 -0.29 -10.92 16 3 C 0.45 12.92 6.71 71.23 0.48 13.40 16 4 O -0.54 -16.48 15.85 21.96 0.35 -16.13 16 5 C 0.20 4.34 0.63 2.85 0.00 4.34 16 6 N -0.71 -15.39 4.03 -426.34 -1.72 -17.11 16 7 C 0.52 15.65 6.80 87.66 0.60 16.25 16 8 O -0.52 -19.33 11.45 20.39 0.23 -19.09 16 9 C 0.05 1.52 5.97 85.56 0.51 2.03 16 10 N -0.68 -29.19 5.93 -499.46 -2.96 -32.15 16 11 C 0.22 10.93 2.60 44.17 0.11 11.04 16 12 H -0.02 -0.95 7.80 -2.39 -0.02 -0.97 16 13 C -0.11 -5.58 9.19 71.98 0.66 -4.92 16 14 C -0.54 -29.70 8.59 25.60 0.22 -29.48 16 15 H 0.05 2.97 7.62 -2.91 -0.02 2.95 16 16 C 0.02 0.97 5.30 84.66 0.45 1.42 16 17 N -0.91 -51.72 11.32 21.45 0.24 -51.48 16 18 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.13 -2.79 4.50 30.59 0.14 -2.65 16 23 C -0.11 -1.86 5.77 30.60 0.18 -1.69 16 24 C -0.12 -1.39 5.92 30.59 0.18 -1.20 16 25 C -0.11 -1.18 5.75 30.59 0.18 -1.01 16 26 C -0.11 -1.62 4.31 30.59 0.13 -1.49 16 27 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 30 H 0.42 6.39 7.32 -92.70 -0.68 5.72 16 31 H 0.10 3.08 7.44 -2.39 -0.02 3.06 16 32 H 0.06 1.89 8.05 -2.39 -0.02 1.87 16 33 H 0.33 14.99 7.92 -89.70 -0.71 14.28 16 34 H 0.03 1.17 7.46 -2.38 -0.02 1.15 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 37 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 38 H 0.07 1.89 6.17 -2.39 -0.01 1.88 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.13 7.60 -2.39 -0.02 1.12 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.07 0.70 6.86 -2.39 -0.02 0.68 16 46 H 0.09 1.44 7.87 -2.39 -0.02 1.42 16 47 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.38 366.65 2.50 -65.88 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.41 Total: 27.51 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.03 Total: 7.92 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -4.44 Total: -100.73 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: 0.29 Total: -46.15 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.38 2.50 -65.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.077 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds