Wall clock time and date at job start Fri Apr 10 2020 18:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47035 * 2 1 4 4 C 1.46495 * 120.00003 * 270.00157 * 3 2 1 5 5 C 1.50699 * 109.47328 * 270.00165 * 4 3 2 6 6 H 1.08004 * 119.99645 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00571 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00349 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99476 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46925 * 90.00121 * 9 7 5 11 11 H 1.48498 * 109.46721 * 210.00020 * 9 7 5 12 12 H 1.48497 * 109.47208 * 330.00061 * 9 7 5 13 13 C 1.34774 * 119.99655 * 90.00111 * 3 2 1 14 14 O 1.21281 * 119.99353 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00218 * 0.27708 * 13 3 2 16 16 N 1.46900 * 109.47173 * 176.01334 * 15 13 3 17 17 C 1.46895 * 111.00248 * 162.46640 * 16 15 13 18 18 C 1.52995 * 109.47319 * 192.49977 * 17 16 15 19 19 H 1.09006 * 109.47457 * 293.78577 * 18 17 16 20 20 C 1.53007 * 109.47300 * 173.78760 * 18 17 16 21 21 C 1.50703 * 109.47359 * 53.79082 * 18 17 16 22 22 O 1.20832 * 119.99572 * 359.97438 * 21 18 17 23 23 O 1.34220 * 120.00427 * 180.02562 * 21 18 17 24 24 C 1.46902 * 110.99961 * 286.41961 * 16 15 13 25 25 C 1.53003 * 117.49898 * 5.89548 * 24 16 15 26 26 C 1.52992 * 59.99866 * 252.51227 * 25 24 16 27 27 H 1.09001 * 109.47509 * 59.99663 * 1 2 3 28 28 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47291 * 299.99606 * 1 2 3 30 30 H 1.09006 * 109.46884 * 240.00236 * 2 1 3 31 31 H 1.08996 * 109.47179 * 120.00025 * 2 1 3 32 32 H 1.09002 * 109.47476 * 29.99863 * 4 3 2 33 33 H 1.08998 * 109.47250 * 150.00080 * 4 3 2 34 34 H 0.97002 * 119.99959 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47002 * 296.00935 * 15 13 3 36 36 H 1.08997 * 109.47500 * 56.00925 * 15 13 3 37 37 H 1.08997 * 109.47276 * 312.49995 * 17 16 15 38 38 H 1.09004 * 109.47137 * 72.49889 * 17 16 15 39 39 H 1.08999 * 109.47268 * 184.63968 * 20 18 17 40 40 H 1.08992 * 109.46858 * 304.64225 * 20 18 17 41 41 H 1.09002 * 109.46675 * 64.63987 * 20 18 17 42 42 H 0.96698 * 117.00627 * 179.97438 * 23 21 18 43 43 H 1.08998 * 115.55191 * 151.59928 * 24 16 15 44 44 H 1.09002 * 117.49568 * 0.02562 * 25 24 16 45 45 H 1.08997 * 117.50225 * 145.01411 * 25 24 16 46 46 H 1.09009 * 117.49439 * 252.50943 * 26 25 24 47 47 H 1.08997 * 117.50262 * 107.49319 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 5.3912 2.1834 -3.2574 9 14 3.0129 3.4361 -3.9287 10 1 3.1156 4.8562 -3.5068 11 1 3.4065 3.3138 -5.3553 12 1 1.6134 2.9694 -3.7596 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9977 1.3040 2.4723 16 7 2.4047 2.1699 3.5869 17 6 1.8159 1.7112 4.8521 18 6 1.9969 2.7914 5.9203 19 1 3.0576 2.9080 6.1431 20 6 1.2508 2.3817 7.1917 21 6 1.4438 4.0980 5.4123 22 8 0.9553 4.1589 4.3088 23 8 1.4947 5.1942 6.1851 24 6 3.8683 2.2485 3.6854 25 6 4.6877 1.5717 2.5847 26 6 4.6268 0.9535 3.9829 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 5.7172 2.5740 -4.0834 35 1 0.9375 1.0681 2.5638 36 1 2.5786 0.3820 2.4976 37 1 0.7530 1.5166 4.7088 38 1 2.3128 0.7957 5.1733 39 1 1.3106 3.1872 7.9236 40 1 0.2058 2.1852 6.9523 41 1 1.7046 1.4809 7.6049 42 1 1.1277 6.0091 5.8160 43 1 4.2620 3.1715 4.1109 44 1 4.1407 1.0685 1.7874 45 1 5.6206 2.0495 2.2858 46 1 5.5198 1.0247 4.6039 47 1 4.0399 0.0433 4.1057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737094337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:51 Heat of formation + Delta-G solvation = -74.830301 kcal Electronic energy + Delta-G solvation = -27932.206010 eV Core-core repulsion = 24117.074104 eV Total energy + Delta-G solvation = -3815.131906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45843 -39.62534 -37.88958 -35.96661 -35.15572 -34.77291 -32.80952 -32.35658 -30.27248 -28.71777 -26.91254 -25.04618 -24.44648 -22.90674 -22.32586 -22.06387 -20.83667 -19.44367 -18.08321 -17.89971 -17.17061 -16.81744 -16.47929 -16.38239 -15.68096 -15.31455 -14.70845 -14.45159 -14.31539 -13.73096 -13.63645 -13.48928 -13.38488 -13.07092 -12.81086 -12.48921 -12.34355 -12.20872 -12.05544 -11.92533 -11.83082 -11.50797 -11.30233 -11.23598 -11.18978 -11.01479 -10.87288 -10.65898 -10.51050 -10.42471 -10.14851 -10.09661 -9.91880 -9.47234 -8.84421 -8.53273 -7.97671 -7.57727 -6.03715 -4.01269 2.48424 3.09748 3.33456 3.39319 3.42288 3.54324 3.56282 3.99216 4.17704 4.45014 4.50054 4.73448 4.89221 5.01335 5.05123 5.12708 5.14818 5.24209 5.29979 5.33189 5.35867 5.40135 5.47103 5.51087 5.59976 5.64130 5.73428 5.77677 5.80868 5.85974 6.01647 6.13848 6.20038 6.32642 6.39082 6.44843 6.68138 6.76781 6.98767 7.10543 7.17612 7.49592 7.68769 8.12976 8.40748 8.54078 8.99251 9.21130 9.58072 11.09710 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.003936 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.266291 B = 7112.076839 C = 7183.933492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.219 3.781 5 C -0.523 4.523 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.511 3.489 14 O -0.509 6.509 15 C 0.036 3.964 16 N -0.474 5.474 17 C 0.070 3.930 18 C -0.074 4.074 19 H 0.106 0.894 20 C -0.144 4.144 21 C 0.470 3.530 22 O -0.466 6.466 23 O -0.530 6.530 24 C 0.032 3.968 25 C -0.165 4.165 26 C -0.225 4.225 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.406 0.594 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 -4.294 20.614 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.098 3.902 5 C -0.562 4.562 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.297 3.703 14 O -0.382 6.382 15 C -0.095 4.095 16 N -0.195 5.195 17 C -0.058 4.058 18 C -0.093 4.093 19 H 0.124 0.876 20 C -0.201 4.201 21 C 0.309 3.691 22 O -0.349 6.349 23 O -0.343 6.343 24 C -0.077 4.077 25 C -0.202 4.202 26 C -0.265 4.265 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.264 0.736 43 H 0.136 0.864 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.113 0.887 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.911 -3.488 20.178 22.332 hybrid contribution -0.286 0.194 -0.891 0.956 sum -9.196 -3.294 19.287 21.620 Atomic orbital electron populations 1.22240 0.96916 1.01376 1.02298 1.21401 0.93355 0.84219 1.02736 1.47940 1.65340 1.13211 1.06962 1.19582 0.97077 0.93389 0.80141 1.21335 0.95374 1.32558 1.06928 0.90838 1.24839 0.94944 0.95823 0.97385 1.69895 1.15151 1.45205 1.23577 0.86869 0.81561 0.81701 0.79669 1.19965 1.21195 1.19101 1.19979 0.78735 0.87216 0.84396 1.90685 1.43510 1.17496 1.86555 1.22119 1.01579 0.94511 0.91301 1.61607 1.06315 1.49853 1.01766 1.22063 1.00487 0.94588 0.88635 1.20983 1.02243 0.89623 0.96497 0.87573 1.21754 1.00359 1.02522 0.95504 1.23179 0.77321 0.85377 0.83227 1.90844 1.39567 1.84949 1.19533 1.84487 1.77938 1.21258 1.50657 1.22698 0.85783 0.95192 1.04070 1.23274 1.02463 1.02746 0.91703 1.23472 1.03713 0.98296 1.01001 0.92208 0.92144 0.93003 0.89859 0.91876 0.95529 0.94710 0.92686 0.88807 0.92229 0.90093 0.93030 0.91036 0.92014 0.91152 0.73631 0.86435 0.87973 0.88166 0.88718 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.71 5.96 -4.04 -0.02 1.68 16 3 N -0.60 -12.60 2.46 -175.07 -0.43 -13.03 16 4 C 0.22 5.49 4.23 -5.20 -0.02 5.47 16 5 C -0.52 -15.16 9.94 -34.44 -0.34 -15.50 16 6 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 9 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 16 10 H -0.27 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 13 C 0.51 10.80 5.47 -10.99 -0.06 10.74 16 14 O -0.51 -13.14 15.02 5.56 0.08 -13.06 16 15 C 0.04 0.57 3.65 -4.98 -0.02 0.55 16 16 N -0.47 -7.19 2.64 -228.09 -0.60 -7.79 16 17 C 0.07 0.76 4.03 -3.83 -0.02 0.75 16 18 C -0.07 -0.72 2.74 -91.77 -0.25 -0.97 16 19 H 0.11 0.97 7.64 -51.93 -0.40 0.57 16 20 C -0.14 -0.97 9.15 37.16 0.34 -0.63 16 21 C 0.47 5.92 7.44 36.01 0.27 6.19 16 22 O -0.47 -7.98 15.67 -18.76 -0.29 -8.28 16 23 O -0.53 -5.34 13.24 -39.23 -0.52 -5.86 16 24 C 0.03 0.48 4.82 -67.71 -0.33 0.15 16 25 C -0.16 -2.80 8.57 -26.73 -0.23 -3.02 16 26 C -0.23 -2.81 9.22 -26.74 -0.25 -3.06 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 30 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 32 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 33 H 0.03 0.95 6.85 -51.93 -0.36 0.60 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 35 H 0.09 1.30 6.95 -51.93 -0.36 0.94 16 36 H 0.06 0.85 5.03 -51.93 -0.26 0.59 16 37 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 38 H 0.05 0.47 6.95 -51.93 -0.36 0.11 16 39 H 0.07 0.47 8.00 -51.93 -0.42 0.05 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.41 2.77 9.10 45.56 0.41 3.19 16 43 H 0.12 1.78 8.12 -51.93 -0.42 1.36 16 44 H 0.10 1.97 4.85 -51.93 -0.25 1.72 16 45 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 46 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 47 H 0.09 0.99 7.16 -51.93 -0.37 0.62 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -37.46 374.68 -7.47 -44.93 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.81 Total: 4.68 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -0.64 Total: 2.52 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.26 Total: -48.05 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.73 Total: -27.20 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.46 -7.47 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737094337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.903 kcal (2) G-P(sol) polarization free energy of solvation -37.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds