Wall clock time and date at job start Fri Apr 10 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47035 * 2 1 4 4 C 1.46495 * 120.00003 * 270.00157 * 3 2 1 5 5 C 1.50699 * 109.47328 * 270.00165 * 4 3 2 6 6 H 1.08004 * 119.99645 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00571 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00349 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99476 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46925 * 90.00121 * 9 7 5 11 11 H 1.48498 * 109.46721 * 210.00020 * 9 7 5 12 12 H 1.48497 * 109.47208 * 330.00061 * 9 7 5 13 13 C 1.34774 * 119.99655 * 90.00111 * 3 2 1 14 14 O 1.21281 * 119.99353 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00218 * 0.27708 * 13 3 2 16 16 N 1.46900 * 109.47173 * 176.01334 * 15 13 3 17 17 C 1.46895 * 111.00248 * 162.46640 * 16 15 13 18 18 C 1.52995 * 109.47319 * 192.49977 * 17 16 15 19 19 H 1.09006 * 109.47457 * 293.78577 * 18 17 16 20 20 C 1.53007 * 109.47300 * 173.78760 * 18 17 16 21 21 C 1.50703 * 109.47359 * 53.79082 * 18 17 16 22 22 O 1.20832 * 119.99572 * 359.97438 * 21 18 17 23 23 O 1.34220 * 120.00427 * 180.02562 * 21 18 17 24 24 C 1.46902 * 110.99961 * 286.41961 * 16 15 13 25 25 C 1.53003 * 117.49898 * 5.89548 * 24 16 15 26 26 C 1.52992 * 59.99866 * 252.51227 * 25 24 16 27 27 H 1.09001 * 109.47509 * 59.99663 * 1 2 3 28 28 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47291 * 299.99606 * 1 2 3 30 30 H 1.09006 * 109.46884 * 240.00236 * 2 1 3 31 31 H 1.08996 * 109.47179 * 120.00025 * 2 1 3 32 32 H 1.09002 * 109.47476 * 29.99863 * 4 3 2 33 33 H 1.08998 * 109.47250 * 150.00080 * 4 3 2 34 34 H 0.97002 * 119.99959 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47002 * 296.00935 * 15 13 3 36 36 H 1.08997 * 109.47500 * 56.00925 * 15 13 3 37 37 H 1.08997 * 109.47276 * 312.49995 * 17 16 15 38 38 H 1.09004 * 109.47137 * 72.49889 * 17 16 15 39 39 H 1.08999 * 109.47268 * 184.63968 * 20 18 17 40 40 H 1.08992 * 109.46858 * 304.64225 * 20 18 17 41 41 H 1.09002 * 109.46675 * 64.63987 * 20 18 17 42 42 H 0.96698 * 117.00627 * 179.97438 * 23 21 18 43 43 H 1.08998 * 115.55191 * 151.59928 * 24 16 15 44 44 H 1.09002 * 117.49568 * 0.02562 * 25 24 16 45 45 H 1.08997 * 117.50225 * 145.01411 * 25 24 16 46 46 H 1.09009 * 117.49439 * 252.50943 * 26 25 24 47 47 H 1.08997 * 117.50262 * 107.49319 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 5.3912 2.1834 -3.2574 9 14 3.0129 3.4361 -3.9287 10 1 3.1156 4.8562 -3.5068 11 1 3.4065 3.3138 -5.3553 12 1 1.6134 2.9694 -3.7596 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9977 1.3040 2.4723 16 7 2.4047 2.1699 3.5869 17 6 1.8159 1.7112 4.8521 18 6 1.9969 2.7914 5.9203 19 1 3.0576 2.9080 6.1431 20 6 1.2508 2.3817 7.1917 21 6 1.4438 4.0980 5.4123 22 8 0.9553 4.1589 4.3088 23 8 1.4947 5.1942 6.1851 24 6 3.8683 2.2485 3.6854 25 6 4.6877 1.5717 2.5847 26 6 4.6268 0.9535 3.9829 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 5.7172 2.5740 -4.0834 35 1 0.9375 1.0681 2.5638 36 1 2.5786 0.3820 2.4976 37 1 0.7530 1.5166 4.7088 38 1 2.3128 0.7957 5.1733 39 1 1.3106 3.1872 7.9236 40 1 0.2058 2.1852 6.9523 41 1 1.7046 1.4809 7.6049 42 1 1.1277 6.0091 5.8160 43 1 4.2620 3.1715 4.1109 44 1 4.1407 1.0685 1.7874 45 1 5.6206 2.0495 2.2858 46 1 5.5198 1.0247 4.6039 47 1 4.0399 0.0433 4.1057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737094337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:50 Heat of formation + Delta-G solvation = -102.233064 kcal Electronic energy + Delta-G solvation = -27933.394283 eV Core-core repulsion = 24117.074104 eV Total energy + Delta-G solvation = -3816.320179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.56691 -40.87244 -39.24196 -36.92311 -36.80448 -35.69305 -34.87633 -33.53961 -31.86682 -30.18983 -28.40246 -25.99812 -25.33946 -24.43579 -23.98167 -23.23094 -21.97709 -20.46520 -19.63559 -19.09446 -18.81663 -18.20083 -17.95735 -17.37742 -17.14765 -16.44958 -16.27490 -16.00811 -15.44954 -15.13367 -14.78677 -14.68030 -14.55537 -14.44931 -14.19742 -13.78297 -13.75045 -13.43110 -13.22611 -13.02738 -12.91820 -12.76237 -12.70589 -12.52703 -12.40388 -12.30807 -12.20518 -12.04180 -11.90390 -11.84849 -11.74263 -11.62380 -11.14140 -11.07954 -10.83821 -10.50814 -9.33119 -9.05822 -8.34620 -6.37944 1.28855 1.33478 1.41513 1.54623 1.95340 2.21037 2.29229 2.33737 2.84228 2.92300 2.99902 3.64799 3.73378 3.86919 3.93565 3.95905 4.06531 4.15726 4.22262 4.31417 4.32947 4.44169 4.58007 4.63882 4.68599 4.71133 4.79660 4.82030 4.92805 4.93923 4.98899 4.99454 5.00884 5.10603 5.12005 5.13349 5.36027 5.37920 5.47565 5.70399 5.86172 5.94133 6.17095 6.27277 6.62503 6.82162 7.23371 7.25531 7.60141 8.82247 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.003936 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.266291 B = 7112.076839 C = 7183.933492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.608 5.608 4 C 0.229 3.771 5 C -0.527 4.527 6 H 0.030 0.970 7 C 0.013 3.987 8 N -0.944 5.944 9 Si 0.943 3.057 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.242 1.242 13 C 0.503 3.497 14 O -0.570 6.570 15 C 0.051 3.949 16 N -0.498 5.498 17 C 0.069 3.931 18 C -0.072 4.072 19 H 0.115 0.885 20 C -0.135 4.135 21 C 0.469 3.531 22 O -0.521 6.521 23 O -0.525 6.525 24 C 0.031 3.969 25 C -0.207 4.207 26 C -0.174 4.174 27 H 0.043 0.957 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.009 0.991 34 H 0.267 0.733 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.418 0.582 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 -6.076 23.026 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.341 5.341 4 C 0.107 3.893 5 C -0.566 4.566 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.585 5.585 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.197 1.197 12 H -0.165 1.165 13 C 0.291 3.709 14 O -0.448 6.448 15 C -0.079 4.079 16 N -0.221 5.221 17 C -0.057 4.057 18 C -0.091 4.091 19 H 0.133 0.867 20 C -0.193 4.193 21 C 0.311 3.689 22 O -0.407 6.407 23 O -0.338 6.338 24 C -0.078 4.078 25 C -0.245 4.245 26 C -0.213 4.213 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.278 0.722 43 H 0.127 0.873 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.081 -5.316 22.639 25.760 hybrid contribution 0.466 0.771 -1.564 1.805 sum -10.615 -4.545 21.074 24.030 Atomic orbital electron populations 1.22157 0.94147 1.03598 1.01892 1.21734 0.95534 0.81364 1.03670 1.48066 1.65284 1.15085 1.05698 1.19188 0.94788 0.92602 0.82743 1.21530 0.96904 1.31715 1.06441 0.95126 1.25776 0.96612 0.97163 0.98950 1.70039 1.17258 1.46695 1.24476 0.85783 0.80551 0.78993 0.78021 1.20638 1.19708 1.16492 1.21044 0.77001 0.86774 0.86058 1.90642 1.46189 1.20364 1.87568 1.21986 1.03300 0.94202 0.88462 1.61486 1.06212 1.50955 1.03414 1.22226 1.00800 0.95946 0.86775 1.21120 1.02938 0.87720 0.97351 0.86728 1.21739 1.00191 1.03611 0.93756 1.23895 0.75949 0.86570 0.82481 1.90832 1.42269 1.85842 1.21793 1.84467 1.77553 1.21630 1.50186 1.22625 0.86206 0.96349 1.02598 1.23101 1.02042 1.05807 0.93506 1.23547 1.03717 0.97605 0.96434 0.93733 0.88524 0.92300 0.91031 0.88936 0.93851 0.97284 0.92362 0.86294 0.90278 0.89535 0.89990 0.90816 0.91864 0.88710 0.72218 0.87295 0.90722 0.90909 0.86425 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.03 16 2 C 0.10 3.03 5.96 86.38 0.51 3.55 16 3 N -0.61 -25.96 2.46 -826.18 -2.03 -27.99 16 4 C 0.23 11.84 4.23 85.63 0.36 12.21 16 5 C -0.53 -32.06 9.94 25.60 0.25 -31.80 16 6 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 7 C 0.01 0.78 5.47 84.66 0.46 1.25 16 8 N -0.94 -61.10 13.96 21.45 0.30 -60.80 16 9 Si 0.94 46.60 27.47 68.60 1.88 48.48 16 10 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.24 -10.87 6.54 99.48 0.65 -10.22 16 13 C 0.50 21.74 5.47 87.66 0.48 22.22 16 14 O -0.57 -31.05 15.02 -3.03 -0.05 -31.09 16 15 C 0.05 1.54 3.65 85.56 0.31 1.85 16 16 N -0.50 -14.47 2.64 -875.55 -2.31 -16.78 16 17 C 0.07 1.27 4.03 86.30 0.35 1.62 16 18 C -0.07 -1.19 2.74 -11.54 -0.03 -1.22 16 19 H 0.11 1.74 7.64 -2.38 -0.02 1.72 16 20 C -0.14 -1.31 9.15 71.98 0.66 -0.65 16 21 C 0.47 11.35 7.44 71.24 0.53 11.88 16 22 O -0.52 -17.91 15.67 21.95 0.34 -17.57 16 23 O -0.52 -9.97 13.24 -51.32 -0.68 -10.65 16 24 C 0.03 0.92 4.82 44.91 0.22 1.14 16 25 C -0.21 -7.29 8.57 30.59 0.26 -7.03 16 26 C -0.17 -3.88 9.22 30.59 0.28 -3.60 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.32 7.35 -2.39 -0.02 1.30 16 30 H 0.07 2.34 8.07 -2.38 -0.02 2.32 16 31 H 0.09 2.26 6.33 -2.39 -0.02 2.24 16 32 H 0.04 2.08 7.13 -2.39 -0.02 2.06 16 33 H 0.01 0.51 6.85 -2.39 -0.02 0.50 16 34 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 35 H 0.12 2.94 6.95 -2.38 -0.02 2.92 16 36 H 0.08 2.05 5.03 -2.39 -0.01 2.04 16 37 H 0.09 1.52 7.79 -2.39 -0.02 1.50 16 38 H 0.08 1.04 6.95 -2.39 -0.02 1.02 16 39 H 0.07 0.71 8.00 -2.39 -0.02 0.69 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.42 5.49 9.10 -74.06 -0.67 4.82 16 43 H 0.11 3.34 8.12 -2.39 -0.02 3.32 16 44 H 0.07 3.03 4.85 -2.39 -0.01 3.01 16 45 H 0.07 2.85 8.14 -2.39 -0.02 2.84 16 46 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.11 2.00 7.16 -2.39 -0.02 1.98 16 Total: -1.00 -89.16 374.68 3.09 -86.07 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.25 Total: 21.95 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.39 Total: 8.39 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.04 Total: -105.57 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -0.38 Total: -59.31 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.88 Total: 48.48 kcal Total: -89.16 3.09 -86.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737094337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.166 kcal (2) G-P(sol) polarization free energy of solvation -89.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds