Wall clock time and date at job start Fri Apr 10 2020 18:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47076 * 2 1 4 4 C 1.50699 * 109.47310 * 120.00071 * 2 1 3 5 5 O 1.20824 * 119.99936 * 124.81684 * 4 2 1 6 6 O 1.34229 * 119.99580 * 304.81862 * 4 2 1 7 7 C 1.45206 * 116.99318 * 180.02562 * 6 4 2 8 8 C 1.50702 * 109.46782 * 179.97438 * 7 6 4 9 9 O 1.21281 * 119.99966 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00022 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00125 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47002 * 179.97438 * 11 10 8 13 13 H 1.07994 * 119.99934 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99551 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00287 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99745 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47223 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47157 * 120.00068 * 16 14 12 19 19 H 1.48499 * 109.47486 * 240.00479 * 16 14 12 20 20 N 1.46901 * 109.46642 * 239.99996 * 2 1 3 21 21 C 1.48810 * 111.18406 * 320.00728 * 20 2 1 22 22 H 1.08995 * 110.52372 * 41.07664 * 21 20 2 23 23 C 1.52998 * 110.83915 * 278.08948 * 21 20 2 24 24 C 1.54940 * 103.34873 * 159.51034 * 21 20 2 25 25 C 1.54603 * 102.91904 * 322.68846 * 24 21 20 26 26 C 1.47905 * 111.00229 * 77.34402 * 20 2 1 27 27 H 1.09001 * 109.91117 * 333.70421 * 26 20 2 28 28 C 1.52994 * 109.91897 * 94.79995 * 26 20 2 29 29 H 1.08991 * 109.47408 * 68.35359 * 1 2 3 30 30 H 1.08996 * 109.46781 * 188.35788 * 1 2 3 31 31 H 1.09008 * 109.46657 * 308.35276 * 1 2 3 32 32 H 1.08993 * 109.47036 * 299.99482 * 7 6 4 33 33 H 1.08999 * 109.47504 * 60.00057 * 7 6 4 34 34 H 0.97004 * 120.00245 * 359.97438 * 10 8 7 35 35 H 1.08993 * 109.46895 * 299.99685 * 11 10 8 36 36 H 1.08999 * 109.46968 * 59.99847 * 11 10 8 37 37 H 0.97003 * 120.00033 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.47552 * 313.89022 * 23 21 20 39 39 H 1.09002 * 109.47441 * 73.89318 * 23 21 20 40 40 H 1.09005 * 109.47422 * 193.89004 * 23 21 20 41 41 H 1.08996 * 110.72496 * 204.33734 * 24 21 20 42 42 H 1.08999 * 110.87972 * 81.11734 * 24 21 20 43 43 H 1.08996 * 110.30529 * 263.04410 * 25 24 21 44 44 H 1.08994 * 110.30859 * 140.87773 * 25 24 21 45 45 H 1.08993 * 109.47521 * 174.68734 * 28 26 20 46 46 H 1.09005 * 109.46828 * 54.68325 * 28 26 20 47 47 H 1.09005 * 109.47317 * 294.68867 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7971 -1.6396 1.1217 6 8 1.6304 -0.3109 2.4472 7 6 2.1552 -1.0409 3.5874 8 6 1.5979 -0.4546 4.8589 9 8 0.8342 0.4862 4.8091 10 7 1.9483 -0.9756 6.0514 11 6 1.4071 -0.4052 7.2876 12 6 1.9506 -1.1638 8.4709 13 1 2.6308 -1.9885 8.3175 14 6 1.5795 -0.8048 9.7494 15 7 0.7508 0.1991 9.9361 16 14 2.2527 -1.7455 11.2161 17 1 3.1580 -2.8222 10.7405 18 1 3.0077 -0.8170 12.0954 19 1 1.1280 -2.3446 11.9786 20 7 2.0196 -0.6925 -1.1995 21 6 1.1966 -1.8954 -1.4995 22 1 0.1388 -1.6832 -1.3441 23 6 1.6383 -3.0844 -0.6438 24 6 1.4864 -2.1626 -2.9979 25 6 1.5843 -0.7379 -3.5904 26 6 1.9111 0.1739 -2.3932 27 1 1.1123 0.9020 -2.2521 28 6 3.2377 0.8964 -2.6353 29 1 -0.3634 0.3790 -0.9551 30 1 -0.3633 -1.0167 0.1494 31 1 -0.3633 0.6377 0.8060 32 1 1.8651 -2.0889 3.5126 33 1 3.2424 -0.9647 3.5985 34 1 2.5589 -1.7283 6.0913 35 1 1.6983 0.6424 7.3622 36 1 0.3197 -0.4802 7.2767 37 1 0.4894 0.4514 10.8355 38 1 2.7256 -3.1603 -0.6608 39 1 1.3002 -2.9392 0.3822 40 1 1.2039 -4.0009 -1.0433 41 1 0.6668 -2.7155 -3.4567 42 1 2.4279 -2.6975 -3.1221 43 1 0.6336 -0.4483 -4.0381 44 1 2.3823 -0.6903 -4.3312 45 1 3.1806 1.4584 -3.5674 46 1 4.0432 0.1648 -2.7008 47 1 3.4348 1.5807 -1.8100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741022169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:58 Heat of formation + Delta-G solvation = -115.896865 kcal Electronic energy + Delta-G solvation = -26502.019871 eV Core-core repulsion = 22685.107185 eV Total energy + Delta-G solvation = -3816.912686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01907 -39.62121 -38.57083 -36.22756 -34.24775 -34.08570 -32.85815 -32.41176 -29.65858 -28.93809 -28.22699 -26.74465 -24.94063 -24.17719 -22.63458 -21.39923 -20.73209 -19.92787 -19.45258 -17.72924 -17.47027 -16.89303 -16.69021 -15.86759 -15.52986 -15.19489 -15.06760 -14.90551 -14.77069 -14.20195 -14.05400 -13.45945 -13.32003 -13.04031 -13.00738 -12.81598 -12.58760 -12.51110 -12.23101 -12.11831 -12.00899 -11.91401 -11.75527 -11.58757 -11.38259 -11.02987 -10.99194 -10.97139 -10.91480 -10.72265 -10.49989 -10.35207 -10.18628 -9.42824 -9.16849 -8.79248 -8.73183 -7.98983 -6.20382 -4.27625 2.22380 2.34261 3.18737 3.21987 3.29186 3.32235 3.55013 3.97642 4.17539 4.31151 4.37421 4.55904 4.67244 4.70074 4.80283 4.84028 5.01522 5.06872 5.14349 5.15931 5.26137 5.26630 5.31595 5.32913 5.35792 5.41703 5.47644 5.53136 5.58152 5.59253 5.79201 5.83686 5.85478 5.95407 5.98365 6.26150 6.44823 6.63626 6.67076 7.22445 7.31215 7.45254 7.60121 7.82273 7.91369 8.50173 8.71085 8.96655 9.38862 10.89804 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.034970 B = 0.002250 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.493598 B =12440.519507 C =12705.685431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.118 0.882 4 C 0.461 3.539 5 O -0.482 6.482 6 O -0.331 6.331 7 C 0.051 3.949 8 C 0.500 3.500 9 O -0.535 6.535 10 N -0.707 5.707 11 C 0.251 3.749 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.491 5.491 21 C 0.051 3.949 22 H 0.065 0.935 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.126 4.126 26 C 0.062 3.938 27 H 0.057 0.943 28 C -0.137 4.137 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.393 0.607 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 -2.971 -27.538 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.023 4.023 3 H 0.136 0.864 4 C 0.302 3.698 5 O -0.368 6.368 6 O -0.246 6.246 7 C -0.027 4.027 8 C 0.283 3.717 9 O -0.412 6.412 10 N -0.357 5.357 11 C 0.131 3.869 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 N -0.216 5.216 21 C -0.057 4.057 22 H 0.083 0.917 23 C -0.188 4.188 24 C -0.155 4.155 25 C -0.164 4.164 26 C -0.046 4.046 27 H 0.075 0.925 28 C -0.195 4.195 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.878 -2.596 -27.280 27.467 hybrid contribution -0.106 -0.634 0.931 1.132 sum 1.772 -3.230 -26.349 26.605 Atomic orbital electron populations 1.22382 0.94075 1.03814 1.03761 1.21274 0.95104 0.98512 0.87454 0.86424 1.23408 0.79215 0.82584 0.84588 1.90664 1.32217 1.27082 1.86816 1.86551 1.66368 1.57533 1.14189 1.22817 0.99904 0.96422 0.83564 1.19910 0.82754 0.84531 0.84545 1.90702 1.35534 1.27908 1.87084 1.46370 1.47883 1.35096 1.06378 1.19175 0.94874 0.94623 0.78256 1.21246 1.29340 1.16984 0.90682 0.91712 1.24956 0.94835 0.95126 0.99121 1.69980 1.32852 1.26949 1.22414 0.86337 0.78778 0.79651 0.82004 1.19599 1.20764 1.20768 1.64622 1.50988 1.05325 1.00710 1.23057 0.96071 0.91215 0.95310 0.91691 1.21761 1.03165 0.95109 0.98732 1.22503 1.02338 0.96564 0.94133 1.22455 1.01866 0.94957 0.97145 1.22382 0.98055 0.94586 0.89550 0.92464 1.21786 0.96702 0.99967 1.01006 0.91212 0.91318 0.89775 0.88737 0.88615 0.77435 0.95266 0.95285 0.92429 0.90721 0.92942 0.93152 0.91107 0.90561 0.91442 0.90666 0.92309 0.91654 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 7.67 37.16 0.29 -1.39 16 2 C 0.09 0.92 2.71 -68.86 -0.19 0.73 16 3 H 0.12 1.12 7.98 -51.93 -0.41 0.71 16 4 C 0.46 6.30 6.43 36.01 0.23 6.53 16 5 O -0.48 -7.22 12.58 -18.75 -0.24 -7.46 16 6 O -0.33 -5.22 9.59 -45.90 -0.44 -5.66 16 7 C 0.05 0.78 5.94 36.01 0.21 0.99 16 8 C 0.50 10.04 7.91 -10.99 -0.09 9.95 16 9 O -0.53 -13.05 16.50 -14.10 -0.23 -13.28 16 10 N -0.71 -14.67 5.55 -61.47 -0.34 -15.01 16 11 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 12 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 13 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 15 N -0.88 -25.83 13.29 55.43 0.74 -25.10 16 16 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 N -0.49 -4.82 4.24 -208.09 -0.88 -5.70 16 21 C 0.05 0.46 2.45 -65.63 -0.16 0.30 16 22 H 0.07 0.56 5.34 -51.93 -0.28 0.29 16 23 C -0.13 -1.37 7.77 37.16 0.29 -1.08 16 24 C -0.12 -0.85 6.50 -24.86 -0.16 -1.01 16 25 C -0.13 -0.80 6.57 -25.37 -0.17 -0.97 16 26 C 0.06 0.47 2.76 -66.65 -0.18 0.29 16 27 H 0.06 0.40 6.68 -51.93 -0.35 0.06 16 28 C -0.14 -0.99 9.32 37.15 0.35 -0.65 16 29 H 0.07 0.51 6.87 -51.93 -0.36 0.16 16 30 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 31 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.07 0.91 7.55 -51.93 -0.39 0.52 16 39 H 0.05 0.64 6.21 -51.93 -0.32 0.32 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.43 7.69 -51.93 -0.40 0.04 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -32.73 375.53 -8.57 -41.30 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.79 Total: 2.60 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.03 Total: 6.98 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.49 Total: -45.81 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.91 Total: -26.40 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.73 -8.57 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741022169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.595 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds