Wall clock time and date at job start Fri Apr 10 2020 18:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47076 * 2 1 4 4 C 1.50699 * 109.47310 * 120.00071 * 2 1 3 5 5 O 1.20824 * 119.99936 * 124.81684 * 4 2 1 6 6 O 1.34229 * 119.99580 * 304.81862 * 4 2 1 7 7 C 1.45206 * 116.99318 * 180.02562 * 6 4 2 8 8 C 1.50702 * 109.46782 * 179.97438 * 7 6 4 9 9 O 1.21281 * 119.99966 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00022 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00125 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47002 * 179.97438 * 11 10 8 13 13 H 1.07994 * 119.99934 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99551 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00287 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99745 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47223 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47157 * 120.00068 * 16 14 12 19 19 H 1.48499 * 109.47486 * 240.00479 * 16 14 12 20 20 N 1.46901 * 109.46642 * 239.99996 * 2 1 3 21 21 C 1.48810 * 111.18406 * 320.00728 * 20 2 1 22 22 H 1.08995 * 110.52372 * 41.07664 * 21 20 2 23 23 C 1.52998 * 110.83915 * 278.08948 * 21 20 2 24 24 C 1.54940 * 103.34873 * 159.51034 * 21 20 2 25 25 C 1.54603 * 102.91904 * 322.68846 * 24 21 20 26 26 C 1.47905 * 111.00229 * 77.34402 * 20 2 1 27 27 H 1.09001 * 109.91117 * 333.70421 * 26 20 2 28 28 C 1.52994 * 109.91897 * 94.79995 * 26 20 2 29 29 H 1.08991 * 109.47408 * 68.35359 * 1 2 3 30 30 H 1.08996 * 109.46781 * 188.35788 * 1 2 3 31 31 H 1.09008 * 109.46657 * 308.35276 * 1 2 3 32 32 H 1.08993 * 109.47036 * 299.99482 * 7 6 4 33 33 H 1.08999 * 109.47504 * 60.00057 * 7 6 4 34 34 H 0.97004 * 120.00245 * 359.97438 * 10 8 7 35 35 H 1.08993 * 109.46895 * 299.99685 * 11 10 8 36 36 H 1.08999 * 109.46968 * 59.99847 * 11 10 8 37 37 H 0.97003 * 120.00033 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.47552 * 313.89022 * 23 21 20 39 39 H 1.09002 * 109.47441 * 73.89318 * 23 21 20 40 40 H 1.09005 * 109.47422 * 193.89004 * 23 21 20 41 41 H 1.08996 * 110.72496 * 204.33734 * 24 21 20 42 42 H 1.08999 * 110.87972 * 81.11734 * 24 21 20 43 43 H 1.08996 * 110.30529 * 263.04410 * 25 24 21 44 44 H 1.08994 * 110.30859 * 140.87773 * 25 24 21 45 45 H 1.08993 * 109.47521 * 174.68734 * 28 26 20 46 46 H 1.09005 * 109.46828 * 54.68325 * 28 26 20 47 47 H 1.09005 * 109.47317 * 294.68867 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7971 -1.6396 1.1217 6 8 1.6304 -0.3109 2.4472 7 6 2.1552 -1.0409 3.5874 8 6 1.5979 -0.4546 4.8589 9 8 0.8342 0.4862 4.8091 10 7 1.9483 -0.9756 6.0514 11 6 1.4071 -0.4052 7.2876 12 6 1.9506 -1.1638 8.4709 13 1 2.6308 -1.9885 8.3175 14 6 1.5795 -0.8048 9.7494 15 7 0.7508 0.1991 9.9361 16 14 2.2527 -1.7455 11.2161 17 1 3.1580 -2.8222 10.7405 18 1 3.0077 -0.8170 12.0954 19 1 1.1280 -2.3446 11.9786 20 7 2.0196 -0.6925 -1.1995 21 6 1.1966 -1.8954 -1.4995 22 1 0.1388 -1.6832 -1.3441 23 6 1.6383 -3.0844 -0.6438 24 6 1.4864 -2.1626 -2.9979 25 6 1.5843 -0.7379 -3.5904 26 6 1.9111 0.1739 -2.3932 27 1 1.1123 0.9020 -2.2521 28 6 3.2377 0.8964 -2.6353 29 1 -0.3634 0.3790 -0.9551 30 1 -0.3633 -1.0167 0.1494 31 1 -0.3633 0.6377 0.8060 32 1 1.8651 -2.0889 3.5126 33 1 3.2424 -0.9647 3.5985 34 1 2.5589 -1.7283 6.0913 35 1 1.6983 0.6424 7.3622 36 1 0.3197 -0.4802 7.2767 37 1 0.4894 0.4514 10.8355 38 1 2.7256 -3.1603 -0.6608 39 1 1.3002 -2.9392 0.3822 40 1 1.2039 -4.0009 -1.0433 41 1 0.6668 -2.7155 -3.4567 42 1 2.4279 -2.6975 -3.1221 43 1 0.6336 -0.4483 -4.0381 44 1 2.3823 -0.6903 -4.3312 45 1 3.1806 1.4584 -3.5674 46 1 4.0432 0.1648 -2.7008 47 1 3.4348 1.5807 -1.8100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741022169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:57 Heat of formation + Delta-G solvation = -137.694019 kcal Electronic energy + Delta-G solvation = -26502.965067 eV Core-core repulsion = 22685.107185 eV Total energy + Delta-G solvation = -3817.857881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01745 -40.73986 -39.99479 -37.42564 -36.18968 -34.82496 -34.42280 -33.51877 -30.94205 -29.92901 -28.97268 -28.48489 -25.92591 -24.78201 -24.55924 -22.38273 -21.65408 -21.37189 -20.24301 -19.25128 -18.59260 -18.12735 -17.86708 -17.36711 -17.04135 -16.67062 -16.28807 -15.92235 -15.76470 -15.48852 -15.10894 -14.69470 -14.37747 -14.15188 -14.08819 -13.93687 -13.71045 -13.64228 -13.49474 -13.24863 -12.95841 -12.88992 -12.86236 -12.76289 -12.63232 -12.30596 -12.23456 -12.11255 -11.89659 -11.58986 -11.49714 -11.47903 -11.28492 -11.19905 -10.89936 -10.84042 -9.94261 -9.42968 -8.30693 -6.47151 1.15527 1.20538 1.44043 1.44302 1.54377 1.58106 2.31914 2.52039 2.89114 3.04618 3.53245 3.58512 3.70723 3.83717 3.88462 4.00484 4.04156 4.07116 4.12469 4.18279 4.41243 4.43882 4.59553 4.60910 4.70830 4.76903 4.83551 4.90641 4.93014 5.04964 5.06088 5.10830 5.13603 5.20738 5.27004 5.27741 5.34128 5.40857 5.42490 5.49709 5.62312 5.81122 5.93286 5.99516 6.61647 6.68758 6.79872 7.19361 7.34436 8.81644 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.034970 B = 0.002250 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.493598 B =12440.519507 C =12705.685431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.089 3.911 3 H 0.128 0.872 4 C 0.461 3.539 5 O -0.497 6.497 6 O -0.350 6.350 7 C 0.063 3.937 8 C 0.500 3.500 9 O -0.582 6.582 10 N -0.699 5.699 11 C 0.266 3.734 12 C -0.556 4.556 13 H 0.085 0.915 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.985 3.015 17 H -0.253 1.253 18 H -0.279 1.279 19 H -0.279 1.279 20 N -0.506 5.506 21 C 0.047 3.953 22 H 0.072 0.928 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.121 4.121 26 C 0.059 3.941 27 H 0.068 0.932 28 C -0.135 4.135 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.412 0.588 35 H -0.008 1.008 36 H -0.007 1.007 37 H 0.269 0.731 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -4.266 -29.068 29.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.021 4.021 3 H 0.145 0.855 4 C 0.303 3.697 5 O -0.383 6.383 6 O -0.265 6.265 7 C -0.014 4.014 8 C 0.286 3.714 9 O -0.463 6.463 10 N -0.351 5.351 11 C 0.144 3.856 12 C -0.594 4.594 13 H 0.103 0.897 14 C -0.196 4.196 15 N -0.568 5.568 16 Si 0.808 3.192 17 H -0.177 1.177 18 H -0.205 1.205 19 H -0.205 1.205 20 N -0.232 5.232 21 C -0.060 4.060 22 H 0.090 0.910 23 C -0.182 4.182 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.049 4.049 27 H 0.086 0.914 28 C -0.192 4.192 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.248 0.752 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.666 -3.928 -28.853 29.241 hybrid contribution -0.342 -0.211 1.332 1.392 sum 2.324 -4.139 -27.521 27.927 Atomic orbital electron populations 1.22333 0.93014 1.03374 1.04586 1.21351 0.95831 0.98512 0.86421 0.85481 1.24087 0.78747 0.82454 0.84463 1.90657 1.32997 1.27850 1.86808 1.86558 1.66957 1.58080 1.14942 1.22656 1.00691 0.96837 0.81247 1.20684 0.81535 0.83502 0.85682 1.90678 1.37636 1.30097 1.87882 1.46056 1.48127 1.35595 1.05311 1.18633 0.92889 0.93171 0.80896 1.21633 1.29488 1.17372 0.90870 0.89653 1.26053 0.94899 0.95969 1.02663 1.70134 1.34419 1.28873 1.23390 0.85102 0.78188 0.78366 0.77504 1.17687 1.20481 1.20457 1.64605 1.51422 1.06009 1.01130 1.23107 0.96255 0.90390 0.96279 0.90986 1.21678 1.01726 0.96743 0.98040 1.22483 1.02526 0.97361 0.92796 1.22459 1.02985 0.93829 0.96630 1.22504 0.98492 0.94776 0.89090 0.91430 1.21778 0.96195 0.99609 1.01647 0.88869 0.91808 0.90964 0.86274 0.86241 0.75186 0.98959 0.98942 0.92188 0.92776 0.94985 0.91718 0.89532 0.91391 0.89845 0.89966 0.90492 0.92908 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 7.67 71.98 0.55 -2.45 16 2 C 0.09 1.79 2.71 44.17 0.12 1.91 16 3 H 0.13 2.29 7.98 -2.39 -0.02 2.27 16 4 C 0.46 12.32 6.43 71.24 0.46 12.78 16 5 O -0.50 -14.60 12.58 21.97 0.28 -14.32 16 6 O -0.35 -10.90 9.59 -45.05 -0.43 -11.33 16 7 C 0.06 1.87 5.94 71.24 0.42 2.29 16 8 C 0.50 20.34 7.91 87.66 0.69 21.03 16 9 O -0.58 -29.46 16.50 15.77 0.26 -29.20 16 10 N -0.70 -29.25 5.55 -466.78 -2.59 -31.84 16 11 C 0.27 14.47 5.43 85.63 0.46 14.93 16 12 C -0.56 -29.87 9.28 25.60 0.24 -29.64 16 13 H 0.09 4.14 7.60 -2.91 -0.02 4.11 16 14 C 0.00 0.21 5.46 84.66 0.46 0.68 16 15 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 16 Si 0.99 42.04 29.54 68.60 2.03 44.06 16 17 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 20 N -0.51 -9.23 4.24 -812.26 -3.44 -12.67 16 21 C 0.05 0.78 2.45 45.21 0.11 0.89 16 22 H 0.07 1.10 5.34 -2.39 -0.01 1.09 16 23 C -0.12 -2.54 7.77 71.98 0.56 -1.98 16 24 C -0.11 -1.39 6.50 31.80 0.21 -1.18 16 25 C -0.12 -1.20 6.57 31.47 0.21 -0.99 16 26 C 0.06 0.76 2.76 45.05 0.12 0.89 16 27 H 0.07 0.75 6.68 -2.39 -0.02 0.74 16 28 C -0.13 -1.72 9.32 71.98 0.67 -1.05 16 29 H 0.09 1.15 6.87 -2.39 -0.02 1.13 16 30 H 0.06 1.16 6.58 -2.39 -0.02 1.14 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.12 3.00 8.13 -2.39 -0.02 2.98 16 33 H 0.12 3.04 8.13 -2.39 -0.02 3.02 16 34 H 0.41 13.97 8.32 -92.71 -0.77 13.19 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.05 1.31 7.55 -2.39 -0.02 1.30 16 39 H 0.03 0.76 6.21 -2.39 -0.01 0.75 16 40 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.95 8.06 -2.39 -0.02 0.93 16 43 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 0.72 7.69 -2.39 -0.02 0.70 16 45 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -73.17 375.53 1.87 -71.30 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.19 Total: 21.22 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 5.29 Total: 18.11 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -5.75 Total: -99.84 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: 0.10 Total: -54.86 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -73.17 1.87 -71.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741022169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.389 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds