Wall clock time and date at job start Fri Apr 10 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47100 * 2 1 4 4 O 1.45196 * 109.47281 * 120.00295 * 2 1 3 5 5 C 1.34238 * 116.99691 * 269.99911 * 4 2 1 6 6 O 1.20818 * 120.00274 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99719 * 180.02562 * 5 4 2 8 8 H 1.09004 * 109.46490 * 39.97885 * 7 5 4 9 9 C 1.53038 * 109.46439 * 279.99876 * 7 5 4 10 10 C 1.53120 * 109.28222 * 180.80913 * 9 7 5 11 11 C 1.53115 * 109.16244 * 57.65146 * 10 9 7 12 12 C 1.53042 * 109.27767 * 302.35013 * 11 10 9 13 13 N 1.46845 * 109.46237 * 159.94377 * 7 5 4 14 14 C 1.46894 * 111.00164 * 305.85800 * 13 7 5 15 15 C 1.50703 * 109.46928 * 239.99853 * 2 1 3 16 16 O 1.21278 * 120.00174 * 244.99799 * 15 2 1 17 17 N 1.34776 * 119.99703 * 65.00052 * 15 2 1 18 18 C 1.46502 * 120.00331 * 359.97438 * 17 15 2 19 19 C 1.46506 * 119.99904 * 179.97438 * 17 15 2 20 20 C 1.50700 * 109.46957 * 89.99954 * 19 17 15 21 21 H 1.08002 * 119.99770 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00083 * 180.02562 * 20 19 17 23 23 N 1.31514 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 300.00001 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00094 * 24 22 20 28 28 H 1.09004 * 109.46893 * 299.99656 * 1 2 3 29 29 H 1.08991 * 109.47507 * 59.99918 * 1 2 3 30 30 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.49928 * 300.74844 * 9 7 5 32 32 H 1.08998 * 109.50409 * 60.82309 * 9 7 5 33 33 H 1.08996 * 109.52275 * 177.56135 * 10 9 7 34 34 H 1.09004 * 109.52019 * 297.68642 * 10 9 7 35 35 H 1.08996 * 109.50179 * 62.28463 * 11 10 9 36 36 H 1.08994 * 109.50381 * 182.36730 * 11 10 9 37 37 H 1.09004 * 109.46257 * 179.19354 * 12 11 10 38 38 H 1.09002 * 109.46126 * 299.17100 * 12 11 10 39 39 H 1.08995 * 109.47571 * 59.99175 * 14 13 7 40 40 H 1.08997 * 109.47503 * 179.97438 * 14 13 7 41 41 H 1.09003 * 109.47259 * 299.99398 * 14 13 7 42 42 H 1.08992 * 109.47400 * 270.00210 * 18 17 15 43 43 H 1.09007 * 109.46890 * 30.00395 * 18 17 15 44 44 H 1.09001 * 109.47046 * 149.99537 * 18 17 15 45 45 H 1.08994 * 109.47197 * 330.00343 * 19 17 15 46 46 H 1.08998 * 109.47414 * 210.00023 * 19 17 15 47 47 H 0.97005 * 119.99661 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0640 2.2811 6 8 1.9983 1.2518 2.2504 7 6 2.7194 -0.5771 3.5491 8 1 3.4768 -1.3217 3.3043 9 6 1.5543 -1.2542 4.2743 10 6 2.0653 -1.8867 5.5718 11 6 2.7156 -0.8035 6.4368 12 6 3.8472 -0.1395 5.6488 13 7 3.3071 0.4509 4.4175 14 6 4.3384 1.2160 3.7042 15 6 2.0323 -0.7105 -1.2305 16 8 2.6529 -1.7467 -1.1215 17 7 1.7918 -0.1942 -2.4520 18 6 1.0416 1.0573 -2.5837 19 6 2.2806 -0.8845 -3.6482 20 6 1.2344 -1.8563 -4.1300 21 1 0.2988 -1.9500 -3.5986 22 6 1.4715 -2.6258 -5.2492 23 7 2.6110 -2.5121 -5.8960 24 14 0.1745 -3.8299 -5.8469 25 1 0.6699 -4.5297 -7.0593 26 1 -0.1064 -4.8246 -4.7806 27 1 -1.0715 -3.0921 -6.1763 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7903 -0.5124 4.5074 32 1 1.1278 -2.0273 3.6352 33 1 1.2308 -2.3327 6.1128 34 1 2.8003 -2.6566 5.3368 35 1 1.9700 -0.0547 6.7038 36 1 3.1188 -1.2551 7.3432 37 1 4.3030 0.6421 6.2568 38 1 4.5991 -0.8863 5.3939 39 1 3.8941 1.7037 2.8366 40 1 4.7568 1.9707 4.3701 41 1 5.1295 0.5416 3.3763 42 1 -0.0222 0.8360 -2.6682 43 1 1.2149 1.6789 -1.7051 44 1 1.3744 1.5882 -3.4756 45 1 3.1955 -1.4257 -3.4071 46 1 2.4860 -0.1542 -4.4308 47 1 3.2844 -1.8866 -5.5858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745078245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:12 Heat of formation + Delta-G solvation = -113.253097 kcal Electronic energy + Delta-G solvation = -27202.517468 eV Core-core repulsion = 23385.719424 eV Total energy + Delta-G solvation = -3816.798043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.06395 -39.49234 -38.50615 -36.38319 -35.08047 -33.81427 -33.16388 -32.03565 -31.15450 -27.46760 -27.23453 -26.20092 -25.03113 -23.95940 -23.27762 -22.56926 -21.00062 -19.96435 -19.05593 -18.03975 -16.97390 -16.89700 -16.22699 -16.14350 -15.72592 -15.26352 -15.00323 -14.84567 -14.68794 -14.13541 -13.80009 -13.71447 -13.51873 -13.35551 -13.13445 -12.84512 -12.55546 -12.51125 -12.28675 -12.15291 -11.99412 -11.80194 -11.68709 -11.42938 -11.31609 -11.27083 -11.05918 -10.97268 -10.78771 -10.69841 -10.58691 -10.20667 -10.11441 -9.18942 -9.03162 -8.68637 -8.41883 -7.73808 -6.42187 -4.14423 2.07550 2.31190 3.14791 3.41403 3.45710 3.52588 3.63064 3.77822 4.39032 4.42580 4.51235 4.56487 4.71069 4.74887 4.78385 4.89347 4.95936 5.01880 5.14187 5.16753 5.23101 5.32254 5.33242 5.40414 5.43784 5.55813 5.60016 5.61723 5.65548 5.74526 5.77175 5.78061 5.80310 5.97202 6.00430 6.15522 6.36617 6.57164 6.69438 6.71673 7.03741 7.26638 7.71513 7.97816 8.11636 8.37485 8.71860 8.85003 9.55120 10.95401 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.002945 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.855483 B = 9506.484571 C = 9850.985626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.103 0.897 4 O -0.325 6.325 5 C 0.464 3.536 6 O -0.492 6.492 7 C 0.097 3.903 8 H 0.078 0.922 9 C -0.109 4.109 10 C -0.119 4.119 11 C -0.120 4.120 12 C 0.057 3.943 13 N -0.524 5.524 14 C 0.010 3.990 15 C 0.509 3.491 16 O -0.520 6.520 17 N -0.592 5.592 18 C 0.079 3.921 19 C 0.237 3.763 20 C -0.608 4.608 21 H 0.052 0.948 22 C 0.020 3.980 23 N -0.908 5.908 24 Si 1.072 2.928 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.288 1.288 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.025 0.975 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 7.397 22.543 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.014 3.986 3 H 0.121 0.879 4 O -0.240 6.240 5 C 0.306 3.694 6 O -0.379 6.379 7 C -0.012 4.012 8 H 0.096 0.904 9 C -0.146 4.146 10 C -0.157 4.157 11 C -0.158 4.158 12 C -0.070 4.070 13 N -0.250 5.250 14 C -0.138 4.138 15 C 0.293 3.707 16 O -0.395 6.395 17 N -0.326 5.326 18 C -0.065 4.065 19 C 0.118 3.882 20 C -0.646 4.646 21 H 0.071 0.929 22 C -0.184 4.184 23 N -0.544 5.544 24 Si 0.900 3.100 25 H -0.206 1.206 26 H -0.213 1.213 27 H -0.214 1.214 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.682 6.393 21.475 22.470 hybrid contribution 0.887 0.882 0.827 1.500 sum -0.795 7.276 22.302 23.472 Atomic orbital electron populations 1.22266 0.92082 1.04342 1.04000 1.22592 0.96066 0.97202 0.82723 0.87888 1.86629 1.76422 1.41561 1.19416 1.23511 0.74790 0.85986 0.85143 1.90608 1.47003 1.16336 1.83931 1.21212 0.98901 0.93090 0.88042 0.90434 1.21586 0.96124 1.00079 0.96854 1.21580 1.00871 0.97809 0.95432 1.21640 0.98165 0.98150 0.97820 1.22159 0.96108 0.98143 0.90617 1.61697 1.33743 1.24099 1.05443 1.22638 0.92971 0.97882 1.00323 1.19787 0.81323 0.85743 0.83804 1.90703 1.40205 1.22734 1.85864 1.47861 1.54325 1.23857 1.06522 1.21838 0.96789 0.85987 1.01877 1.19420 0.96228 0.92241 0.80357 1.22227 1.03234 1.24674 1.14494 0.92945 1.25828 1.00270 0.98609 0.93708 1.70811 1.06306 1.36322 1.40991 0.83501 0.74372 0.75832 0.76332 1.20627 1.21336 1.21412 0.91239 0.89240 0.90751 0.90248 0.89917 0.90875 0.91627 0.90771 0.91110 0.90005 0.94459 0.89661 0.90766 0.95555 0.92413 0.92312 0.90990 0.94734 0.95686 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.27 37.16 0.34 -2.06 16 2 C 0.07 1.23 2.16 -27.88 -0.06 1.17 16 3 H 0.10 1.60 6.14 -51.93 -0.32 1.29 16 4 O -0.33 -5.56 9.42 -45.91 -0.43 -5.99 16 5 C 0.46 6.86 6.37 36.01 0.23 7.09 16 6 O -0.49 -7.86 13.74 -18.74 -0.26 -8.11 16 7 C 0.10 1.15 2.35 -68.88 -0.16 0.99 16 8 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 9 C -0.11 -1.06 5.36 -26.65 -0.14 -1.20 16 10 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 11 C -0.12 -0.84 6.09 -26.65 -0.16 -1.00 16 12 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 13 N -0.52 -5.72 4.51 -236.33 -1.07 -6.79 16 14 C 0.01 0.10 9.10 60.06 0.55 0.65 16 15 C 0.51 11.05 7.10 -10.98 -0.08 10.97 16 16 O -0.52 -13.65 16.09 -14.05 -0.23 -13.88 16 17 N -0.59 -12.68 2.86 -182.95 -0.52 -13.21 16 18 C 0.08 1.24 8.96 59.85 0.54 1.78 16 19 C 0.24 6.16 4.52 -5.19 -0.02 6.13 16 20 C -0.61 -17.36 9.39 -34.44 -0.32 -17.69 16 21 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 22 C 0.02 0.58 5.46 -17.82 -0.10 0.49 16 23 N -0.91 -27.66 13.65 55.43 0.76 -26.90 16 24 Si 1.07 25.50 29.90 -169.99 -5.08 20.42 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.16 5.12 -51.93 -0.27 0.90 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 1.11 5.63 -51.93 -0.29 0.82 16 40 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.06 0.86 7.02 -51.93 -0.36 0.49 16 43 H 0.06 0.75 6.07 -51.92 -0.32 0.43 16 44 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 45 H 0.03 1.00 7.29 -51.93 -0.38 0.62 16 46 H 0.03 0.64 7.76 -51.93 -0.40 0.24 16 47 H 0.27 8.07 7.22 -40.82 -0.29 7.78 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -35.14 372.79 -8.53 -43.66 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.74 Total: -1.53 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 0.43 Total: 6.71 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.83 Total: -46.90 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.92 Total: -27.99 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.14 -8.53 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745078245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.590 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds