Wall clock time and date at job start Fri Apr 10 2020 18:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47325 * 2 1 4 4 O 1.45194 * 109.47099 * 240.00345 * 2 1 3 5 5 C 1.34229 * 117.00432 * 89.99968 * 4 2 1 6 6 O 1.20828 * 119.99882 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00260 * 180.02562 * 5 4 2 8 8 H 1.08994 * 109.46263 * 319.99451 * 7 5 4 9 9 C 1.53039 * 109.46573 * 79.97766 * 7 5 4 10 10 C 1.53116 * 109.27906 * 179.19469 * 9 7 5 11 11 C 1.53115 * 109.16141 * 302.34723 * 10 9 7 12 12 C 1.53043 * 109.28140 * 57.65285 * 11 10 9 13 13 N 1.46847 * 109.51357 * 300.81683 * 12 11 10 14 14 C 1.46900 * 110.99251 * 185.84555 * 13 12 11 15 15 C 1.50704 * 109.47145 * 120.00290 * 2 1 3 16 16 O 1.21281 * 119.99620 * 105.80204 * 15 2 1 17 17 N 1.34770 * 119.99916 * 285.80749 * 15 2 1 18 18 C 1.46506 * 120.00222 * 4.45105 * 17 15 2 19 19 C 1.46498 * 119.99836 * 184.17639 * 17 15 2 20 20 C 1.50700 * 109.47272 * 270.26961 * 19 17 15 21 21 H 1.07997 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00040 * 179.97438 * 20 19 17 23 23 N 1.31509 * 119.99991 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99695 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47329 * 60.00508 * 24 22 20 26 26 H 1.48498 * 109.46963 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47686 * 300.00329 * 24 22 20 28 28 H 1.08999 * 109.46758 * 292.33303 * 1 2 3 29 29 H 1.09002 * 109.46905 * 52.32475 * 1 2 3 30 30 H 1.08997 * 109.47305 * 172.32908 * 1 2 3 31 31 H 1.08994 * 109.50121 * 299.13548 * 9 7 5 32 32 H 1.08998 * 109.49918 * 59.21645 * 9 7 5 33 33 H 1.09004 * 109.52234 * 62.24735 * 10 9 7 34 34 H 1.08994 * 109.52231 * 182.44307 * 10 9 7 35 35 H 1.09006 * 109.50670 * 177.59609 * 11 10 9 36 36 H 1.09006 * 109.50451 * 297.71117 * 11 10 9 37 37 H 1.09004 * 109.46133 * 60.83791 * 12 11 10 38 38 H 1.09000 * 109.46570 * 180.81513 * 12 11 10 39 39 H 1.09001 * 109.47307 * 295.80185 * 14 13 12 40 40 H 1.09000 * 109.46557 * 55.79709 * 14 13 12 41 41 H 1.08989 * 109.47297 * 175.79588 * 14 13 12 42 42 H 1.09000 * 109.46561 * 268.28769 * 18 17 15 43 43 H 1.08995 * 109.47219 * 28.28120 * 18 17 15 44 44 H 1.08998 * 109.47394 * 148.28634 * 18 17 15 45 45 H 1.08994 * 109.47124 * 30.27654 * 19 17 15 46 46 H 1.09002 * 109.47107 * 150.27183 * 19 17 15 47 47 H 0.97004 * 119.99763 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1855 5 6 2.2171 0.0641 -2.2811 6 8 1.9982 1.2520 -2.2503 7 6 2.7182 -0.5771 -3.5495 8 1 3.4755 -1.3220 -3.3053 9 6 1.5523 -1.2538 -4.2740 10 6 2.0623 -1.8864 -5.5717 11 6 2.7125 -0.8034 -6.4371 12 6 3.8448 -0.1398 -5.6500 13 7 3.3055 0.4508 -4.4184 14 6 4.3376 1.2157 -3.7057 15 6 2.0324 -0.7105 1.2305 16 8 2.5042 -1.8239 1.1376 17 7 1.9572 -0.1086 2.4340 18 6 1.2995 1.1942 2.5617 19 6 2.5280 -0.7600 3.6155 20 6 1.4833 -1.6331 4.2617 21 1 0.4934 -1.6967 3.8347 22 6 1.7917 -2.3514 5.3975 23 7 2.9973 -2.2742 5.9172 24 14 0.4970 -3.4341 6.1979 25 1 0.0490 -4.4678 5.2304 26 1 1.0755 -4.0943 7.3957 27 1 -0.6630 -2.6007 6.6044 28 1 -0.3633 0.3905 0.9506 29 1 -0.3633 0.6281 -0.8134 30 1 -0.3634 -1.0184 -0.1372 31 1 1.1265 -2.0272 -3.6349 32 1 0.7882 -0.5118 -4.5059 33 1 2.7980 -2.6558 -5.3373 34 1 1.2273 -2.3320 -6.1123 35 1 3.1156 -1.2552 -7.3436 36 1 1.9669 -0.0543 -6.7037 37 1 4.5968 -0.8869 -5.3957 38 1 4.3005 0.6417 -6.2581 39 1 5.1287 0.5411 -3.3785 40 1 4.7558 1.9699 -4.3722 41 1 3.8939 1.7035 -2.8379 42 1 2.0382 1.9871 2.4445 43 1 0.5354 1.2927 1.7906 44 1 0.8356 1.2723 3.5449 45 1 3.3793 -1.3719 3.3175 46 1 2.8569 -0.0011 4.3255 47 1 3.2141 -2.7793 6.7165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745078246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:15 Heat of formation + Delta-G solvation = -107.555204 kcal Electronic energy + Delta-G solvation = -27150.005638 eV Core-core repulsion = 23333.454674 eV Total energy + Delta-G solvation = -3816.550964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.02029 -39.41556 -38.43860 -36.33113 -34.90595 -33.79037 -32.90723 -32.01603 -31.17187 -27.74355 -27.22450 -26.18703 -25.02862 -24.05555 -23.26445 -22.44302 -20.90328 -19.93345 -18.85790 -17.97572 -16.82665 -16.55411 -16.18013 -16.05547 -15.70581 -15.25089 -15.03368 -14.72594 -14.58239 -14.40661 -13.96233 -13.73382 -13.45977 -13.33424 -13.06315 -12.75268 -12.55396 -12.40096 -12.12209 -12.08244 -11.97326 -11.75784 -11.57431 -11.34849 -11.24938 -11.20704 -11.04185 -10.89298 -10.76669 -10.67681 -10.54990 -10.19135 -10.15690 -9.67858 -8.91114 -8.66108 -8.45512 -7.73559 -6.06549 -4.11498 2.11304 2.35746 3.23344 3.31219 3.35573 3.39450 3.56429 3.87346 4.41129 4.42280 4.46984 4.58413 4.74839 4.77774 4.85783 4.92503 5.02177 5.10583 5.16725 5.19386 5.25529 5.28042 5.34282 5.42395 5.43196 5.57854 5.62537 5.65854 5.72631 5.76595 5.79560 5.83320 5.87147 6.02238 6.06365 6.25932 6.41345 6.59854 6.72410 6.97492 7.36742 7.45150 7.75785 7.89231 8.18999 8.28336 8.83524 8.98092 9.53401 11.01671 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.002898 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.498167 B = 9658.336136 C = 9934.068430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.102 0.898 4 O -0.326 6.326 5 C 0.464 3.536 6 O -0.492 6.492 7 C 0.097 3.903 8 H 0.078 0.922 9 C -0.108 4.108 10 C -0.119 4.119 11 C -0.120 4.120 12 C 0.057 3.943 13 N -0.524 5.524 14 C 0.009 3.991 15 C 0.507 3.493 16 O -0.518 6.518 17 N -0.596 5.596 18 C 0.067 3.933 19 C 0.247 3.753 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.036 0.964 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 6.728 -22.321 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.120 0.880 4 O -0.241 6.241 5 C 0.305 3.695 6 O -0.379 6.379 7 C -0.013 4.013 8 H 0.096 0.904 9 C -0.146 4.146 10 C -0.157 4.157 11 C -0.158 4.158 12 C -0.070 4.070 13 N -0.250 5.250 14 C -0.138 4.138 15 C 0.291 3.709 16 O -0.393 6.393 17 N -0.330 5.330 18 C -0.077 4.077 19 C 0.129 3.871 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.571 6.741 -22.263 23.314 hybrid contribution -0.037 -0.893 0.924 1.285 sum -1.608 5.849 -21.339 22.184 Atomic orbital electron populations 1.22296 0.92285 1.04155 1.04002 1.22645 0.95984 0.97336 0.82752 0.87989 1.86630 1.76409 1.41564 1.19453 1.23504 0.74823 0.85999 0.85165 1.90612 1.46967 1.16330 1.83942 1.21212 0.98889 0.93091 0.88074 0.90447 1.21582 0.96136 1.00075 0.96839 1.21580 1.00849 0.97814 0.95447 1.21645 0.98164 0.98155 0.97818 1.22160 0.96101 0.98136 0.90644 1.61710 1.33741 1.24097 1.05426 1.22641 0.92957 0.97882 1.00345 1.19785 0.80671 0.86600 0.83812 1.90706 1.44747 1.18303 1.85548 1.48085 1.56594 1.19833 1.08484 1.21977 0.97102 0.85039 1.03538 1.19339 0.94716 0.92881 0.80179 1.21377 0.98123 1.27019 1.10122 0.92402 1.24936 0.95627 0.96614 0.96905 1.69919 1.19326 1.42042 1.22111 0.86539 0.81411 0.80726 0.78636 1.20117 1.21160 1.20227 0.89106 0.91157 0.90626 0.89918 0.90257 0.91632 0.90900 0.91141 0.90779 0.94462 0.90024 0.95546 0.90791 0.89606 0.93392 0.91567 0.90247 0.93862 0.94608 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.15 37.16 0.34 -2.04 16 2 C 0.07 1.20 2.17 -27.88 -0.06 1.14 16 3 H 0.10 1.60 6.70 -51.93 -0.35 1.25 16 4 O -0.33 -5.53 9.46 -45.78 -0.43 -5.96 16 5 C 0.46 6.83 6.37 36.01 0.23 7.06 16 6 O -0.49 -7.85 13.74 -18.75 -0.26 -8.11 16 7 C 0.10 1.14 2.35 -68.87 -0.16 0.98 16 8 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 9 C -0.11 -1.05 5.36 -26.65 -0.14 -1.19 16 10 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 11 C -0.12 -0.84 6.09 -26.65 -0.16 -1.00 16 12 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 13 N -0.52 -5.72 4.51 -236.32 -1.07 -6.78 16 14 C 0.01 0.10 9.10 60.06 0.55 0.65 16 15 C 0.51 10.96 7.00 -10.99 -0.08 10.89 16 16 O -0.52 -13.55 16.19 -13.67 -0.22 -13.77 16 17 N -0.60 -12.76 2.86 -182.96 -0.52 -13.28 16 18 C 0.07 1.06 9.86 59.85 0.59 1.65 16 19 C 0.25 6.48 5.13 -5.19 -0.03 6.45 16 20 C -0.53 -14.92 9.38 -34.44 -0.32 -15.25 16 21 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 24 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H 0.09 1.19 5.52 -51.93 -0.29 0.90 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.09 1.12 5.63 -51.94 -0.29 0.82 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.87 4.21 -51.93 -0.22 0.65 16 44 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 45 H 0.04 1.28 7.49 -51.93 -0.39 0.89 16 46 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -34.20 375.49 -8.48 -42.68 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.83 Total: -1.79 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 0.47 Total: 10.39 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.85 Total: -45.88 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.91 Total: -27.84 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.20 -8.48 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745078246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.874 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds