Wall clock time and date at job start Fri Apr 10 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47325 * 2 1 4 4 O 1.45194 * 109.47099 * 240.00345 * 2 1 3 5 5 C 1.34229 * 117.00432 * 89.99968 * 4 2 1 6 6 O 1.20828 * 119.99882 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00260 * 180.02562 * 5 4 2 8 8 H 1.08994 * 109.46263 * 319.99451 * 7 5 4 9 9 C 1.53039 * 109.46573 * 79.97766 * 7 5 4 10 10 C 1.53116 * 109.27906 * 179.19469 * 9 7 5 11 11 C 1.53115 * 109.16141 * 302.34723 * 10 9 7 12 12 C 1.53043 * 109.28140 * 57.65285 * 11 10 9 13 13 N 1.46847 * 109.51357 * 300.81683 * 12 11 10 14 14 C 1.46900 * 110.99251 * 185.84555 * 13 12 11 15 15 C 1.50704 * 109.47145 * 120.00290 * 2 1 3 16 16 O 1.21281 * 119.99620 * 105.80204 * 15 2 1 17 17 N 1.34770 * 119.99916 * 285.80749 * 15 2 1 18 18 C 1.46506 * 120.00222 * 4.45105 * 17 15 2 19 19 C 1.46498 * 119.99836 * 184.17639 * 17 15 2 20 20 C 1.50700 * 109.47272 * 270.26961 * 19 17 15 21 21 H 1.07997 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00040 * 179.97438 * 20 19 17 23 23 N 1.31509 * 119.99991 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99695 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47329 * 60.00508 * 24 22 20 26 26 H 1.48498 * 109.46963 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47686 * 300.00329 * 24 22 20 28 28 H 1.08999 * 109.46758 * 292.33303 * 1 2 3 29 29 H 1.09002 * 109.46905 * 52.32475 * 1 2 3 30 30 H 1.08997 * 109.47305 * 172.32908 * 1 2 3 31 31 H 1.08994 * 109.50121 * 299.13548 * 9 7 5 32 32 H 1.08998 * 109.49918 * 59.21645 * 9 7 5 33 33 H 1.09004 * 109.52234 * 62.24735 * 10 9 7 34 34 H 1.08994 * 109.52231 * 182.44307 * 10 9 7 35 35 H 1.09006 * 109.50670 * 177.59609 * 11 10 9 36 36 H 1.09006 * 109.50451 * 297.71117 * 11 10 9 37 37 H 1.09004 * 109.46133 * 60.83791 * 12 11 10 38 38 H 1.09000 * 109.46570 * 180.81513 * 12 11 10 39 39 H 1.09001 * 109.47307 * 295.80185 * 14 13 12 40 40 H 1.09000 * 109.46557 * 55.79709 * 14 13 12 41 41 H 1.08989 * 109.47297 * 175.79588 * 14 13 12 42 42 H 1.09000 * 109.46561 * 268.28769 * 18 17 15 43 43 H 1.08995 * 109.47219 * 28.28120 * 18 17 15 44 44 H 1.08998 * 109.47394 * 148.28634 * 18 17 15 45 45 H 1.08994 * 109.47124 * 30.27654 * 19 17 15 46 46 H 1.09002 * 109.47107 * 150.27183 * 19 17 15 47 47 H 0.97004 * 119.99763 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1855 5 6 2.2171 0.0641 -2.2811 6 8 1.9982 1.2520 -2.2503 7 6 2.7182 -0.5771 -3.5495 8 1 3.4755 -1.3220 -3.3053 9 6 1.5523 -1.2538 -4.2740 10 6 2.0623 -1.8864 -5.5717 11 6 2.7125 -0.8034 -6.4371 12 6 3.8448 -0.1398 -5.6500 13 7 3.3055 0.4508 -4.4184 14 6 4.3376 1.2157 -3.7057 15 6 2.0324 -0.7105 1.2305 16 8 2.5042 -1.8239 1.1376 17 7 1.9572 -0.1086 2.4340 18 6 1.2995 1.1942 2.5617 19 6 2.5280 -0.7600 3.6155 20 6 1.4833 -1.6331 4.2617 21 1 0.4934 -1.6967 3.8347 22 6 1.7917 -2.3514 5.3975 23 7 2.9973 -2.2742 5.9172 24 14 0.4970 -3.4341 6.1979 25 1 0.0490 -4.4678 5.2304 26 1 1.0755 -4.0943 7.3957 27 1 -0.6630 -2.6007 6.6044 28 1 -0.3633 0.3905 0.9506 29 1 -0.3633 0.6281 -0.8134 30 1 -0.3634 -1.0184 -0.1372 31 1 1.1265 -2.0272 -3.6349 32 1 0.7882 -0.5118 -4.5059 33 1 2.7980 -2.6558 -5.3373 34 1 1.2273 -2.3320 -6.1123 35 1 3.1156 -1.2552 -7.3436 36 1 1.9669 -0.0543 -6.7037 37 1 4.5968 -0.8869 -5.3957 38 1 4.3005 0.6417 -6.2581 39 1 5.1287 0.5411 -3.3785 40 1 4.7558 1.9699 -4.3722 41 1 3.8939 1.7035 -2.8379 42 1 2.0382 1.9871 2.4445 43 1 0.5354 1.2927 1.7906 44 1 0.8356 1.2723 3.5449 45 1 3.3793 -1.3719 3.3175 46 1 2.8569 -0.0011 4.3255 47 1 3.2141 -2.7793 6.7165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745078246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:14 Heat of formation + Delta-G solvation = -129.511322 kcal Electronic energy + Delta-G solvation = -27150.957727 eV Core-core repulsion = 23333.454674 eV Total energy + Delta-G solvation = -3817.503053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.20447 -40.83624 -39.55688 -37.58964 -36.71886 -34.90773 -34.51608 -33.30935 -32.16346 -29.66086 -28.02999 -27.68525 -26.20825 -25.53037 -24.23582 -23.78697 -21.98322 -20.75147 -20.44701 -19.15166 -18.70840 -18.20267 -17.48887 -17.35397 -17.02078 -16.48594 -16.26375 -16.00148 -15.98250 -15.40545 -15.10970 -14.89503 -14.46985 -14.41318 -14.25493 -14.06482 -13.83031 -13.70334 -13.59997 -13.35847 -13.25790 -13.03655 -12.92124 -12.76163 -12.60027 -12.45820 -12.39461 -12.19465 -12.03668 -11.91460 -11.74244 -11.65404 -11.39308 -11.17814 -10.65835 -10.63829 -9.55245 -9.47914 -8.24156 -6.38825 0.94947 1.16237 1.36955 1.41507 1.48250 1.57895 2.26248 2.40942 2.78483 3.06007 3.34733 3.43492 3.67838 3.73361 3.80592 3.89407 3.96770 4.10109 4.17876 4.22506 4.38350 4.44237 4.52240 4.55391 4.57552 4.63229 4.71620 4.76711 4.83510 4.90157 4.93323 4.95930 5.01540 5.09806 5.15746 5.15791 5.20041 5.26903 5.43495 5.49727 5.75225 5.76857 5.97733 6.01818 6.50252 6.62961 6.69401 7.17535 7.34250 8.83335 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.002898 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.498167 B = 9658.336136 C = 9934.068430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 H 0.118 0.882 4 O -0.345 6.345 5 C 0.463 3.537 6 O -0.504 6.504 7 C 0.097 3.903 8 H 0.075 0.925 9 C -0.106 4.106 10 C -0.116 4.116 11 C -0.116 4.116 12 C 0.053 3.947 13 N -0.532 5.532 14 C 0.010 3.990 15 C 0.499 3.501 16 O -0.576 6.576 17 N -0.600 5.600 18 C 0.060 3.940 19 C 0.260 3.740 20 C -0.544 4.544 21 H 0.056 0.944 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.969 3.031 25 H -0.278 1.278 26 H -0.279 1.279 27 H -0.259 1.259 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.095 0.905 39 H 0.026 0.974 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.078 0.922 45 H -0.002 1.002 46 H 0.032 0.968 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 7.373 -23.963 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.135 0.865 4 O -0.260 6.260 5 C 0.306 3.694 6 O -0.391 6.391 7 C -0.012 4.012 8 H 0.093 0.907 9 C -0.144 4.144 10 C -0.154 4.154 11 C -0.154 4.154 12 C -0.073 4.073 13 N -0.259 5.259 14 C -0.137 4.137 15 C 0.286 3.714 16 O -0.456 6.456 17 N -0.332 5.332 18 C -0.081 4.081 19 C 0.139 3.861 20 C -0.583 4.583 21 H 0.074 0.926 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.203 1.203 26 H -0.204 1.204 27 H -0.183 1.183 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.044 0.956 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.016 0.984 46 H 0.050 0.950 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.196 7.445 -23.924 25.258 hybrid contribution 0.534 -1.036 1.397 1.819 sum -2.662 6.409 -22.527 23.571 Atomic orbital electron populations 1.22298 0.89733 1.04409 1.05579 1.22523 0.97636 0.96756 0.80779 0.86453 1.86643 1.76873 1.42520 1.19992 1.24123 0.74204 0.85881 0.85189 1.90594 1.47657 1.16820 1.84078 1.21344 0.99626 0.93158 0.87092 0.90729 1.21611 0.95232 0.99786 0.97770 1.21598 1.01516 0.97920 0.94356 1.21648 0.97623 0.97841 0.98249 1.22314 0.96709 0.98737 0.89565 1.61778 1.34067 1.24124 1.05928 1.22605 0.92817 0.98292 1.00028 1.20656 0.79509 0.86120 0.85123 1.90665 1.47310 1.21048 1.86568 1.48076 1.56408 1.21434 1.07307 1.22302 0.98322 0.82694 1.04780 1.18847 0.93277 0.92308 0.81623 1.21653 0.98341 1.27730 1.10538 0.92559 1.25869 0.97848 0.97913 0.97503 1.70041 1.21255 1.42929 1.22606 0.85451 0.79031 0.78713 0.77533 1.20315 1.20375 1.18289 0.87926 0.88760 0.91357 0.90288 0.90567 0.91416 0.89313 0.88936 0.91094 0.94180 0.88622 0.95564 0.88907 0.92037 0.90931 0.88356 0.90271 0.98428 0.95048 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 9.15 71.98 0.66 -3.61 16 2 C 0.08 2.69 2.17 29.85 0.06 2.76 16 3 H 0.12 3.51 6.70 -2.39 -0.02 3.49 16 4 O -0.34 -11.77 9.46 -45.17 -0.43 -12.19 16 5 C 0.46 13.50 6.37 71.24 0.45 13.95 16 6 O -0.50 -15.69 13.74 21.96 0.30 -15.39 16 7 C 0.10 2.24 2.35 44.19 0.10 2.34 16 8 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 9 C -0.11 -1.93 5.36 30.65 0.16 -1.77 16 10 C -0.12 -1.48 6.00 30.67 0.18 -1.30 16 11 C -0.12 -1.31 6.09 30.65 0.19 -1.12 16 12 C 0.05 0.76 5.46 86.33 0.47 1.23 16 13 N -0.53 -10.97 4.51 -901.59 -4.07 -15.03 16 14 C 0.01 0.22 9.10 127.69 1.16 1.38 16 15 C 0.50 22.05 7.00 87.66 0.61 22.66 16 16 O -0.58 -31.64 16.19 15.35 0.25 -31.39 16 17 N -0.60 -26.00 2.86 -851.14 -2.43 -28.43 16 18 C 0.06 1.82 9.86 127.77 1.26 3.08 16 19 C 0.26 14.16 5.13 85.63 0.44 14.60 16 20 C -0.54 -31.38 9.38 25.60 0.24 -31.14 16 21 H 0.06 3.19 7.81 -2.91 -0.02 3.16 16 22 C 0.01 0.45 5.46 84.66 0.46 0.91 16 23 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 24 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 28 H 0.10 2.41 5.52 -2.39 -0.01 2.39 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 39 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 41 H 0.06 1.59 5.63 -2.39 -0.01 1.58 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 2.32 4.21 -2.39 -0.01 2.31 16 44 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 45 H 0.00 -0.15 7.49 -2.39 -0.02 -0.17 16 46 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 47 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -76.82 375.49 3.35 -73.47 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.95 Total: 14.16 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 6.46 Total: 23.96 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -6.21 Total: -99.44 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: 0.12 Total: -58.97 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -76.82 3.35 -73.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745078246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.042 kcal (2) G-P(sol) polarization free energy of solvation -76.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds