Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.45198 * 109.46884 * 239.99662 * 2 1 3 5 5 C 1.34232 * 116.99973 * 90.00459 * 4 2 1 6 6 O 1.20828 * 120.00187 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00321 * 180.02562 * 5 4 2 8 8 H 1.08997 * 109.46501 * 39.97163 * 7 5 4 9 9 C 1.53042 * 109.46244 * 279.99774 * 7 5 4 10 10 C 1.53115 * 109.28172 * 180.80326 * 9 7 5 11 11 C 1.53119 * 109.16107 * 57.65108 * 10 9 7 12 12 C 1.53039 * 109.28115 * 302.35142 * 11 10 9 13 13 N 1.46841 * 109.46687 * 159.94556 * 7 5 4 14 14 C 1.46904 * 110.99912 * 305.85372 * 13 7 5 15 15 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 16 16 O 1.21277 * 119.99833 * 119.99582 * 15 2 1 17 17 N 1.34773 * 120.00068 * 299.99925 * 15 2 1 18 18 C 1.46501 * 120.00203 * 359.97438 * 17 15 2 19 19 C 1.46500 * 119.99996 * 179.97438 * 17 15 2 20 20 C 1.50698 * 109.47197 * 89.99987 * 19 17 15 21 21 H 1.08004 * 119.99807 * 359.97438 * 20 19 17 22 22 C 1.37873 * 120.00370 * 180.02562 * 20 19 17 23 23 N 1.31517 * 120.00620 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00014 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46795 * 90.00277 * 24 22 20 26 26 H 1.48492 * 109.47745 * 210.00417 * 24 22 20 27 27 H 1.48502 * 109.46932 * 330.00757 * 24 22 20 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.09003 * 109.49852 * 300.74687 * 9 7 5 32 32 H 1.09006 * 109.50146 * 60.82066 * 9 7 5 33 33 H 1.08996 * 109.52323 * 177.56022 * 10 9 7 34 34 H 1.09006 * 109.52408 * 297.68601 * 10 9 7 35 35 H 1.09009 * 109.49995 * 62.28595 * 11 10 9 36 36 H 1.09000 * 109.50577 * 182.36601 * 11 10 9 37 37 H 1.08998 * 109.46300 * 179.19543 * 12 11 10 38 38 H 1.09001 * 109.45800 * 299.17004 * 12 11 10 39 39 H 1.09004 * 109.47061 * 59.99934 * 14 13 7 40 40 H 1.08997 * 109.47403 * 179.97438 * 14 13 7 41 41 H 1.09002 * 109.47324 * 299.99797 * 14 13 7 42 42 H 1.09002 * 109.47088 * 90.00108 * 18 17 15 43 43 H 1.08992 * 109.47451 * 209.99999 * 18 17 15 44 44 H 1.09007 * 109.46824 * 330.00395 * 18 17 15 45 45 H 1.09004 * 109.47343 * 209.99881 * 19 17 15 46 46 H 1.08993 * 109.47349 * 329.99860 * 19 17 15 47 47 H 0.96994 * 120.00474 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2171 0.0639 -2.2811 6 8 1.9974 1.2517 -2.2507 7 6 2.7182 -0.5773 -3.5495 8 1 2.2299 -1.5422 -3.6861 9 6 4.2320 -0.7809 -3.4544 10 6 4.7395 -1.4141 -4.7528 11 6 4.3642 -0.5122 -5.9320 12 6 2.8465 -0.3164 -5.9552 13 7 2.4109 0.2924 -4.6920 14 6 0.9799 0.6223 -4.7326 15 6 2.0323 -0.7104 1.2305 16 8 2.7295 -1.6965 1.1192 17 7 1.7068 -0.2499 2.4545 18 6 0.8650 0.9415 2.5890 19 6 2.1946 -0.9409 3.6507 20 6 3.5223 -0.3580 4.0611 21 1 3.9593 0.4464 3.4880 22 6 4.1798 -0.8522 5.1676 23 7 5.3383 -0.3432 5.5261 24 14 3.4245 -2.2440 6.1586 25 1 3.8837 -3.5464 5.6124 26 1 3.8453 -2.1264 7.5778 27 1 1.9440 -2.1657 6.0731 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.7199 0.1822 -3.3041 32 1 4.4587 -1.4386 -2.6152 33 1 5.8233 -1.5210 -4.7066 34 1 4.2819 -2.3948 -4.8831 35 1 4.8542 0.4551 -5.8207 36 1 4.6859 -0.9782 -6.8634 37 1 2.5773 0.3369 -6.7852 38 1 2.3576 -1.2825 -6.0802 39 1 0.7000 1.1392 -3.8146 40 1 0.7799 1.2677 -5.5879 41 1 0.3981 -0.2948 -4.8251 42 1 -0.1831 0.6440 2.6222 43 1 1.1228 1.4667 3.5086 44 1 1.0289 1.6003 1.7361 45 1 1.4766 -0.8153 4.4612 46 1 2.3153 -2.0021 3.4335 47 1 5.8006 -0.6907 6.3048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745078247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = -102.874157 kcal Electronic energy + Delta-G solvation = -27241.447056 eV Core-core repulsion = 23425.099077 eV Total energy + Delta-G solvation = -3816.347979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02716 -39.49152 -38.48316 -36.34135 -35.07959 -33.76732 -32.90784 -32.01873 -31.19517 -28.29828 -27.21239 -26.39738 -25.08948 -23.97104 -23.22994 -22.19685 -20.84954 -19.94044 -18.90963 -17.96222 -16.97860 -16.90710 -16.20109 -15.99733 -15.75522 -15.34539 -15.13041 -14.79193 -14.65273 -14.15889 -14.00501 -13.58717 -13.45438 -13.33002 -13.15638 -12.98563 -12.51198 -12.44023 -12.35589 -12.22399 -11.98954 -11.79554 -11.65108 -11.56898 -11.30385 -11.23447 -10.98764 -10.96433 -10.70271 -10.66006 -10.54570 -10.19412 -10.14364 -9.57330 -9.03611 -8.65986 -8.61400 -7.81539 -6.10837 -4.10530 2.13037 2.32933 3.16392 3.27628 3.33453 3.35287 3.55197 3.77671 4.37274 4.45105 4.48674 4.63630 4.70765 4.78434 4.80504 4.92088 4.97111 5.05435 5.14047 5.19239 5.22147 5.25664 5.37384 5.43594 5.44317 5.57351 5.59299 5.62273 5.70333 5.74013 5.76942 5.84376 5.91875 5.92924 6.09693 6.14919 6.39086 6.60483 6.62748 6.72814 6.87453 7.21749 7.56388 7.75536 8.08936 8.42779 8.80380 8.92697 9.48378 11.02450 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.003187 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.664668 B = 8782.709174 C = 9588.044614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 H 0.108 0.892 4 O -0.326 6.326 5 C 0.464 3.536 6 O -0.490 6.490 7 C 0.100 3.900 8 H 0.076 0.924 9 C -0.112 4.112 10 C -0.118 4.118 11 C -0.121 4.121 12 C 0.059 3.941 13 N -0.524 5.524 14 C 0.011 3.989 15 C 0.512 3.488 16 O -0.518 6.518 17 N -0.591 5.591 18 C 0.075 3.925 19 C 0.217 3.783 20 C -0.532 4.532 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.266 1.266 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.024 0.976 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 0.663 -21.295 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 H 0.126 0.874 4 O -0.241 6.241 5 C 0.306 3.694 6 O -0.377 6.377 7 C -0.009 4.009 8 H 0.093 0.907 9 C -0.150 4.150 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.069 4.069 13 N -0.250 5.250 14 C -0.137 4.137 15 C 0.296 3.704 16 O -0.394 6.394 17 N -0.325 5.325 18 C -0.068 4.068 19 C 0.097 3.903 20 C -0.571 4.571 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.268 0.905 -21.079 23.044 hybrid contribution -0.777 -1.136 0.594 1.499 sum -10.044 -0.231 -20.485 22.816 Atomic orbital electron populations 1.22401 0.92447 1.04001 1.04357 1.22563 0.95575 0.97807 0.82790 0.87419 1.86602 1.76507 1.41472 1.19503 1.23504 0.74415 0.86100 0.85415 1.90618 1.47007 1.16245 1.83821 1.21191 0.98540 0.94811 0.86393 0.90658 1.21619 0.91026 1.03008 0.99318 1.21573 1.01566 0.98618 0.93841 1.21653 0.94988 1.00868 0.98354 1.22147 0.96197 0.97716 0.90816 1.61676 1.18214 1.43536 1.01601 1.22632 0.86496 1.00047 1.04534 1.19780 0.81465 0.85342 0.83797 1.90702 1.36700 1.26082 1.85872 1.47720 1.50155 1.28493 1.06108 1.21917 0.93684 0.87832 1.03396 1.19720 0.95496 0.93720 0.81347 1.21321 1.03092 1.20486 1.12189 0.90708 1.24857 0.94621 0.96471 0.97014 1.69895 1.14757 1.42236 1.26514 0.86841 0.80016 0.83244 0.79527 1.19840 1.21019 1.19032 0.91073 0.88817 0.91367 0.90130 0.89544 0.90784 0.91748 0.90702 0.91147 0.90058 0.94582 0.89621 0.90839 0.95779 0.92919 0.90066 0.91934 0.94823 0.94366 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.18 37.16 0.34 -1.84 16 2 C 0.07 1.18 2.18 -27.88 -0.06 1.12 16 3 H 0.11 1.76 6.42 -51.93 -0.33 1.43 16 4 O -0.33 -5.50 9.41 -45.91 -0.43 -5.94 16 5 C 0.46 6.97 6.37 36.00 0.23 7.20 16 6 O -0.49 -8.06 13.74 -18.75 -0.26 -8.31 16 7 C 0.10 1.21 2.35 -68.88 -0.16 1.05 16 8 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 9 C -0.11 -1.27 5.36 -26.65 -0.14 -1.41 16 10 C -0.12 -1.01 6.00 -26.61 -0.16 -1.17 16 11 C -0.12 -0.92 6.09 -26.65 -0.16 -1.09 16 12 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 13 N -0.52 -5.74 4.51 -236.33 -1.07 -6.81 16 14 C 0.01 0.11 9.10 60.07 0.55 0.65 16 15 C 0.51 10.77 7.15 -10.99 -0.08 10.69 16 16 O -0.52 -13.16 16.08 -14.10 -0.23 -13.39 16 17 N -0.59 -12.14 2.86 -182.96 -0.52 -12.67 16 18 C 0.08 1.13 8.80 59.85 0.53 1.65 16 19 C 0.22 5.27 4.23 -5.19 -0.02 5.25 16 20 C -0.53 -15.31 9.94 -34.44 -0.34 -15.65 16 21 H 0.07 2.37 8.06 -52.48 -0.42 1.94 16 22 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 23 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 24 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.02 4.53 -51.93 -0.24 0.78 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.09 1.02 5.63 -51.93 -0.29 0.73 16 40 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.05 0.63 6.95 -51.93 -0.36 0.26 16 43 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 44 H 0.06 0.81 6.01 -51.93 -0.31 0.50 16 45 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 46 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 47 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -35.29 370.17 -8.19 -43.48 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.76 Total: -0.77 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 0.39 Total: 8.94 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.81 Total: -46.33 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.92 Total: -27.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.29 -8.19 -43.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745078247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.394 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds