Wall clock time and date at job start Fri Apr 10 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.45198 * 109.46884 * 239.99662 * 2 1 3 5 5 C 1.34232 * 116.99973 * 90.00459 * 4 2 1 6 6 O 1.20828 * 120.00187 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00321 * 180.02562 * 5 4 2 8 8 H 1.08997 * 109.46501 * 39.97163 * 7 5 4 9 9 C 1.53042 * 109.46244 * 279.99774 * 7 5 4 10 10 C 1.53115 * 109.28172 * 180.80326 * 9 7 5 11 11 C 1.53119 * 109.16107 * 57.65108 * 10 9 7 12 12 C 1.53039 * 109.28115 * 302.35142 * 11 10 9 13 13 N 1.46841 * 109.46687 * 159.94556 * 7 5 4 14 14 C 1.46904 * 110.99912 * 305.85372 * 13 7 5 15 15 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 16 16 O 1.21277 * 119.99833 * 119.99582 * 15 2 1 17 17 N 1.34773 * 120.00068 * 299.99925 * 15 2 1 18 18 C 1.46501 * 120.00203 * 359.97438 * 17 15 2 19 19 C 1.46500 * 119.99996 * 179.97438 * 17 15 2 20 20 C 1.50698 * 109.47197 * 89.99987 * 19 17 15 21 21 H 1.08004 * 119.99807 * 359.97438 * 20 19 17 22 22 C 1.37873 * 120.00370 * 180.02562 * 20 19 17 23 23 N 1.31517 * 120.00620 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00014 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46795 * 90.00277 * 24 22 20 26 26 H 1.48492 * 109.47745 * 210.00417 * 24 22 20 27 27 H 1.48502 * 109.46932 * 330.00757 * 24 22 20 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.09003 * 109.49852 * 300.74687 * 9 7 5 32 32 H 1.09006 * 109.50146 * 60.82066 * 9 7 5 33 33 H 1.08996 * 109.52323 * 177.56022 * 10 9 7 34 34 H 1.09006 * 109.52408 * 297.68601 * 10 9 7 35 35 H 1.09009 * 109.49995 * 62.28595 * 11 10 9 36 36 H 1.09000 * 109.50577 * 182.36601 * 11 10 9 37 37 H 1.08998 * 109.46300 * 179.19543 * 12 11 10 38 38 H 1.09001 * 109.45800 * 299.17004 * 12 11 10 39 39 H 1.09004 * 109.47061 * 59.99934 * 14 13 7 40 40 H 1.08997 * 109.47403 * 179.97438 * 14 13 7 41 41 H 1.09002 * 109.47324 * 299.99797 * 14 13 7 42 42 H 1.09002 * 109.47088 * 90.00108 * 18 17 15 43 43 H 1.08992 * 109.47451 * 209.99999 * 18 17 15 44 44 H 1.09007 * 109.46824 * 330.00395 * 18 17 15 45 45 H 1.09004 * 109.47343 * 209.99881 * 19 17 15 46 46 H 1.08993 * 109.47349 * 329.99860 * 19 17 15 47 47 H 0.96994 * 120.00474 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2171 0.0639 -2.2811 6 8 1.9974 1.2517 -2.2507 7 6 2.7182 -0.5773 -3.5495 8 1 2.2299 -1.5422 -3.6861 9 6 4.2320 -0.7809 -3.4544 10 6 4.7395 -1.4141 -4.7528 11 6 4.3642 -0.5122 -5.9320 12 6 2.8465 -0.3164 -5.9552 13 7 2.4109 0.2924 -4.6920 14 6 0.9799 0.6223 -4.7326 15 6 2.0323 -0.7104 1.2305 16 8 2.7295 -1.6965 1.1192 17 7 1.7068 -0.2499 2.4545 18 6 0.8650 0.9415 2.5890 19 6 2.1946 -0.9409 3.6507 20 6 3.5223 -0.3580 4.0611 21 1 3.9593 0.4464 3.4880 22 6 4.1798 -0.8522 5.1676 23 7 5.3383 -0.3432 5.5261 24 14 3.4245 -2.2440 6.1586 25 1 3.8837 -3.5464 5.6124 26 1 3.8453 -2.1264 7.5778 27 1 1.9440 -2.1657 6.0731 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.7199 0.1822 -3.3041 32 1 4.4587 -1.4386 -2.6152 33 1 5.8233 -1.5210 -4.7066 34 1 4.2819 -2.3948 -4.8831 35 1 4.8542 0.4551 -5.8207 36 1 4.6859 -0.9782 -6.8634 37 1 2.5773 0.3369 -6.7852 38 1 2.3576 -1.2825 -6.0802 39 1 0.7000 1.1392 -3.8146 40 1 0.7799 1.2677 -5.5879 41 1 0.3981 -0.2948 -4.8251 42 1 -0.1831 0.6440 2.6222 43 1 1.1228 1.4667 3.5086 44 1 1.0289 1.6003 1.7361 45 1 1.4766 -0.8153 4.4612 46 1 2.3153 -2.0021 3.4335 47 1 5.8006 -0.6907 6.3048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745078247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:16 Heat of formation + Delta-G solvation = -126.982030 kcal Electronic energy + Delta-G solvation = -27242.492452 eV Core-core repulsion = 23425.099077 eV Total energy + Delta-G solvation = -3817.393375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.22079 -40.88932 -39.57308 -37.60490 -36.79954 -34.90354 -34.53110 -33.37510 -32.20557 -30.13464 -28.00849 -27.78938 -26.20880 -25.35634 -24.10834 -23.69225 -21.99002 -20.78160 -20.46306 -19.22014 -19.08844 -18.25842 -17.53218 -17.28235 -17.04873 -16.56585 -16.33518 -16.10878 -15.65204 -15.40224 -15.16943 -14.97034 -14.59876 -14.45469 -14.20358 -14.06358 -14.05376 -13.77894 -13.66629 -13.48982 -13.20909 -13.01875 -12.85078 -12.75354 -12.58621 -12.48762 -12.37605 -12.08183 -12.02707 -11.90592 -11.76509 -11.68639 -11.41594 -11.18384 -10.84910 -10.70744 -9.52884 -9.43469 -8.35594 -6.42215 0.94406 1.14566 1.33526 1.37831 1.46178 1.53569 2.25055 2.30483 2.79410 2.98618 3.32779 3.41448 3.66297 3.71088 3.81187 3.85725 3.96064 4.09174 4.17732 4.27411 4.42095 4.45891 4.49573 4.54300 4.57814 4.61780 4.68442 4.75378 4.76233 4.83051 4.89032 4.91939 4.97002 4.99570 5.07250 5.12981 5.18245 5.25422 5.40900 5.41642 5.49554 5.78902 6.01219 6.18909 6.45076 6.59394 6.60001 7.11681 7.25543 8.81518 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.003187 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.664668 B = 8782.709174 C = 9588.044614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 H 0.108 0.892 4 O -0.343 6.343 5 C 0.462 3.538 6 O -0.507 6.507 7 C 0.104 3.896 8 H 0.088 0.912 9 C -0.113 4.113 10 C -0.114 4.114 11 C -0.118 4.118 12 C 0.057 3.943 13 N -0.540 5.540 14 C 0.012 3.988 15 C 0.502 3.498 16 O -0.575 6.575 17 N -0.596 5.596 18 C 0.066 3.934 19 C 0.224 3.776 20 C -0.543 4.543 21 H 0.025 0.975 22 C 0.010 3.990 23 N -0.946 5.946 24 Si 0.951 3.049 25 H -0.276 1.276 26 H -0.275 1.275 27 H -0.233 1.233 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.022 0.978 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.594 0.027 -22.508 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 H 0.125 0.875 4 O -0.259 6.259 5 C 0.305 3.695 6 O -0.395 6.395 7 C -0.006 4.006 8 H 0.105 0.895 9 C -0.151 4.151 10 C -0.152 4.152 11 C -0.155 4.155 12 C -0.070 4.070 13 N -0.267 5.267 14 C -0.135 4.135 15 C 0.289 3.711 16 O -0.454 6.454 17 N -0.328 5.328 18 C -0.076 4.076 19 C 0.102 3.898 20 C -0.581 4.581 21 H 0.044 0.956 22 C -0.188 4.188 23 N -0.585 5.585 24 Si 0.773 3.227 25 H -0.202 1.202 26 H -0.200 1.200 27 H -0.155 1.155 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.054 0.946 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.041 0.959 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.942 0.321 -22.313 25.309 hybrid contribution 0.121 -0.827 0.910 1.236 sum -11.820 -0.506 -21.402 24.455 Atomic orbital electron populations 1.22404 0.88763 1.04757 1.06207 1.22525 0.98152 0.96465 0.80950 0.87478 1.86608 1.76951 1.42324 1.20018 1.24168 0.73713 0.85999 0.85623 1.90599 1.47823 1.16962 1.84076 1.21256 0.98575 0.95275 0.85467 0.89452 1.21617 0.90857 1.02002 1.00588 1.21579 1.01991 0.99061 0.92523 1.21657 0.94702 1.00282 0.98874 1.22280 0.96428 0.98524 0.89744 1.61699 1.18932 1.43872 1.02183 1.22607 0.86169 1.00684 1.04084 1.20620 0.80478 0.84856 0.85185 1.90659 1.39198 1.28734 1.86853 1.47802 1.50297 1.29674 1.05039 1.22296 0.95006 0.86163 1.04110 1.19439 0.93896 0.92869 0.83547 1.21559 1.05265 1.19462 1.11829 0.95643 1.25900 0.95000 0.99493 0.98382 1.70054 1.16674 1.44294 1.27522 0.85672 0.80930 0.78485 0.77603 1.20188 1.20005 1.15533 0.90857 0.86695 0.89688 0.91821 0.91288 0.90109 0.90643 0.91746 0.88646 0.88483 0.93418 0.91863 0.89163 0.94605 0.88521 0.90634 0.89928 0.92032 0.95943 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.18 71.98 0.66 -3.06 16 2 C 0.08 2.54 2.18 29.85 0.07 2.60 16 3 H 0.11 3.50 6.42 -2.39 -0.02 3.49 16 4 O -0.34 -11.77 9.41 -45.08 -0.42 -12.20 16 5 C 0.46 13.99 6.37 71.23 0.45 14.45 16 6 O -0.51 -16.72 13.74 21.96 0.30 -16.42 16 7 C 0.10 2.46 2.35 44.19 0.10 2.57 16 8 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 9 C -0.11 -2.61 5.36 30.65 0.16 -2.44 16 10 C -0.11 -1.81 6.00 30.67 0.18 -1.63 16 11 C -0.12 -1.55 6.09 30.65 0.19 -1.36 16 12 C 0.06 0.79 5.46 86.33 0.47 1.26 16 13 N -0.54 -11.12 4.51 -901.60 -4.06 -15.18 16 14 C 0.01 0.22 9.10 127.69 1.16 1.38 16 15 C 0.50 21.43 7.15 87.66 0.63 22.06 16 16 O -0.57 -30.37 16.08 15.78 0.25 -30.11 16 17 N -0.60 -24.24 2.86 -851.15 -2.43 -26.67 16 18 C 0.07 1.82 8.80 127.77 1.12 2.94 16 19 C 0.22 10.83 4.23 85.63 0.36 11.19 16 20 C -0.54 -32.20 9.94 25.60 0.25 -31.94 16 21 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 22 C 0.01 0.61 5.47 84.65 0.46 1.08 16 23 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 24 Si 0.95 44.06 27.47 68.60 1.88 45.95 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.23 -9.46 6.54 99.48 0.65 -8.81 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 2.06 4.53 -2.39 -0.01 2.05 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.10 1.07 8.09 -2.39 -0.02 1.05 16 38 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 1.46 5.63 -2.39 -0.01 1.44 16 40 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 41 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.10 1.88 6.95 -2.39 -0.02 1.86 16 43 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 44 H 0.08 1.96 6.01 -2.38 -0.01 1.95 16 45 H 0.06 2.64 7.13 -2.39 -0.02 2.62 16 46 H 0.02 1.16 6.85 -2.39 -0.02 1.14 16 47 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -81.53 370.17 3.00 -78.53 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.90 Total: 16.94 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 6.28 Total: 19.10 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -6.20 Total: -101.79 kcal Atomic # 8 Polarization: -58.86 SS G_CDS: 0.13 Total: -58.73 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Total: -81.53 3.00 -78.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745078247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.452 kcal (2) G-P(sol) polarization free energy of solvation -81.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds