Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.46746 * 2 1 4 4 C 1.34230 * 116.99640 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99961 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99726 * 179.97438 * 4 3 2 7 7 C 1.52998 * 110.86009 * 56.21086 * 6 4 3 8 8 C 1.54633 * 111.00530 * 292.39697 * 6 4 3 9 9 C 1.51285 * 104.25817 * 266.45263 * 8 6 4 10 10 O 1.21285 * 124.94432 * 164.00823 * 9 8 6 11 11 N 1.34419 * 110.11428 * 344.13742 * 9 8 6 12 12 C 1.46502 * 124.35402 * 179.43652 * 11 9 8 13 13 N 1.46892 * 109.47063 * 269.70815 * 12 11 9 14 14 C 1.46900 * 111.00500 * 81.04315 * 13 12 11 15 15 C 1.46905 * 110.99692 * 204.99711 * 13 12 11 16 16 H 1.09004 * 109.47405 * 55.00104 * 15 13 12 17 17 C 1.52999 * 109.47374 * 294.99857 * 15 13 12 18 18 C 1.50701 * 109.47053 * 174.99622 * 15 13 12 19 19 H 1.08004 * 119.99778 * 95.04337 * 18 15 13 20 20 C 1.37878 * 120.00096 * 275.03765 * 18 15 13 21 21 N 1.31520 * 119.99634 * 185.02946 * 20 18 15 22 22 Si 1.86795 * 120.00102 * 5.02323 * 20 18 15 23 23 H 1.48504 * 109.46679 * 84.76690 * 22 20 18 24 24 H 1.48496 * 109.47128 * 204.76193 * 22 20 18 25 25 H 1.48492 * 109.47330 * 324.76825 * 22 20 18 26 26 C 1.46764 * 111.29696 * 359.17668 * 11 9 8 27 27 H 1.08996 * 109.47090 * 59.99944 * 1 2 3 28 28 H 1.08997 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47033 * 299.99689 * 1 2 3 30 30 H 1.09004 * 109.47033 * 240.00311 * 2 1 3 31 31 H 1.08992 * 109.47140 * 119.99543 * 2 1 3 32 32 H 1.08998 * 109.47530 * 183.79093 * 7 6 4 33 33 H 1.09005 * 109.46767 * 303.79067 * 7 6 4 34 34 H 1.09001 * 109.47209 * 63.78775 * 7 6 4 35 35 H 1.09008 * 110.48228 * 25.33991 * 8 6 4 36 36 H 1.08994 * 110.49227 * 147.98684 * 8 6 4 37 37 H 1.09002 * 109.46884 * 149.70176 * 12 11 9 38 38 H 1.08999 * 109.46340 * 29.70487 * 12 11 9 39 39 H 1.08998 * 109.47417 * 183.94893 * 14 13 12 40 40 H 1.08999 * 109.47144 * 303.95467 * 14 13 12 41 41 H 1.08996 * 109.46637 * 63.95433 * 14 13 12 42 42 H 1.08999 * 109.46805 * 54.76384 * 17 15 13 43 43 H 1.08999 * 109.47020 * 294.76631 * 17 15 13 44 44 H 1.08992 * 109.47189 * 174.76521 * 17 15 13 45 45 H 0.97000 * 119.99768 * 180.02562 * 21 20 18 46 46 H 1.09004 * 110.24712 * 136.27681 * 26 11 9 47 47 H 1.08996 * 110.24449 * 258.18975 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 -0.0012 7 6 3.3945 3.7452 1.1870 8 6 3.6237 3.6595 -1.3359 9 6 4.8461 3.3898 -2.1854 10 8 4.9042 3.5421 -3.3873 11 7 5.8576 2.9541 -1.4148 12 6 7.1835 2.5888 -1.9196 13 7 7.2015 1.1598 -2.2591 14 6 6.6051 0.9250 -3.5810 15 6 8.5665 0.6205 -2.1942 16 1 8.9912 0.8241 -1.2112 17 6 9.4288 1.2841 -3.2698 18 6 8.5301 -0.8680 -2.4271 19 1 8.6980 -1.2638 -3.4178 20 6 8.2826 -1.7245 -1.3753 21 7 8.3485 -3.0254 -1.5572 22 14 7.8539 -1.0372 0.3079 23 1 6.3967 -0.7578 0.3719 24 1 8.2142 -2.0281 1.3536 25 1 8.6095 0.2205 0.5362 26 6 5.4649 2.8971 -0.0018 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.7711 4.7663 1.1276 33 1 2.3048 3.7578 1.1637 34 1 3.7327 3.2867 2.1163 35 1 2.7312 3.2440 -1.8041 36 1 3.5063 4.7307 -1.1724 37 1 7.9321 2.7897 -1.1532 38 1 7.4078 3.1766 -2.8097 39 1 6.5673 -0.1464 -3.7775 40 1 5.5950 1.3341 -3.6016 41 1 7.2106 1.4133 -4.3445 42 1 9.3801 2.3672 -3.1574 43 1 9.0587 1.0041 -4.2560 44 1 10.4619 0.9537 -3.1622 45 1 8.1740 -3.6280 -0.8174 46 1 5.8181 1.9705 0.4508 47 1 5.8662 3.7560 0.5361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774551444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -104.468183 kcal Electronic energy + Delta-G solvation = -28475.952879 eV Core-core repulsion = 24659.535778 eV Total energy + Delta-G solvation = -3816.417101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.23239 -39.66268 -37.12887 -36.92089 -36.06355 -33.59512 -32.15903 -31.65046 -29.63268 -28.64597 -26.82997 -25.74973 -25.44304 -24.65881 -22.89834 -22.46683 -20.17011 -19.54761 -18.89567 -17.65374 -16.93245 -16.86529 -16.57945 -16.04868 -15.63447 -15.12318 -14.55084 -14.27158 -14.20732 -13.83968 -13.65988 -13.49021 -13.43154 -13.06766 -12.88263 -12.71457 -12.59751 -12.48737 -12.30968 -12.09748 -11.95939 -11.77327 -11.66232 -11.37209 -11.23990 -11.00191 -10.89177 -10.64328 -10.55609 -10.43282 -10.22611 -9.84875 -9.59442 -9.58565 -9.09161 -8.63499 -8.37902 -7.21047 -6.00776 -4.04920 2.23751 2.48778 2.75162 3.26523 3.46020 3.52888 3.71378 4.03620 4.22860 4.38143 4.60427 4.65868 4.81265 4.85787 4.88151 4.94936 5.18070 5.30835 5.32312 5.36255 5.43611 5.47141 5.59773 5.61834 5.63858 5.70539 5.78252 5.81151 5.85407 5.89488 6.16162 6.28291 6.42021 6.44076 6.45437 6.56262 6.72701 6.86946 7.10309 7.21179 7.36344 7.67714 7.80524 8.08743 8.23528 8.44378 8.62500 9.01585 9.64261 11.10158 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.005943 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.798453 B = 4710.498229 C = 5837.905604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.461 3.539 5 O -0.464 6.464 6 C -0.066 4.066 7 C -0.133 4.133 8 C -0.141 4.141 9 C 0.515 3.485 10 O -0.531 6.531 11 N -0.597 5.597 12 C 0.280 3.720 13 N -0.544 5.544 14 C 0.047 3.953 15 C 0.170 3.830 16 H 0.050 0.950 17 C -0.164 4.164 18 C -0.501 4.501 19 H 0.070 0.930 20 C 0.084 3.916 21 N -0.898 5.898 22 Si 0.889 3.111 23 H -0.250 1.250 24 H -0.305 1.305 25 H -0.274 1.274 26 C 0.115 3.885 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.025 0.975 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.263 0.737 46 H 0.099 0.901 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 14.433 7.638 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.301 3.699 5 O -0.348 6.348 6 C -0.068 4.068 7 C -0.190 4.190 8 C -0.181 4.181 9 C 0.301 3.699 10 O -0.408 6.408 11 N -0.331 5.331 12 C 0.069 3.931 13 N -0.271 5.271 14 C -0.101 4.101 15 C 0.065 3.935 16 H 0.068 0.932 17 C -0.224 4.224 18 C -0.539 4.539 19 H 0.088 0.912 20 C -0.120 4.120 21 N -0.535 5.535 22 Si 0.717 3.283 23 H -0.174 1.174 24 H -0.233 1.233 25 H -0.199 1.199 26 C -0.008 4.008 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.704 13.719 7.399 20.755 hybrid contribution 0.227 0.274 0.359 0.505 sum -13.478 13.994 7.757 20.920 Atomic orbital electron populations 1.21789 0.92640 1.02957 1.03283 1.23048 0.95156 0.80114 1.03049 1.86423 1.24284 1.32458 1.84497 1.23131 0.80931 0.91962 0.73883 1.90897 1.59803 1.42001 1.42067 1.21371 0.96394 0.90460 0.98594 1.21778 1.02441 0.99492 0.95313 1.22485 0.99164 1.02999 0.93474 1.20671 0.85132 0.76696 0.87385 1.90714 1.83150 1.53846 1.13101 1.48483 1.13743 1.63592 1.07268 1.21899 0.81327 0.91864 0.97971 1.62681 1.24065 1.10999 1.29308 1.22079 0.97092 1.02300 0.88667 1.19968 0.82899 0.95691 0.94924 0.93173 1.22355 1.01215 0.97406 1.01396 1.20790 1.48789 0.87453 0.96883 0.91156 1.25026 0.93030 0.94475 0.99461 1.69944 1.48632 1.02346 1.32617 0.86677 0.81434 0.77586 0.82581 1.17384 1.23268 1.19946 1.22132 0.90468 1.04274 0.83951 0.91500 0.90255 0.91633 0.90948 0.91195 0.90497 0.90486 0.91309 0.87478 0.86533 0.90157 0.92646 0.90660 0.93694 0.96836 0.95559 0.93192 0.92887 0.92780 0.88281 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -4.62 10.02 -39.26 -0.39 -5.01 16 4 C 0.46 6.95 6.60 36.00 0.24 7.18 16 5 O -0.46 -9.29 15.21 -18.75 -0.29 -9.57 16 6 C -0.07 -0.78 0.95 -154.03 -0.15 -0.93 16 7 C -0.13 -0.99 8.43 37.16 0.31 -0.68 16 8 C -0.14 -1.65 5.96 -26.74 -0.16 -1.81 16 9 C 0.51 8.55 7.28 -10.86 -0.08 8.47 16 10 O -0.53 -10.64 16.25 5.55 0.09 -10.55 16 11 N -0.60 -9.98 3.14 -175.91 -0.55 -10.54 16 12 C 0.28 5.22 4.78 -63.32 -0.30 4.92 16 13 N -0.54 -12.21 4.39 -240.20 -1.05 -13.26 16 14 C 0.05 1.06 8.71 60.06 0.52 1.58 16 15 C 0.17 4.03 1.65 -68.86 -0.11 3.92 16 16 H 0.05 1.21 5.52 -51.93 -0.29 0.93 16 17 C -0.16 -3.40 8.47 37.16 0.31 -3.09 16 18 C -0.50 -14.18 7.71 -34.44 -0.27 -14.45 16 19 H 0.07 2.17 8.05 -52.48 -0.42 1.75 16 20 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 21 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 22 Si 0.89 22.99 27.27 -169.99 -4.64 18.35 16 23 H -0.25 -6.69 7.04 56.52 0.40 -6.29 16 24 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 25 H -0.27 -6.65 6.14 56.52 0.35 -6.31 16 26 C 0.12 1.59 6.24 -3.12 -0.02 1.57 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 31 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 33 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.11 1.25 7.89 -51.92 -0.41 0.84 16 36 H 0.12 0.97 7.84 -51.93 -0.41 0.57 16 37 H 0.08 1.37 7.72 -51.93 -0.40 0.97 16 38 H 0.06 1.04 7.21 -51.93 -0.37 0.67 16 39 H 0.07 1.88 7.12 -51.93 -0.37 1.51 16 40 H 0.04 1.02 5.92 -51.93 -0.31 0.71 16 41 H 0.01 0.29 6.39 -51.93 -0.33 -0.04 16 42 H 0.03 0.47 6.89 -51.93 -0.36 0.11 16 43 H 0.05 1.05 6.68 -51.93 -0.35 0.71 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.10 1.68 7.02 -51.93 -0.36 1.31 16 47 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -35.85 372.79 -7.40 -43.25 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.78 Total: -0.21 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 0.82 Total: 9.18 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.83 Total: -51.06 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.59 Total: -25.14 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.64 Total: 18.35 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.85 -7.40 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774551444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.216 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds