Wall clock time and date at job start Fri Apr 10 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.46746 * 2 1 4 4 C 1.34230 * 116.99640 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99961 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99726 * 179.97438 * 4 3 2 7 7 C 1.52998 * 110.86009 * 56.21086 * 6 4 3 8 8 C 1.54633 * 111.00530 * 292.39697 * 6 4 3 9 9 C 1.51285 * 104.25817 * 266.45263 * 8 6 4 10 10 O 1.21285 * 124.94432 * 164.00823 * 9 8 6 11 11 N 1.34419 * 110.11428 * 344.13742 * 9 8 6 12 12 C 1.46502 * 124.35402 * 179.43652 * 11 9 8 13 13 N 1.46892 * 109.47063 * 269.70815 * 12 11 9 14 14 C 1.46900 * 111.00500 * 81.04315 * 13 12 11 15 15 C 1.46905 * 110.99692 * 204.99711 * 13 12 11 16 16 H 1.09004 * 109.47405 * 55.00104 * 15 13 12 17 17 C 1.52999 * 109.47374 * 294.99857 * 15 13 12 18 18 C 1.50701 * 109.47053 * 174.99622 * 15 13 12 19 19 H 1.08004 * 119.99778 * 95.04337 * 18 15 13 20 20 C 1.37878 * 120.00096 * 275.03765 * 18 15 13 21 21 N 1.31520 * 119.99634 * 185.02946 * 20 18 15 22 22 Si 1.86795 * 120.00102 * 5.02323 * 20 18 15 23 23 H 1.48504 * 109.46679 * 84.76690 * 22 20 18 24 24 H 1.48496 * 109.47128 * 204.76193 * 22 20 18 25 25 H 1.48492 * 109.47330 * 324.76825 * 22 20 18 26 26 C 1.46764 * 111.29696 * 359.17668 * 11 9 8 27 27 H 1.08996 * 109.47090 * 59.99944 * 1 2 3 28 28 H 1.08997 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47033 * 299.99689 * 1 2 3 30 30 H 1.09004 * 109.47033 * 240.00311 * 2 1 3 31 31 H 1.08992 * 109.47140 * 119.99543 * 2 1 3 32 32 H 1.08998 * 109.47530 * 183.79093 * 7 6 4 33 33 H 1.09005 * 109.46767 * 303.79067 * 7 6 4 34 34 H 1.09001 * 109.47209 * 63.78775 * 7 6 4 35 35 H 1.09008 * 110.48228 * 25.33991 * 8 6 4 36 36 H 1.08994 * 110.49227 * 147.98684 * 8 6 4 37 37 H 1.09002 * 109.46884 * 149.70176 * 12 11 9 38 38 H 1.08999 * 109.46340 * 29.70487 * 12 11 9 39 39 H 1.08998 * 109.47417 * 183.94893 * 14 13 12 40 40 H 1.08999 * 109.47144 * 303.95467 * 14 13 12 41 41 H 1.08996 * 109.46637 * 63.95433 * 14 13 12 42 42 H 1.08999 * 109.46805 * 54.76384 * 17 15 13 43 43 H 1.08999 * 109.47020 * 294.76631 * 17 15 13 44 44 H 1.08992 * 109.47189 * 174.76521 * 17 15 13 45 45 H 0.97000 * 119.99768 * 180.02562 * 21 20 18 46 46 H 1.09004 * 110.24712 * 136.27681 * 26 11 9 47 47 H 1.08996 * 110.24449 * 258.18975 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 -0.0012 7 6 3.3945 3.7452 1.1870 8 6 3.6237 3.6595 -1.3359 9 6 4.8461 3.3898 -2.1854 10 8 4.9042 3.5421 -3.3873 11 7 5.8576 2.9541 -1.4148 12 6 7.1835 2.5888 -1.9196 13 7 7.2015 1.1598 -2.2591 14 6 6.6051 0.9250 -3.5810 15 6 8.5665 0.6205 -2.1942 16 1 8.9912 0.8241 -1.2112 17 6 9.4288 1.2841 -3.2698 18 6 8.5301 -0.8680 -2.4271 19 1 8.6980 -1.2638 -3.4178 20 6 8.2826 -1.7245 -1.3753 21 7 8.3485 -3.0254 -1.5572 22 14 7.8539 -1.0372 0.3079 23 1 6.3967 -0.7578 0.3719 24 1 8.2142 -2.0281 1.3536 25 1 8.6095 0.2205 0.5362 26 6 5.4649 2.8971 -0.0018 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.7711 4.7663 1.1276 33 1 2.3048 3.7578 1.1637 34 1 3.7327 3.2867 2.1163 35 1 2.7312 3.2440 -1.8041 36 1 3.5063 4.7307 -1.1724 37 1 7.9321 2.7897 -1.1532 38 1 7.4078 3.1766 -2.8097 39 1 6.5673 -0.1464 -3.7775 40 1 5.5950 1.3341 -3.6016 41 1 7.2106 1.4133 -4.3445 42 1 9.3801 2.3672 -3.1574 43 1 9.0587 1.0041 -4.2560 44 1 10.4619 0.9537 -3.1622 45 1 8.1740 -3.6280 -0.8174 46 1 5.8181 1.9705 0.4508 47 1 5.8662 3.7560 0.5361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774551444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:25 Heat of formation + Delta-G solvation = -130.263774 kcal Electronic energy + Delta-G solvation = -28477.071460 eV Core-core repulsion = 24659.535778 eV Total energy + Delta-G solvation = -3817.535682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37292 -40.89844 -38.85309 -38.11100 -37.30909 -35.03862 -34.09747 -32.54223 -31.31972 -29.76535 -28.20986 -27.45318 -26.94709 -25.72031 -24.48501 -23.42967 -21.43965 -21.02824 -20.38954 -19.03405 -18.75112 -18.07526 -17.68658 -17.37059 -17.14400 -16.32880 -16.30194 -15.85087 -15.36542 -15.27561 -15.05815 -14.80765 -14.73087 -14.57918 -14.18998 -13.94763 -13.69634 -13.56912 -13.40540 -13.26247 -13.18045 -12.95025 -12.86218 -12.76023 -12.63875 -12.55928 -12.50529 -12.34883 -11.98246 -11.82428 -11.67286 -11.58373 -11.37838 -11.13132 -10.88668 -10.78621 -9.89577 -8.96851 -8.30019 -6.37067 1.09284 1.33039 1.41565 1.47381 1.56122 1.60380 2.04920 2.42272 2.96653 3.07483 3.22490 3.48451 3.56969 3.71244 3.92723 4.00790 4.04815 4.15738 4.29523 4.31794 4.34904 4.46267 4.55659 4.58381 4.61988 4.65528 4.68101 4.69184 4.77118 4.80987 4.89549 4.94936 4.96475 5.04496 5.11481 5.20150 5.29924 5.34269 5.41683 5.45904 5.58174 6.01099 6.17154 6.44590 6.52496 6.67415 6.76994 7.11563 7.34899 8.84702 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.005943 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.798453 B = 4710.498229 C = 5837.905604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.348 6.348 4 C 0.457 3.543 5 O -0.525 6.525 6 C -0.058 4.058 7 C -0.126 4.126 8 C -0.126 4.126 9 C 0.502 3.498 10 O -0.574 6.574 11 N -0.604 5.604 12 C 0.281 3.719 13 N -0.560 5.560 14 C 0.065 3.935 15 C 0.175 3.825 16 H 0.056 0.944 17 C -0.156 4.156 18 C -0.499 4.499 19 H 0.028 0.972 20 C 0.027 3.973 21 N -0.947 5.947 22 Si 0.955 3.045 23 H -0.267 1.267 24 H -0.306 1.306 25 H -0.242 1.242 26 C 0.109 3.891 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.164 0.836 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.022 0.978 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.263 0.737 46 H 0.065 0.935 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 18.476 9.922 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.265 6.265 4 C 0.300 3.700 5 O -0.412 6.412 6 C -0.060 4.060 7 C -0.183 4.183 8 C -0.166 4.166 9 C 0.291 3.709 10 O -0.454 6.454 11 N -0.337 5.337 12 C 0.070 3.930 13 N -0.287 5.287 14 C -0.083 4.083 15 C 0.069 3.931 16 H 0.074 0.926 17 C -0.215 4.215 18 C -0.537 4.537 19 H 0.046 0.954 20 C -0.172 4.172 21 N -0.587 5.587 22 Si 0.781 3.219 23 H -0.192 1.192 24 H -0.234 1.234 25 H -0.165 1.165 26 C -0.013 4.013 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.182 0.818 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.031 17.810 9.705 25.245 hybrid contribution 0.584 -1.012 -0.450 1.252 sum -14.447 16.798 9.256 24.011 Atomic orbital electron populations 1.21788 0.89355 1.04290 1.04219 1.23241 0.97688 0.79590 1.01656 1.86443 1.23355 1.32910 1.83771 1.24029 0.81061 0.92959 0.71925 1.90883 1.61093 1.44222 1.45033 1.21531 0.94987 0.88795 1.00650 1.21860 1.03192 1.00298 0.92936 1.22526 0.96302 1.05754 0.91972 1.21544 0.86412 0.75726 0.87241 1.90688 1.84011 1.55589 1.15086 1.48561 1.13177 1.63116 1.08855 1.21871 0.83374 0.88878 0.98860 1.62373 1.23127 1.14296 1.28904 1.21809 0.97197 0.99793 0.89503 1.19800 0.84183 0.92960 0.96171 0.92616 1.22221 1.00603 0.99221 0.99483 1.21031 1.47424 0.90431 0.94819 0.95365 1.25847 0.93341 0.94617 1.03410 1.70079 1.51096 1.03817 1.33743 0.85632 0.80175 0.78054 0.78042 1.19243 1.23408 1.16532 1.22424 0.92018 1.04672 0.82179 0.91054 0.88772 0.90093 0.93374 0.91756 0.87075 0.89295 0.91033 0.87427 0.81847 0.87923 0.92570 0.94309 0.93999 0.95988 0.92217 0.94449 0.92432 0.92873 0.91602 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 10.29 71.98 0.74 -1.28 16 2 C 0.05 1.22 6.19 71.98 0.45 1.67 16 3 O -0.35 -8.52 10.02 -51.42 -0.52 -9.04 16 4 C 0.46 13.32 6.60 71.23 0.47 13.79 16 5 O -0.52 -21.43 15.21 21.96 0.33 -21.09 16 6 C -0.06 -1.17 0.95 -51.87 -0.05 -1.22 16 7 C -0.13 -1.21 8.43 71.98 0.61 -0.61 16 8 C -0.13 -2.47 5.96 30.59 0.18 -2.29 16 9 C 0.50 15.62 7.28 87.90 0.64 16.26 16 10 O -0.57 -22.42 16.25 -3.04 -0.05 -22.47 16 11 N -0.60 -18.79 3.14 -829.03 -2.61 -21.39 16 12 C 0.28 9.88 4.78 170.81 0.82 10.69 16 13 N -0.56 -24.99 4.39 -913.85 -4.01 -29.00 16 14 C 0.07 3.05 8.71 127.69 1.11 4.16 16 15 C 0.17 8.21 1.65 44.17 0.07 8.28 16 16 H 0.06 2.58 5.52 -2.39 -0.01 2.57 16 17 C -0.16 -6.27 8.47 71.98 0.61 -5.66 16 18 C -0.50 -29.24 7.71 25.60 0.20 -29.04 16 19 H 0.03 1.84 8.05 -2.91 -0.02 1.82 16 20 C 0.03 1.62 5.47 84.65 0.46 2.08 16 21 N -0.95 -61.80 13.96 21.45 0.30 -61.50 16 22 Si 0.95 48.73 27.27 68.60 1.87 50.61 16 23 H -0.27 -14.43 7.04 99.48 0.70 -13.73 16 24 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 25 H -0.24 -10.91 6.14 99.48 0.61 -10.29 16 26 C 0.11 2.66 6.24 86.83 0.54 3.20 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.05 1.35 8.13 -2.38 -0.02 1.33 16 31 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.11 0.40 8.06 -2.39 -0.02 0.38 16 33 H 0.09 0.71 8.04 -2.38 -0.02 0.69 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.11 2.18 7.89 -2.38 -0.02 2.16 16 36 H 0.16 1.72 7.84 -2.39 -0.02 1.70 16 37 H 0.10 3.14 7.72 -2.39 -0.02 3.12 16 38 H 0.06 1.98 7.21 -2.39 -0.02 1.96 16 39 H 0.04 2.04 7.12 -2.39 -0.02 2.03 16 40 H 0.04 1.95 5.92 -2.39 -0.01 1.93 16 41 H 0.02 0.96 6.39 -2.39 -0.02 0.95 16 42 H 0.06 1.99 6.89 -2.39 -0.02 1.98 16 43 H 0.04 1.57 6.68 -2.39 -0.02 1.55 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 46 H 0.07 2.11 7.02 -2.38 -0.02 2.09 16 47 H 0.13 1.94 7.89 -2.39 -0.02 1.92 16 Total: -1.00 -84.69 372.79 3.02 -81.67 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.85 Total: 12.18 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.85 Total: 20.04 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -6.32 Total: -111.89 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.23 Total: -52.60 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.87 Total: 50.61 kcal Total: -84.69 3.02 -81.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774551444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.593 kcal (2) G-P(sol) polarization free energy of solvation -84.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds