Wall clock time and date at job start Fri Apr 10 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99776 * 2 1 4 4 O 1.20827 * 119.99882 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00066 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.78705 * 354.91038 * 5 3 2 7 7 C 1.53694 * 109.70209 * 115.64661 * 5 3 2 8 8 N 1.46904 * 109.25911 * 173.68678 * 7 5 3 9 9 C 1.46896 * 111.00329 * 172.61032 * 8 7 5 10 10 H 1.08993 * 109.47385 * 173.70408 * 9 8 7 11 11 C 1.53001 * 109.47151 * 53.70171 * 9 8 7 12 12 C 1.53008 * 109.46947 * 293.70477 * 9 8 7 13 13 C 1.53000 * 109.46729 * 296.41774 * 12 9 8 14 14 C 1.50701 * 109.46721 * 184.97755 * 13 12 9 15 15 H 1.08000 * 120.00438 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99817 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99789 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47215 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46779 * 120.00336 * 18 16 14 21 21 H 1.48498 * 109.47049 * 239.99792 * 18 16 14 22 22 C 1.46901 * 111.26780 * 296.76092 * 8 7 5 23 23 C 1.53243 * 109.34049 * 63.10042 * 22 8 7 24 24 N 1.47071 * 108.52169 * 306.17078 * 23 22 8 25 25 C 1.34784 * 120.88237 * 231.18451 * 24 23 22 26 26 C 1.50694 * 119.99611 * 355.80773 * 25 24 23 27 27 O 1.21280 * 119.99925 * 175.52846 * 25 24 23 28 28 H 1.09003 * 109.46981 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46995 * 299.99660 * 1 2 3 30 30 H 1.08992 * 109.47795 * 60.00166 * 1 2 3 31 31 H 1.09005 * 109.64880 * 53.68417 * 7 5 3 32 32 H 1.08998 * 109.42593 * 293.55771 * 7 5 3 33 33 H 1.08996 * 109.46915 * 180.02562 * 11 9 8 34 34 H 1.09006 * 109.46967 * 300.00223 * 11 9 8 35 35 H 1.08998 * 109.46915 * 59.99903 * 11 9 8 36 36 H 1.08996 * 109.46805 * 56.41727 * 12 9 8 37 37 H 1.08993 * 109.47018 * 176.42309 * 12 9 8 38 38 H 1.09001 * 109.47649 * 304.98245 * 13 12 9 39 39 H 1.09005 * 109.46984 * 64.98582 * 13 12 9 40 40 H 0.96989 * 119.99889 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.49408 * 303.14516 * 22 8 7 42 42 H 1.09001 * 109.49033 * 183.06079 * 22 8 7 43 43 H 1.08997 * 109.62670 * 186.45872 * 23 22 8 44 44 H 1.09007 * 109.78625 * 65.97666 * 23 22 8 45 45 H 1.09001 * 109.47131 * 179.72139 * 26 25 24 46 46 H 1.09005 * 109.47174 * 299.71723 * 26 25 24 47 47 H 1.09004 * 109.47727 * 59.71845 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9883 0.2741 0.0900 7 6 4.0503 1.9278 -1.3051 8 7 5.5024 2.1380 -1.2319 9 6 6.0336 2.5975 -2.5221 10 1 7.0876 2.8520 -2.4112 11 6 5.2565 3.8324 -2.9828 12 6 5.8842 1.4841 -3.5608 13 6 6.7330 0.2811 -3.1445 14 6 6.6831 -0.7672 -4.2260 15 1 6.1044 -0.5927 -5.1210 16 6 7.3765 -1.9491 -4.0730 17 7 8.0808 -2.1619 -2.9829 18 14 7.3153 -3.2482 -5.4139 19 1 6.4602 -2.7685 -6.5292 20 1 8.6885 -3.5040 -5.9182 21 1 6.7492 -4.5046 -4.8605 22 6 5.8518 3.0742 -0.1552 23 6 5.4403 2.4734 1.1932 24 7 4.0179 2.1055 1.1261 25 6 3.1522 2.5139 2.0751 26 6 3.6532 3.2785 3.2731 27 8 1.9695 2.2705 1.9622 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 3.5505 2.8867 -1.4425 32 1 3.8194 1.2733 -2.1455 33 1 5.6503 4.1730 -3.9403 34 1 4.2024 3.5778 -3.0937 35 1 5.3628 4.6255 -2.2428 36 1 4.8379 1.1856 -3.6256 37 1 6.2196 1.8464 -4.5326 38 1 7.7646 0.5989 -2.9937 39 1 6.3418 -0.1357 -2.2163 40 1 8.5682 -2.9935 -2.8751 41 1 5.3269 4.0171 -0.3085 42 1 6.9273 3.2509 -0.1616 43 1 5.5914 3.2090 1.9832 44 1 6.0387 1.5861 1.3998 45 1 2.8139 3.5257 3.9233 46 1 4.3694 2.6664 3.8213 47 1 4.1385 4.1965 2.9415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172508102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:48 Heat of formation + Delta-G solvation = -97.421734 kcal Electronic energy + Delta-G solvation = -28071.743603 eV Core-core repulsion = 24255.632059 eV Total energy + Delta-G solvation = -3816.111544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.15134 -39.31919 -38.54295 -36.10171 -35.70577 -33.28770 -32.12232 -31.64410 -29.67769 -29.09637 -27.86804 -26.48402 -25.11806 -24.52674 -22.22900 -21.44573 -20.93659 -19.58390 -18.62523 -17.83054 -17.07025 -16.54857 -16.14395 -15.95134 -15.78982 -15.46369 -15.30793 -14.72493 -14.43653 -14.20690 -13.75295 -13.52485 -13.37333 -13.01900 -12.87848 -12.80135 -12.46186 -12.43305 -12.23994 -12.11390 -11.99385 -11.69170 -11.64944 -11.31053 -11.20913 -10.96876 -10.85450 -10.64527 -10.44853 -10.25051 -10.10457 -9.68557 -9.41935 -9.26545 -8.95742 -8.82155 -8.27590 -7.98024 -5.92024 -3.93269 2.20672 2.48385 2.81223 3.11188 3.34711 3.42571 3.46266 4.03681 4.44234 4.51830 4.77976 4.84045 4.90795 5.03162 5.07418 5.13288 5.16097 5.23714 5.25527 5.29212 5.32815 5.44041 5.49161 5.50276 5.57383 5.61720 5.66112 5.73293 5.82209 5.90886 6.03139 6.18358 6.25171 6.27714 6.56834 6.62573 6.75516 7.15891 7.21839 7.25225 7.37298 7.81287 7.94006 8.01145 8.15873 8.18280 8.53051 9.15466 9.70063 11.18881 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.004135 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.492965 B = 6769.236709 C = 7599.222357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.358 6.358 3 C 0.475 3.525 4 O -0.479 6.479 5 C 0.158 3.842 6 H 0.116 0.884 7 C 0.055 3.945 8 N -0.514 5.514 9 C 0.084 3.916 10 H 0.084 0.916 11 C -0.186 4.186 12 C -0.104 4.104 13 C 0.032 3.968 14 C -0.520 4.520 15 H 0.051 0.949 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.885 3.115 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.036 3.964 23 C 0.116 3.884 24 N -0.606 5.606 25 C 0.503 3.497 26 C -0.168 4.168 27 O -0.524 6.524 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.011 0.989 39 H 0.029 0.971 40 H 0.258 0.742 41 H 0.038 0.962 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 11.431 10.893 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.364 6.364 5 C 0.053 3.947 6 H 0.134 0.866 7 C -0.074 4.074 8 N -0.238 5.238 9 C -0.023 4.023 10 H 0.102 0.898 11 C -0.245 4.245 12 C -0.142 4.142 13 C -0.005 4.005 14 C -0.559 4.559 15 H 0.069 0.931 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.713 3.287 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.093 4.093 23 C -0.007 4.007 24 N -0.343 5.343 25 C 0.292 3.708 26 C -0.227 4.227 27 O -0.400 6.400 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.029 0.971 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.852 11.035 11.034 17.469 hybrid contribution -0.403 0.031 -0.898 0.984 sum -8.255 11.066 10.136 17.127 Atomic orbital electron populations 1.23150 0.76503 1.03098 1.02310 1.86461 1.23261 1.33218 1.84560 1.22705 0.90793 0.81815 0.73102 1.90635 1.66656 1.36138 1.42967 1.20866 0.87985 0.97695 0.88104 0.86634 1.22416 0.89385 1.00315 0.95283 1.62010 1.10584 1.46112 1.05078 1.21921 0.98299 0.93754 0.88339 0.89809 1.22520 1.01362 0.99005 1.01583 1.21764 1.00807 0.96074 0.95580 1.18980 0.94129 0.90554 0.96855 1.21377 1.29164 1.01359 1.03966 0.93061 1.24975 0.95593 0.98226 0.95444 1.69975 1.31760 1.25249 1.26314 0.86652 0.77639 0.82010 0.82365 1.19886 1.21175 1.21096 1.22522 1.01704 0.93905 0.91159 1.21970 0.79585 1.01262 0.97855 1.48114 1.09915 1.52880 1.23382 1.20934 0.86053 0.79705 0.84080 1.21909 1.03927 1.00886 0.96028 1.90858 1.16226 1.56363 1.76579 0.88477 0.91957 0.92296 0.93316 0.88011 0.91963 0.92648 0.93425 0.93479 0.92886 0.97071 0.95215 0.93266 0.94428 0.88947 0.89055 0.89503 0.89132 0.89184 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.61 16 2 O -0.36 -5.79 10.56 -39.27 -0.41 -6.20 16 3 C 0.48 8.10 4.97 36.00 0.18 8.28 16 4 O -0.48 -9.19 13.73 -27.20 -0.37 -9.56 16 5 C 0.16 2.42 3.52 -68.41 -0.24 2.18 16 6 H 0.12 1.81 8.14 -51.93 -0.42 1.38 16 7 C 0.05 0.83 3.93 -3.46 -0.01 0.82 16 8 N -0.51 -7.62 4.05 -226.04 -0.92 -8.54 16 9 C 0.08 1.30 2.32 -67.71 -0.16 1.15 16 10 H 0.08 1.29 7.96 -51.93 -0.41 0.88 16 11 C -0.19 -2.45 8.45 37.16 0.31 -2.13 16 12 C -0.10 -2.02 4.54 -26.73 -0.12 -2.14 16 13 C 0.03 0.79 4.79 -27.88 -0.13 0.65 16 14 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 15 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.04 0.41 5.26 -3.70 -0.02 0.39 16 23 C 0.12 1.16 6.49 -3.60 -0.02 1.13 16 24 N -0.61 -7.92 3.00 -165.97 -0.50 -8.42 16 25 C 0.50 6.85 7.60 -10.98 -0.08 6.76 16 26 C -0.17 -1.41 8.74 36.00 0.31 -1.09 16 27 O -0.52 -9.36 12.32 -19.96 -0.25 -9.60 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.05 0.76 6.59 -51.93 -0.34 0.42 16 32 H 0.10 1.67 6.12 -51.93 -0.32 1.35 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.76 6.49 -51.93 -0.34 0.42 16 35 H 0.05 0.57 6.87 -51.93 -0.36 0.21 16 36 H 0.05 0.91 6.27 -51.93 -0.33 0.58 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.03 0.78 7.85 -51.93 -0.41 0.37 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.04 0.42 6.97 -51.93 -0.36 0.06 16 42 H 0.09 0.94 7.98 -51.93 -0.41 0.52 16 43 H 0.09 0.61 6.04 -51.93 -0.31 0.30 16 44 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 45 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 47 H 0.09 0.56 7.47 -51.93 -0.39 0.18 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -34.95 367.59 -8.27 -43.22 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.74 Total: -1.63 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 0.67 Total: 4.40 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.68 Total: -42.72 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -1.03 Total: -25.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.95 -8.27 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.199 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds