Wall clock time and date at job start Fri Apr 10 2020 18:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99776 * 2 1 4 4 O 1.20827 * 119.99882 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00066 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.78705 * 354.91038 * 5 3 2 7 7 C 1.53694 * 109.70209 * 115.64661 * 5 3 2 8 8 N 1.46904 * 109.25911 * 173.68678 * 7 5 3 9 9 C 1.46896 * 111.00329 * 172.61032 * 8 7 5 10 10 H 1.08993 * 109.47385 * 173.70408 * 9 8 7 11 11 C 1.53001 * 109.47151 * 53.70171 * 9 8 7 12 12 C 1.53008 * 109.46947 * 293.70477 * 9 8 7 13 13 C 1.53000 * 109.46729 * 296.41774 * 12 9 8 14 14 C 1.50701 * 109.46721 * 184.97755 * 13 12 9 15 15 H 1.08000 * 120.00438 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99817 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99789 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47215 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46779 * 120.00336 * 18 16 14 21 21 H 1.48498 * 109.47049 * 239.99792 * 18 16 14 22 22 C 1.46901 * 111.26780 * 296.76092 * 8 7 5 23 23 C 1.53243 * 109.34049 * 63.10042 * 22 8 7 24 24 N 1.47071 * 108.52169 * 306.17078 * 23 22 8 25 25 C 1.34784 * 120.88237 * 231.18451 * 24 23 22 26 26 C 1.50694 * 119.99611 * 355.80773 * 25 24 23 27 27 O 1.21280 * 119.99925 * 175.52846 * 25 24 23 28 28 H 1.09003 * 109.46981 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46995 * 299.99660 * 1 2 3 30 30 H 1.08992 * 109.47795 * 60.00166 * 1 2 3 31 31 H 1.09005 * 109.64880 * 53.68417 * 7 5 3 32 32 H 1.08998 * 109.42593 * 293.55771 * 7 5 3 33 33 H 1.08996 * 109.46915 * 180.02562 * 11 9 8 34 34 H 1.09006 * 109.46967 * 300.00223 * 11 9 8 35 35 H 1.08998 * 109.46915 * 59.99903 * 11 9 8 36 36 H 1.08996 * 109.46805 * 56.41727 * 12 9 8 37 37 H 1.08993 * 109.47018 * 176.42309 * 12 9 8 38 38 H 1.09001 * 109.47649 * 304.98245 * 13 12 9 39 39 H 1.09005 * 109.46984 * 64.98582 * 13 12 9 40 40 H 0.96989 * 119.99889 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.49408 * 303.14516 * 22 8 7 42 42 H 1.09001 * 109.49033 * 183.06079 * 22 8 7 43 43 H 1.08997 * 109.62670 * 186.45872 * 23 22 8 44 44 H 1.09007 * 109.78625 * 65.97666 * 23 22 8 45 45 H 1.09001 * 109.47131 * 179.72139 * 26 25 24 46 46 H 1.09005 * 109.47174 * 299.71723 * 26 25 24 47 47 H 1.09004 * 109.47727 * 59.71845 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9883 0.2741 0.0900 7 6 4.0503 1.9278 -1.3051 8 7 5.5024 2.1380 -1.2319 9 6 6.0336 2.5975 -2.5221 10 1 7.0876 2.8520 -2.4112 11 6 5.2565 3.8324 -2.9828 12 6 5.8842 1.4841 -3.5608 13 6 6.7330 0.2811 -3.1445 14 6 6.6831 -0.7672 -4.2260 15 1 6.1044 -0.5927 -5.1210 16 6 7.3765 -1.9491 -4.0730 17 7 8.0808 -2.1619 -2.9829 18 14 7.3153 -3.2482 -5.4139 19 1 6.4602 -2.7685 -6.5292 20 1 8.6885 -3.5040 -5.9182 21 1 6.7492 -4.5046 -4.8605 22 6 5.8518 3.0742 -0.1552 23 6 5.4403 2.4734 1.1932 24 7 4.0179 2.1055 1.1261 25 6 3.1522 2.5139 2.0751 26 6 3.6532 3.2785 3.2731 27 8 1.9695 2.2705 1.9622 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 3.5505 2.8867 -1.4425 32 1 3.8194 1.2733 -2.1455 33 1 5.6503 4.1730 -3.9403 34 1 4.2024 3.5778 -3.0937 35 1 5.3628 4.6255 -2.2428 36 1 4.8379 1.1856 -3.6256 37 1 6.2196 1.8464 -4.5326 38 1 7.7646 0.5989 -2.9937 39 1 6.3418 -0.1357 -2.2163 40 1 8.5682 -2.9935 -2.8751 41 1 5.3269 4.0171 -0.3085 42 1 6.9273 3.2509 -0.1616 43 1 5.5914 3.2090 1.9832 44 1 6.0387 1.5861 1.3998 45 1 2.8139 3.5257 3.9233 46 1 4.3694 2.6664 3.8213 47 1 4.1385 4.1965 2.9415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172508102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:47 Heat of formation + Delta-G solvation = -120.154726 kcal Electronic energy + Delta-G solvation = -28072.729379 eV Core-core repulsion = 24255.632059 eV Total energy + Delta-G solvation = -3817.097321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31277 -40.50629 -39.70456 -37.39040 -36.93235 -35.20109 -33.27436 -33.08790 -30.95427 -30.22450 -28.94004 -27.54649 -26.94640 -25.64756 -23.61218 -22.63214 -22.42069 -20.89516 -19.73297 -19.01523 -18.32447 -18.26470 -17.67538 -17.06885 -16.98430 -16.53795 -16.48120 -16.36882 -15.76643 -15.37476 -14.84004 -14.68632 -14.54826 -14.38813 -14.20565 -14.06028 -13.81711 -13.41041 -13.24128 -13.19764 -13.09601 -13.05416 -12.97255 -12.80109 -12.75125 -12.32062 -12.28041 -12.10382 -11.84928 -11.69883 -11.51444 -11.33275 -11.17275 -10.91368 -10.54599 -10.44096 -9.93306 -9.13293 -8.10067 -6.18831 1.02458 1.41638 1.43041 1.43817 1.54679 1.69163 2.02261 2.46554 2.94163 3.23063 3.46429 3.72663 3.80956 3.87116 3.96594 4.04577 4.24934 4.25330 4.26424 4.29837 4.35712 4.43812 4.46679 4.51131 4.56346 4.61206 4.65151 4.76185 4.77856 4.92748 4.98616 5.01397 5.08813 5.10065 5.22161 5.30739 5.39783 5.46695 5.63941 5.93562 6.03440 6.10814 6.16629 6.31351 6.39935 6.75722 7.00799 7.09097 7.48991 9.00929 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.004135 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.492965 B = 6769.236709 C = 7599.222357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.373 6.373 3 C 0.475 3.525 4 O -0.505 6.505 5 C 0.157 3.843 6 H 0.104 0.896 7 C 0.068 3.932 8 N -0.533 5.533 9 C 0.092 3.908 10 H 0.088 0.912 11 C -0.175 4.175 12 C -0.095 4.095 13 C 0.044 3.956 14 C -0.542 4.542 15 H 0.051 0.949 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.281 1.281 22 C 0.034 3.966 23 C 0.114 3.886 24 N -0.604 5.604 25 C 0.491 3.509 26 C -0.158 4.158 27 O -0.573 6.573 28 H 0.130 0.870 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.053 0.947 38 H -0.012 1.012 39 H 0.005 0.995 40 H 0.260 0.740 41 H 0.046 0.954 42 H 0.110 0.890 43 H 0.136 0.864 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.117 0.883 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 12.536 11.405 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.289 6.289 3 C 0.317 3.683 4 O -0.392 6.392 5 C 0.051 3.949 6 H 0.122 0.878 7 C -0.061 4.061 8 N -0.257 5.257 9 C -0.016 4.016 10 H 0.106 0.894 11 C -0.234 4.234 12 C -0.133 4.133 13 C 0.007 3.993 14 C -0.580 4.580 15 H 0.069 0.931 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.207 1.207 22 C -0.094 4.094 23 C -0.006 4.006 24 N -0.341 5.341 25 C 0.283 3.717 26 C -0.216 4.216 27 O -0.453 6.453 28 H 0.149 0.851 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.006 0.994 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.128 0.872 43 H 0.154 0.846 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.135 0.865 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.210 12.150 11.548 18.248 hybrid contribution -0.598 -0.353 -1.036 1.248 sum -7.809 11.798 10.511 17.625 Atomic orbital electron populations 1.23411 0.74774 1.05249 1.02033 1.86449 1.25146 1.33036 1.84308 1.23016 0.91441 0.81645 0.72236 1.90603 1.67323 1.36851 1.44388 1.20761 0.86983 0.97788 0.89372 0.87803 1.22184 0.89861 0.99507 0.94515 1.61951 1.10003 1.47990 1.05742 1.21722 0.99044 0.93078 0.87759 0.89422 1.22387 1.00301 0.98137 1.02535 1.21575 0.99247 0.95474 0.96979 1.18775 0.93466 0.91985 0.95105 1.21838 1.29015 1.02475 1.04684 0.93084 1.25812 0.95226 1.00503 0.97709 1.70092 1.32556 1.26003 1.28168 0.85601 0.77923 0.79099 0.79630 1.19040 1.20466 1.20668 1.22672 1.02882 0.93457 0.90374 1.22242 0.77554 1.02374 0.98456 1.48309 1.11186 1.52152 1.22446 1.21978 0.85469 0.79282 0.84986 1.21945 1.04575 1.01555 0.93561 1.90834 1.18467 1.58300 1.77739 0.85142 0.92793 0.92014 0.93631 0.90175 0.91146 0.93492 0.91462 0.93915 0.92827 0.99411 0.97642 0.93073 0.93542 0.87220 0.84615 0.89709 0.89242 0.86488 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.56 113.37 1.20 2.18 16 2 O -0.37 -12.46 10.56 -51.45 -0.54 -13.01 16 3 C 0.47 16.76 4.97 71.23 0.35 17.11 16 4 O -0.50 -19.95 13.73 30.04 0.41 -19.54 16 5 C 0.16 4.90 3.52 44.37 0.16 5.06 16 6 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 7 C 0.07 2.12 3.93 86.54 0.34 2.46 16 8 N -0.53 -15.50 4.05 -869.06 -3.52 -19.02 16 9 C 0.09 2.76 2.32 44.92 0.10 2.86 16 10 H 0.09 2.59 7.96 -2.39 -0.02 2.57 16 11 C -0.17 -4.29 8.45 71.98 0.61 -3.68 16 12 C -0.09 -3.71 4.54 30.60 0.14 -3.57 16 13 C 0.04 2.22 4.79 29.85 0.14 2.37 16 14 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 15 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 16 C 0.01 0.30 5.46 84.66 0.46 0.76 16 17 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 18 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 C 0.03 0.69 5.26 86.38 0.45 1.15 16 23 C 0.11 1.99 6.49 86.35 0.56 2.55 16 24 N -0.60 -15.17 3.00 -797.39 -2.39 -17.56 16 25 C 0.49 12.79 7.60 87.65 0.67 13.45 16 26 C -0.16 -2.12 8.74 71.23 0.62 -1.50 16 27 O -0.57 -20.68 12.32 21.37 0.26 -20.42 16 28 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 30 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.05 1.43 6.59 -2.38 -0.02 1.41 16 32 H 0.08 2.77 6.12 -2.39 -0.01 2.76 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.24 6.49 -2.38 -0.02 1.22 16 35 H 0.07 1.41 6.87 -2.39 -0.02 1.39 16 36 H 0.04 1.69 6.27 -2.39 -0.01 1.68 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.01 0.28 7.85 -2.38 -0.02 0.27 16 40 H 0.26 14.77 8.31 -92.72 -0.77 14.00 16 41 H 0.05 0.89 6.97 -2.39 -0.02 0.88 16 42 H 0.11 1.88 7.98 -2.39 -0.02 1.87 16 43 H 0.14 1.17 6.04 -2.39 -0.01 1.15 16 44 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 46 H 0.12 0.98 8.13 -2.38 -0.02 0.96 16 47 H 0.11 0.94 7.47 -2.38 -0.02 0.93 16 Total: -1.00 -78.45 367.59 3.52 -74.94 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.95 Total: 12.91 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 6.04 Total: 10.80 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -5.63 Total: -92.14 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: 0.13 Total: -52.97 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -78.45 3.52 -74.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.217 kcal (2) G-P(sol) polarization free energy of solvation -78.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds