Wall clock time and date at job start Fri Apr 10 2020 18:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99591 * 2 1 4 4 O 1.20821 * 120.00046 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99616 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47108 * 180.02562 * 5 3 2 7 7 C 1.34775 * 120.00121 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99967 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99878 * 179.97438 * 7 6 5 10 10 H 1.09006 * 110.72604 * 61.64305 * 9 7 6 11 11 C 1.54939 * 110.66947 * 298.54553 * 9 7 6 12 12 C 1.54596 * 102.92098 * 204.15509 * 11 9 7 13 13 C 1.53993 * 105.14236 * 21.95224 * 12 11 9 14 14 N 1.47901 * 107.05870 * 1.22847 * 13 12 11 15 15 C 1.46898 * 111.00315 * 214.15494 * 14 13 12 16 16 H 1.08999 * 109.47552 * 179.44808 * 15 14 13 17 17 C 1.53000 * 109.47085 * 299.45338 * 15 14 13 18 18 C 1.53000 * 109.47004 * 59.45143 * 15 14 13 19 19 C 1.53003 * 109.47373 * 175.96546 * 18 15 14 20 20 C 1.50700 * 109.47204 * 185.10931 * 19 18 15 21 21 H 1.07999 * 120.00222 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99627 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99847 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47032 * 89.99674 * 24 22 20 26 26 H 1.48500 * 109.46856 * 209.99947 * 24 22 20 27 27 H 1.48503 * 109.46771 * 329.99799 * 24 22 20 28 28 H 1.08999 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47154 * 299.99237 * 1 2 3 30 30 H 1.08994 * 109.47786 * 59.99699 * 1 2 3 31 31 H 1.08994 * 109.47238 * 59.99731 * 5 3 2 32 32 H 1.09000 * 109.46724 * 300.00088 * 5 3 2 33 33 H 0.97003 * 119.99367 * 359.97438 * 6 5 3 34 34 H 1.08997 * 110.72711 * 85.79110 * 11 9 7 35 35 H 1.09007 * 110.87115 * 322.58126 * 11 9 7 36 36 H 1.08999 * 110.30613 * 263.03902 * 12 11 9 37 37 H 1.08995 * 110.31108 * 140.87142 * 12 11 9 38 38 H 1.08995 * 109.91474 * 120.58077 * 13 12 11 39 39 H 1.08996 * 109.91869 * 241.87420 * 13 12 11 40 40 H 1.08998 * 109.47141 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.46930 * 300.00232 * 17 15 14 42 42 H 1.09004 * 109.46707 * 59.99626 * 17 15 14 43 43 H 1.09002 * 109.47381 * 295.96884 * 18 15 14 44 44 H 1.09005 * 109.47440 * 55.96933 * 18 15 14 45 45 H 1.08993 * 109.46972 * 305.10990 * 19 18 15 46 46 H 1.09001 * 109.46553 * 65.11036 * 19 18 15 47 47 H 0.96997 * 120.00364 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9817 2.6799 0.0002 7 6 5.2920 2.9952 -0.0007 8 8 6.1273 2.1159 -0.0016 9 6 5.7192 4.4403 -0.0005 10 1 5.3649 4.9472 0.8971 11 6 5.2090 5.1616 -1.2734 12 6 6.2017 6.3368 -1.4262 13 6 7.4588 5.9052 -0.6483 14 7 7.1960 4.5505 -0.1163 15 6 7.8419 4.3632 1.1897 16 1 7.6244 3.3623 1.5624 17 6 9.3548 4.5341 1.0396 18 6 7.3067 5.4024 2.1769 19 6 7.9034 5.1448 3.5620 20 6 7.2820 6.0876 4.5600 21 1 6.5358 6.7992 4.2386 22 6 7.6662 6.0419 5.8833 23 7 8.5745 5.1751 6.2748 24 14 6.8965 7.2111 7.1203 25 1 5.6858 6.5834 7.7078 26 1 7.8745 7.5051 8.1984 27 1 6.5175 8.4744 6.4378 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.9557 0.7810 -0.8907 32 1 3.9563 0.7806 0.8892 33 1 3.3135 3.3831 0.0005 34 1 4.1939 5.5306 -1.1269 35 1 5.2567 4.5013 -2.1394 36 1 5.7823 7.2450 -0.9933 37 1 6.4428 6.4942 -2.4774 38 1 8.3191 5.8811 -1.3171 39 1 7.6430 6.5975 0.1732 40 1 9.8341 4.3956 2.0087 41 1 9.7361 3.7939 0.3362 42 1 9.5721 5.5351 0.6668 43 1 7.5864 6.4008 1.8408 44 1 6.2205 5.3279 2.2297 45 1 7.7007 4.1159 3.8593 46 1 8.9806 5.3082 3.5296 47 1 8.8450 5.1432 7.2058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:57 Heat of formation + Delta-G solvation = -118.341093 kcal Electronic energy + Delta-G solvation = -26791.772911 eV Core-core repulsion = 22974.754236 eV Total energy + Delta-G solvation = -3817.018676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00918 -40.19330 -38.33874 -36.97393 -34.90884 -34.53270 -32.73206 -30.38805 -29.99266 -28.93368 -27.94792 -26.90146 -25.11316 -23.19206 -22.01788 -21.37410 -21.05427 -20.33859 -18.88220 -17.91538 -17.49205 -17.07963 -16.70707 -16.41066 -15.74271 -15.66343 -15.18025 -14.69712 -14.45564 -14.23936 -13.89492 -13.71382 -13.57774 -13.29476 -12.92535 -12.73656 -12.63451 -12.44620 -12.11087 -12.02401 -11.80292 -11.32839 -11.24178 -11.20786 -11.02902 -10.99271 -10.98456 -10.69479 -10.56341 -10.52902 -10.28304 -9.74561 -9.51663 -9.39613 -9.29592 -9.12545 -8.32846 -7.88275 -5.98581 -4.01284 1.72819 2.05110 2.71391 3.10520 3.31204 3.37591 3.40440 4.21172 4.33179 4.45903 4.60169 4.62124 4.71210 4.79054 4.94474 4.98852 5.03173 5.13339 5.20996 5.30583 5.36927 5.51567 5.59861 5.72688 5.77318 5.80938 5.86585 5.95975 6.04378 6.07491 6.16821 6.19868 6.36623 6.42925 6.58437 6.69469 6.84166 7.08075 7.16470 7.23568 7.41554 7.48068 7.69147 7.84672 8.01152 8.25077 8.43854 9.05674 9.62541 11.12311 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.003596 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.481949 B = 7785.494827 C = 9379.674256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.503 6.503 5 C 0.129 3.871 6 N -0.731 5.731 7 C 0.534 3.466 8 O -0.512 6.512 9 C 0.038 3.962 10 H 0.096 0.904 11 C -0.112 4.112 12 C -0.128 4.128 13 C 0.028 3.972 14 N -0.489 5.489 15 C 0.069 3.931 16 H 0.086 0.914 17 C -0.137 4.137 18 C -0.143 4.143 19 C 0.027 3.973 20 C -0.521 4.521 21 H 0.052 0.948 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.889 3.111 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.410 0.590 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.014 0.986 46 H 0.021 0.979 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.747 -6.169 -17.391 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.303 3.697 4 O -0.391 6.391 5 C 0.004 3.996 6 N -0.390 5.390 7 C 0.320 3.680 8 O -0.385 6.385 9 C -0.074 4.074 10 H 0.113 0.887 11 C -0.150 4.150 12 C -0.166 4.166 13 C -0.100 4.100 14 N -0.212 5.212 15 C -0.039 4.039 16 H 0.104 0.896 17 C -0.194 4.194 18 C -0.181 4.181 19 C -0.011 4.011 20 C -0.559 4.559 21 H 0.070 0.930 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.717 3.283 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.247 0.753 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.033 0.967 46 H 0.039 0.961 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.023 -7.003 -17.585 22.424 hybrid contribution -1.349 1.569 1.480 2.544 sum -13.372 -5.434 -16.105 21.626 Atomic orbital electron populations 1.23335 0.75581 1.04032 1.02825 1.86490 1.23957 1.32635 1.83889 1.23648 0.92007 0.81760 0.72290 1.90679 1.66849 1.36283 1.45279 1.20577 0.86466 0.86026 1.06492 1.45782 1.08457 1.06727 1.78051 1.20409 0.80943 0.91444 0.75206 1.90710 1.51068 1.49658 1.47067 1.22793 0.92260 0.91971 1.00350 0.88654 1.22441 0.98917 0.97155 0.96493 1.22380 0.95484 0.97819 1.00943 1.22950 0.97907 0.90291 0.98853 1.64787 1.04245 1.26403 1.25808 1.21998 0.94722 1.00421 0.86709 0.89612 1.21785 0.94639 1.00828 1.02190 1.22327 0.99525 0.97729 0.98557 1.19048 0.96223 0.96854 0.88925 1.21257 1.22713 1.18779 0.93186 0.92972 1.25014 0.95160 0.95694 0.98511 1.69959 1.30972 1.35785 1.16585 0.86639 0.79056 0.81388 0.81185 1.20721 1.21198 1.19943 0.87761 0.91570 0.91681 0.87001 0.86841 0.75263 0.90582 0.90594 0.91211 0.91013 0.90425 0.92005 0.91193 0.92913 0.93311 0.92992 0.93454 0.96716 0.96121 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.10 10.57 -39.27 -0.41 -3.52 16 3 C 0.46 4.59 8.03 36.01 0.29 4.88 16 4 O -0.50 -6.08 15.42 -18.75 -0.29 -6.37 16 5 C 0.13 1.28 6.27 -5.19 -0.03 1.25 16 6 N -0.73 -8.49 5.47 -61.47 -0.34 -8.82 16 7 C 0.53 7.85 7.09 -10.99 -0.08 7.77 16 8 O -0.51 -9.28 15.62 5.56 0.09 -9.19 16 9 C 0.04 0.54 2.54 -66.94 -0.17 0.37 16 10 H 0.10 1.43 5.54 -51.93 -0.29 1.14 16 11 C -0.11 -1.21 6.43 -24.87 -0.16 -1.37 16 12 C -0.13 -1.38 6.93 -25.37 -0.18 -1.55 16 13 C 0.03 0.37 5.18 -2.75 -0.01 0.36 16 14 N -0.49 -7.75 4.63 -216.08 -1.00 -8.75 16 15 C 0.07 1.28 2.33 -67.71 -0.16 1.12 16 16 H 0.09 1.79 7.30 -51.93 -0.38 1.41 16 17 C -0.14 -2.39 8.84 37.16 0.33 -2.06 16 18 C -0.14 -2.94 4.00 -26.73 -0.11 -3.05 16 19 C 0.03 0.70 4.58 -27.88 -0.13 0.57 16 20 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 21 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 24 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.41 4.34 7.43 -40.82 -0.30 4.04 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.91 5.34 -51.93 -0.28 0.63 16 40 H 0.07 1.32 6.65 -51.93 -0.35 0.98 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.79 7.09 -51.93 -0.37 0.42 16 43 H 0.05 1.04 6.13 -51.93 -0.32 0.73 16 44 H 0.05 0.97 5.83 -51.93 -0.30 0.66 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.56 6.80 -51.93 -0.35 0.21 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -34.16 374.94 -7.88 -42.04 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.54 Total: 2.54 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 0.25 Total: -4.01 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.60 Total: -43.92 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.62 Total: -19.08 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.16 -7.88 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.301 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds