Wall clock time and date at job start Fri Apr 10 2020 18:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99591 * 2 1 4 4 O 1.20821 * 120.00046 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99616 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47108 * 180.02562 * 5 3 2 7 7 C 1.34775 * 120.00121 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99967 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99878 * 179.97438 * 7 6 5 10 10 H 1.09006 * 110.72604 * 61.64305 * 9 7 6 11 11 C 1.54939 * 110.66947 * 298.54553 * 9 7 6 12 12 C 1.54596 * 102.92098 * 204.15509 * 11 9 7 13 13 C 1.53993 * 105.14236 * 21.95224 * 12 11 9 14 14 N 1.47901 * 107.05870 * 1.22847 * 13 12 11 15 15 C 1.46898 * 111.00315 * 214.15494 * 14 13 12 16 16 H 1.08999 * 109.47552 * 179.44808 * 15 14 13 17 17 C 1.53000 * 109.47085 * 299.45338 * 15 14 13 18 18 C 1.53000 * 109.47004 * 59.45143 * 15 14 13 19 19 C 1.53003 * 109.47373 * 175.96546 * 18 15 14 20 20 C 1.50700 * 109.47204 * 185.10931 * 19 18 15 21 21 H 1.07999 * 120.00222 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99627 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99847 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47032 * 89.99674 * 24 22 20 26 26 H 1.48500 * 109.46856 * 209.99947 * 24 22 20 27 27 H 1.48503 * 109.46771 * 329.99799 * 24 22 20 28 28 H 1.08999 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47154 * 299.99237 * 1 2 3 30 30 H 1.08994 * 109.47786 * 59.99699 * 1 2 3 31 31 H 1.08994 * 109.47238 * 59.99731 * 5 3 2 32 32 H 1.09000 * 109.46724 * 300.00088 * 5 3 2 33 33 H 0.97003 * 119.99367 * 359.97438 * 6 5 3 34 34 H 1.08997 * 110.72711 * 85.79110 * 11 9 7 35 35 H 1.09007 * 110.87115 * 322.58126 * 11 9 7 36 36 H 1.08999 * 110.30613 * 263.03902 * 12 11 9 37 37 H 1.08995 * 110.31108 * 140.87142 * 12 11 9 38 38 H 1.08995 * 109.91474 * 120.58077 * 13 12 11 39 39 H 1.08996 * 109.91869 * 241.87420 * 13 12 11 40 40 H 1.08998 * 109.47141 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.46930 * 300.00232 * 17 15 14 42 42 H 1.09004 * 109.46707 * 59.99626 * 17 15 14 43 43 H 1.09002 * 109.47381 * 295.96884 * 18 15 14 44 44 H 1.09005 * 109.47440 * 55.96933 * 18 15 14 45 45 H 1.08993 * 109.46972 * 305.10990 * 19 18 15 46 46 H 1.09001 * 109.46553 * 65.11036 * 19 18 15 47 47 H 0.96997 * 120.00364 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9817 2.6799 0.0002 7 6 5.2920 2.9952 -0.0007 8 8 6.1273 2.1159 -0.0016 9 6 5.7192 4.4403 -0.0005 10 1 5.3649 4.9472 0.8971 11 6 5.2090 5.1616 -1.2734 12 6 6.2017 6.3368 -1.4262 13 6 7.4588 5.9052 -0.6483 14 7 7.1960 4.5505 -0.1163 15 6 7.8419 4.3632 1.1897 16 1 7.6244 3.3623 1.5624 17 6 9.3548 4.5341 1.0396 18 6 7.3067 5.4024 2.1769 19 6 7.9034 5.1448 3.5620 20 6 7.2820 6.0876 4.5600 21 1 6.5358 6.7992 4.2386 22 6 7.6662 6.0419 5.8833 23 7 8.5745 5.1751 6.2748 24 14 6.8965 7.2111 7.1203 25 1 5.6858 6.5834 7.7078 26 1 7.8745 7.5051 8.1984 27 1 6.5175 8.4744 6.4378 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.9557 0.7810 -0.8907 32 1 3.9563 0.7806 0.8892 33 1 3.3135 3.3831 0.0005 34 1 4.1939 5.5306 -1.1269 35 1 5.2567 4.5013 -2.1394 36 1 5.7823 7.2450 -0.9933 37 1 6.4428 6.4942 -2.4774 38 1 8.3191 5.8811 -1.3171 39 1 7.6430 6.5975 0.1732 40 1 9.8341 4.3956 2.0087 41 1 9.7361 3.7939 0.3362 42 1 9.5721 5.5351 0.6668 43 1 7.5864 6.4008 1.8408 44 1 6.2205 5.3279 2.2297 45 1 7.7007 4.1159 3.8593 46 1 8.9806 5.3082 3.5296 47 1 8.8450 5.1432 7.2058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172510276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:57 Heat of formation + Delta-G solvation = -142.376487 kcal Electronic energy + Delta-G solvation = -26792.815164 eV Core-core repulsion = 22974.754236 eV Total energy + Delta-G solvation = -3818.060928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87403 -41.28281 -39.52299 -37.77124 -36.41938 -35.63435 -34.67084 -31.77933 -31.28712 -29.87576 -29.22258 -27.63175 -27.05918 -24.40832 -23.55585 -22.44895 -22.18560 -21.37984 -20.16920 -18.92336 -18.62139 -18.33868 -17.83860 -17.59574 -17.06653 -16.66544 -16.45830 -16.22785 -15.85019 -15.40598 -15.00671 -14.81034 -14.59206 -14.48521 -14.27468 -14.05501 -13.83113 -13.63198 -13.44448 -13.11456 -13.00694 -12.99185 -12.76575 -12.48196 -12.37922 -12.26803 -12.07046 -11.95171 -11.89095 -11.81118 -11.60706 -11.37925 -11.29043 -11.11594 -10.85975 -10.54013 -10.31817 -9.21746 -8.19987 -6.32297 0.93689 1.27934 1.37740 1.39155 1.50182 1.57462 2.18380 2.39137 3.08759 3.12184 3.51080 3.59880 3.64683 3.93712 4.07502 4.12201 4.16666 4.20699 4.26632 4.32103 4.33294 4.36247 4.47824 4.60907 4.70441 4.70567 4.79709 4.83979 4.94094 4.96708 5.00981 5.10781 5.12891 5.21434 5.24656 5.28102 5.28859 5.38132 5.49961 5.69542 5.83459 5.93250 6.10997 6.23841 6.38585 6.49808 6.84668 7.15553 7.36897 8.91063 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.003596 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.481949 B = 7785.494827 C = 9379.674256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.526 6.526 5 C 0.127 3.873 6 N -0.719 5.719 7 C 0.533 3.467 8 O -0.554 6.554 9 C 0.031 3.969 10 H 0.086 0.914 11 C -0.102 4.102 12 C -0.121 4.121 13 C 0.023 3.977 14 N -0.495 5.495 15 C 0.081 3.919 16 H 0.055 0.945 17 C -0.130 4.130 18 C -0.125 4.125 19 C 0.034 3.966 20 C -0.542 4.542 21 H 0.059 0.941 22 C -0.001 4.001 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.261 1.261 28 H 0.133 0.867 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.417 0.583 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.049 0.951 45 H -0.020 1.020 46 H -0.001 1.001 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.632 -4.927 -18.708 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.313 3.687 4 O -0.416 6.416 5 C 0.002 3.998 6 N -0.377 5.377 7 C 0.319 3.681 8 O -0.430 6.430 9 C -0.081 4.081 10 H 0.104 0.896 11 C -0.141 4.141 12 C -0.159 4.159 13 C -0.105 4.105 14 N -0.218 5.218 15 C -0.027 4.027 16 H 0.073 0.927 17 C -0.188 4.188 18 C -0.163 4.163 19 C -0.004 4.004 20 C -0.580 4.580 21 H 0.077 0.923 22 C -0.198 4.198 23 N -0.573 5.573 24 Si 0.788 3.212 25 H -0.199 1.199 26 H -0.207 1.207 27 H -0.185 1.185 28 H 0.151 0.849 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.255 0.745 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.067 0.933 45 H -0.002 1.002 46 H 0.017 0.983 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.954 -5.760 -18.926 24.209 hybrid contribution -0.805 1.096 1.875 2.316 sum -14.760 -4.664 -17.051 23.029 Atomic orbital electron populations 1.23632 0.73922 1.06021 1.02866 1.86484 1.25557 1.31761 1.83396 1.23515 0.91768 0.81819 0.71629 1.90669 1.67282 1.37031 1.46578 1.20686 0.86819 0.85046 1.07236 1.45657 1.07622 1.07846 1.76594 1.20560 0.81438 0.91403 0.74683 1.90692 1.52287 1.50669 1.49339 1.22914 0.91317 0.92002 1.01843 0.89617 1.22477 1.00202 0.96816 0.94569 1.22388 0.93767 0.97930 1.01832 1.23065 1.00003 0.88559 0.98841 1.64756 1.05430 1.28186 1.23455 1.21679 0.95479 0.97856 0.87731 0.92714 1.21702 0.93876 1.02061 1.01163 1.22102 0.99271 0.98951 0.96010 1.18907 0.95166 0.94474 0.91860 1.21691 1.22986 1.19239 0.94132 0.92297 1.25986 0.95567 0.97458 1.00818 1.70104 1.32397 1.37551 1.17227 0.85473 0.78156 0.79294 0.78291 1.19919 1.20705 1.18536 0.84878 0.91888 0.91313 0.85537 0.86880 0.74474 0.88034 0.90130 0.90111 0.88844 0.89544 0.93291 0.93585 0.91855 0.91776 0.92036 0.93298 1.00169 0.98253 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.79 10.57 -51.45 -0.54 -6.33 16 3 C 0.47 8.89 8.03 71.24 0.57 9.46 16 4 O -0.53 -12.16 15.42 21.98 0.34 -11.82 16 5 C 0.13 2.42 6.27 85.63 0.54 2.96 16 6 N -0.72 -16.19 5.47 -466.79 -2.55 -18.75 16 7 C 0.53 15.58 7.09 87.66 0.62 16.20 16 8 O -0.55 -20.45 15.62 -3.03 -0.05 -20.50 16 9 C 0.03 0.85 2.54 44.51 0.11 0.96 16 10 H 0.09 2.53 5.54 -2.38 -0.01 2.52 16 11 C -0.10 -1.94 6.43 31.80 0.20 -1.73 16 12 C -0.12 -2.22 6.93 31.47 0.22 -2.00 16 13 C 0.02 0.57 5.18 86.45 0.45 1.02 16 14 N -0.49 -15.46 4.63 -837.54 -3.88 -19.33 16 15 C 0.08 3.09 2.33 44.92 0.10 3.19 16 16 H 0.05 2.42 7.30 -2.39 -0.02 2.40 16 17 C -0.13 -4.67 8.84 71.98 0.64 -4.03 16 18 C -0.12 -5.25 4.00 30.60 0.12 -5.13 16 19 C 0.03 1.82 4.58 29.85 0.14 1.96 16 20 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 21 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 22 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 23 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 24 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 27 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 28 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 30 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.42 8.32 7.43 -92.71 -0.69 7.63 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.49 8.05 -2.38 -0.02 1.47 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.37 5.34 -2.39 -0.01 1.36 16 40 H 0.05 1.84 6.65 -2.39 -0.02 1.82 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.06 2.06 7.09 -2.38 -0.02 2.04 16 43 H 0.06 2.47 6.13 -2.39 -0.01 2.46 16 44 H 0.05 2.03 5.83 -2.38 -0.01 2.01 16 45 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 46 H 0.00 -0.05 6.80 -2.39 -0.02 -0.07 16 47 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -75.35 374.94 1.52 -73.83 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.28 Total: 20.10 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 5.61 Total: -6.35 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -6.15 Total: -95.70 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.25 Total: -38.65 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.35 1.52 -73.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.546 kcal (2) G-P(sol) polarization free energy of solvation -75.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds