Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.30036 * 2 1 4 4 C 1.54384 * 110.34049 * 237.71572 * 2 1 3 5 5 N 1.48436 * 104.65400 * 264.99315 * 4 2 1 6 6 C 1.34777 * 127.98166 * 140.36498 * 5 4 2 7 7 O 1.21285 * 119.99566 * 174.85732 * 6 5 4 8 8 C 1.50695 * 120.00185 * 354.85724 * 6 5 4 9 9 H 1.09005 * 109.52046 * 50.27180 * 8 6 5 10 10 C 1.53141 * 109.52601 * 290.14205 * 8 6 5 11 11 O 1.43073 * 109.14845 * 184.78422 * 10 8 6 12 12 C 1.43077 * 113.59429 * 57.95753 * 11 10 8 13 13 C 1.53144 * 109.14393 * 302.03908 * 12 11 10 14 14 O 1.43075 * 109.52718 * 170.40103 * 8 6 5 15 15 C 1.48146 * 104.18069 * 320.44594 * 5 4 2 16 16 C 1.54280 * 110.34279 * 122.17528 * 2 1 3 17 17 C 1.52995 * 110.34383 * 0.02562 * 16 2 1 18 18 C 1.53001 * 110.34296 * 237.73917 * 16 2 1 19 19 N 1.46502 * 109.47133 * 183.00940 * 18 16 2 20 20 C 1.36938 * 120.00093 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99833 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.00330 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00487 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99764 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47074 * 89.99910 * 24 22 20 26 26 H 1.48498 * 109.47052 * 210.00307 * 24 22 20 27 27 H 1.48501 * 109.46925 * 330.00219 * 24 22 20 28 28 H 1.09004 * 109.47097 * 297.82277 * 1 2 3 29 29 H 1.08997 * 109.47239 * 57.82435 * 1 2 3 30 30 H 1.09000 * 109.47098 * 177.82650 * 1 2 3 31 31 H 1.08998 * 110.41343 * 23.77687 * 4 2 1 32 32 H 1.09008 * 110.40624 * 146.20979 * 4 2 1 33 33 H 1.09000 * 109.52146 * 304.68776 * 10 8 6 34 34 H 1.09000 * 109.52408 * 64.87988 * 10 8 6 35 35 H 1.08995 * 109.52613 * 61.94337 * 12 11 10 36 36 H 1.08999 * 109.52239 * 182.08020 * 12 11 10 37 37 H 1.09006 * 109.52175 * 175.21455 * 13 12 11 38 38 H 1.08997 * 109.52931 * 295.34878 * 13 12 11 39 39 H 1.09000 * 110.40758 * 280.73102 * 15 5 4 40 40 H 1.08994 * 110.41163 * 158.40891 * 15 5 4 41 41 H 1.09006 * 109.47225 * 176.98900 * 17 16 2 42 42 H 1.09003 * 109.47191 * 296.98943 * 17 16 2 43 43 H 1.08995 * 109.47449 * 56.99164 * 17 16 2 44 44 H 1.08994 * 109.47628 * 303.01062 * 18 16 2 45 45 H 1.09005 * 109.46733 * 63.01301 * 18 16 2 46 46 H 0.96998 * 119.99903 * 0.02562 * 19 18 16 47 47 H 0.97001 * 120.00457 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7732 -1.2238 5 7 2.3147 -2.1474 -0.7205 6 6 2.0785 -3.3161 -1.3489 7 8 2.4239 -4.3602 -0.8375 8 6 1.3854 -3.3255 -2.6870 9 1 1.8761 -2.6189 -3.3564 10 6 -0.0817 -2.9250 -2.5063 11 8 -0.7587 -3.0443 -3.7611 12 6 -0.6968 -4.3589 -4.3224 13 6 0.7703 -4.7593 -4.5031 14 8 1.4486 -4.6397 -3.2491 15 6 2.8802 -1.9416 0.6332 16 6 2.0663 -0.7703 1.2244 17 6 0.9062 -1.3020 2.0683 18 6 2.9692 0.1327 2.0672 19 7 3.5245 -0.6369 3.1834 20 6 4.3670 -0.0338 4.0788 21 1 4.6224 1.0090 3.9619 22 6 4.8936 -0.7630 5.1360 23 7 5.7037 -0.1835 5.9963 24 14 4.4523 -2.5670 5.3377 25 1 5.4328 -3.4020 4.5983 26 1 4.4831 -2.9259 6.7783 27 1 3.0903 -2.8069 4.7968 28 1 -0.3633 0.4797 0.9089 29 1 -0.3633 0.5472 -0.8698 30 1 -0.3633 -1.0269 -0.0390 31 1 1.3223 -0.7889 -2.0198 32 1 2.9949 -0.3255 -1.5790 33 1 -0.5514 -3.5826 -1.7749 34 1 -0.1375 -1.8933 -2.1589 35 1 -1.1872 -5.0647 -3.6521 36 1 -1.1991 -4.3659 -5.2897 37 1 0.8261 -5.7910 -4.8505 38 1 1.2397 -4.1024 -5.2354 39 1 3.9354 -1.6764 0.5680 40 1 2.7511 -2.8381 1.2394 41 1 1.2997 -1.8882 2.8988 42 1 0.3262 -0.4649 2.4571 43 1 0.2661 -1.9316 1.4504 44 1 3.7818 0.5133 1.4486 45 1 2.3866 0.9679 2.4560 46 1 3.2954 -1.5736 3.2881 47 1 6.0714 -0.6930 6.7354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180656095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = -97.046704 kcal Electronic energy + Delta-G solvation = -27881.673381 eV Core-core repulsion = 24065.578099 eV Total energy + Delta-G solvation = -3816.095282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98604 -39.89979 -38.21856 -36.36037 -35.05522 -33.34252 -32.17507 -31.63012 -30.08542 -28.82261 -27.41574 -26.08786 -25.70649 -24.97919 -23.06826 -22.06357 -21.12339 -19.76730 -18.82927 -17.96374 -17.48469 -16.97829 -16.87485 -16.43958 -15.97561 -15.60147 -15.52103 -14.58962 -14.53988 -14.23657 -14.15896 -13.88570 -13.77205 -13.65542 -13.26155 -12.89581 -12.79336 -12.58402 -12.24799 -12.23263 -12.02010 -11.73826 -11.51466 -11.49734 -11.32656 -11.23018 -10.96392 -10.86045 -10.51435 -10.46128 -10.26794 -10.03511 -9.88411 -9.60125 -9.56423 -8.91217 -8.77586 -7.24197 -5.77322 -3.13015 2.37269 2.43143 3.22378 3.38893 3.42574 3.47755 3.50002 4.08025 4.16589 4.39370 4.45173 4.53375 4.55691 4.59658 4.65231 4.72643 4.77023 4.96928 5.08277 5.14413 5.24170 5.25894 5.30141 5.30978 5.38825 5.42429 5.54302 5.63019 5.68884 5.73430 5.82432 5.88197 5.95475 6.04263 6.07693 6.25232 6.38043 6.44557 6.48577 6.54942 6.60736 6.67521 7.40713 7.97960 8.01047 8.41583 9.20374 9.92925 10.11943 11.41026 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.022294 B = 0.003563 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.646098 B = 7856.070463 C = 8548.018054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.094 0.906 4 C 0.097 3.903 5 N -0.619 5.619 6 C 0.541 3.459 7 O -0.515 6.515 8 C 0.043 3.957 9 H 0.092 0.908 10 C 0.036 3.964 11 O -0.373 6.373 12 C 0.020 3.980 13 C 0.023 3.977 14 O -0.351 6.351 15 C 0.118 3.882 16 C -0.080 4.080 17 C -0.134 4.134 18 C 0.173 3.827 19 N -0.755 5.755 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.007 3.993 23 N -0.934 5.934 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.032 0.968 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 -3.029 -23.335 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.112 0.888 4 C -0.025 4.025 5 N -0.355 5.355 6 C 0.327 3.673 7 O -0.389 6.389 8 C -0.018 4.018 9 H 0.109 0.891 10 C -0.041 4.041 11 O -0.291 6.291 12 C -0.057 4.057 13 C -0.054 4.054 14 O -0.269 6.269 15 C -0.004 4.004 16 C -0.081 4.081 17 C -0.191 4.191 18 C 0.046 3.954 19 N -0.401 5.401 20 C -0.374 4.374 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.582 5.582 24 Si 0.710 3.290 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.203 1.203 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.689 -3.557 -23.000 27.522 hybrid contribution -0.128 -1.284 0.222 1.310 sum -14.817 -4.842 -22.779 27.602 Atomic orbital electron populations 1.21970 0.94435 1.01789 1.02120 1.22128 0.96308 0.99783 0.93366 0.88787 1.22732 1.01057 0.81664 0.97071 1.48967 1.63201 1.04949 1.18356 1.19400 0.79709 0.82643 0.85531 1.90762 1.50930 1.30863 1.66359 1.22500 0.97091 0.87510 0.94748 0.89079 1.23231 0.90124 1.03920 0.86846 1.88122 1.74955 1.30013 1.36008 1.23329 0.96859 0.85187 1.00316 1.23352 0.92290 1.03633 0.86111 1.88244 1.75142 1.27382 1.36089 1.22542 0.97745 0.98773 0.81291 1.21785 0.96278 0.95208 0.94815 1.21899 0.97009 1.00980 0.99252 1.20692 0.93572 0.92667 0.88493 1.42742 1.57264 1.09949 1.30115 1.19027 1.18710 0.96605 1.03060 0.89188 1.24648 0.99301 0.97499 0.97479 1.69693 1.35846 1.35793 1.16838 0.86628 0.78255 0.86898 0.77208 1.20926 1.21667 1.20329 0.91496 0.92791 0.92541 0.90372 0.90238 0.91311 0.86741 0.91744 0.87347 0.87116 0.91812 0.89859 0.90006 0.92195 0.91902 0.93096 0.95220 0.95006 0.80536 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 7.82 37.16 0.29 -0.96 16 2 C -0.10 -0.96 3.31 -89.22 -0.30 -1.26 16 3 H 0.09 0.87 7.71 -51.93 -0.40 0.47 16 4 C 0.10 0.90 6.22 -2.25 -0.01 0.89 16 5 N -0.62 -7.94 3.33 -169.07 -0.56 -8.51 16 6 C 0.54 7.86 7.23 -10.99 -0.08 7.78 16 7 O -0.51 -9.92 16.83 -14.12 -0.24 -10.16 16 8 C 0.04 0.48 2.50 -27.81 -0.07 0.41 16 9 H 0.09 0.85 7.98 -51.93 -0.41 0.43 16 10 C 0.04 0.34 6.15 37.23 0.23 0.57 16 11 O -0.37 -3.46 10.85 -48.76 -0.53 -3.99 16 12 C 0.02 0.14 7.05 37.23 0.26 0.40 16 13 C 0.02 0.18 7.05 37.23 0.26 0.44 16 14 O -0.35 -4.38 10.05 -62.42 -0.63 -5.01 16 15 C 0.12 1.80 5.52 -2.41 -0.01 1.79 16 16 C -0.08 -1.10 0.73 -153.11 -0.11 -1.21 16 17 C -0.13 -1.89 7.08 37.16 0.26 -1.62 16 18 C 0.17 3.06 4.85 -4.04 -0.02 3.04 16 19 N -0.75 -17.24 4.93 -59.91 -0.30 -17.54 16 20 C -0.24 -6.79 10.47 -15.06 -0.16 -6.95 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -29.34 13.97 55.49 0.78 -28.57 16 24 Si 0.88 22.40 27.74 -169.99 -4.71 17.69 16 25 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 28 H 0.07 0.60 6.89 -51.93 -0.36 0.25 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.50 6.35 -51.93 -0.33 0.17 16 31 H 0.08 0.55 5.26 -51.93 -0.27 0.27 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.11 0.89 5.66 -51.93 -0.29 0.60 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 1.35 7.86 -51.93 -0.41 0.94 16 40 H 0.08 1.43 7.65 -51.93 -0.40 1.03 16 41 H 0.06 1.00 7.01 -51.93 -0.36 0.63 16 42 H 0.06 0.83 6.98 -51.93 -0.36 0.46 16 43 H 0.05 0.64 6.61 -51.93 -0.34 0.30 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.36 8.24 4.14 -40.82 -0.17 8.07 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -35.18 359.67 -7.83 -43.01 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.51 Total: 4.23 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 0.45 Total: 3.43 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.08 Total: -54.61 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -1.39 Total: -19.16 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.18 -7.83 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180656095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.038 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds