Wall clock time and date at job start Fri Apr 10 2020 18:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.30036 * 2 1 4 4 C 1.54384 * 110.34049 * 237.71572 * 2 1 3 5 5 N 1.48436 * 104.65400 * 264.99315 * 4 2 1 6 6 C 1.34777 * 127.98166 * 140.36498 * 5 4 2 7 7 O 1.21285 * 119.99566 * 174.85732 * 6 5 4 8 8 C 1.50695 * 120.00185 * 354.85724 * 6 5 4 9 9 H 1.09005 * 109.52046 * 50.27180 * 8 6 5 10 10 C 1.53141 * 109.52601 * 290.14205 * 8 6 5 11 11 O 1.43073 * 109.14845 * 184.78422 * 10 8 6 12 12 C 1.43077 * 113.59429 * 57.95753 * 11 10 8 13 13 C 1.53144 * 109.14393 * 302.03908 * 12 11 10 14 14 O 1.43075 * 109.52718 * 170.40103 * 8 6 5 15 15 C 1.48146 * 104.18069 * 320.44594 * 5 4 2 16 16 C 1.54280 * 110.34279 * 122.17528 * 2 1 3 17 17 C 1.52995 * 110.34383 * 0.02562 * 16 2 1 18 18 C 1.53001 * 110.34296 * 237.73917 * 16 2 1 19 19 N 1.46502 * 109.47133 * 183.00940 * 18 16 2 20 20 C 1.36938 * 120.00093 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99833 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.00330 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00487 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99764 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47074 * 89.99910 * 24 22 20 26 26 H 1.48498 * 109.47052 * 210.00307 * 24 22 20 27 27 H 1.48501 * 109.46925 * 330.00219 * 24 22 20 28 28 H 1.09004 * 109.47097 * 297.82277 * 1 2 3 29 29 H 1.08997 * 109.47239 * 57.82435 * 1 2 3 30 30 H 1.09000 * 109.47098 * 177.82650 * 1 2 3 31 31 H 1.08998 * 110.41343 * 23.77687 * 4 2 1 32 32 H 1.09008 * 110.40624 * 146.20979 * 4 2 1 33 33 H 1.09000 * 109.52146 * 304.68776 * 10 8 6 34 34 H 1.09000 * 109.52408 * 64.87988 * 10 8 6 35 35 H 1.08995 * 109.52613 * 61.94337 * 12 11 10 36 36 H 1.08999 * 109.52239 * 182.08020 * 12 11 10 37 37 H 1.09006 * 109.52175 * 175.21455 * 13 12 11 38 38 H 1.08997 * 109.52931 * 295.34878 * 13 12 11 39 39 H 1.09000 * 110.40758 * 280.73102 * 15 5 4 40 40 H 1.08994 * 110.41163 * 158.40891 * 15 5 4 41 41 H 1.09006 * 109.47225 * 176.98900 * 17 16 2 42 42 H 1.09003 * 109.47191 * 296.98943 * 17 16 2 43 43 H 1.08995 * 109.47449 * 56.99164 * 17 16 2 44 44 H 1.08994 * 109.47628 * 303.01062 * 18 16 2 45 45 H 1.09005 * 109.46733 * 63.01301 * 18 16 2 46 46 H 0.96998 * 119.99903 * 0.02562 * 19 18 16 47 47 H 0.97001 * 120.00457 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7732 -1.2238 5 7 2.3147 -2.1474 -0.7205 6 6 2.0785 -3.3161 -1.3489 7 8 2.4239 -4.3602 -0.8375 8 6 1.3854 -3.3255 -2.6870 9 1 1.8761 -2.6189 -3.3564 10 6 -0.0817 -2.9250 -2.5063 11 8 -0.7587 -3.0443 -3.7611 12 6 -0.6968 -4.3589 -4.3224 13 6 0.7703 -4.7593 -4.5031 14 8 1.4486 -4.6397 -3.2491 15 6 2.8802 -1.9416 0.6332 16 6 2.0663 -0.7703 1.2244 17 6 0.9062 -1.3020 2.0683 18 6 2.9692 0.1327 2.0672 19 7 3.5245 -0.6369 3.1834 20 6 4.3670 -0.0338 4.0788 21 1 4.6224 1.0090 3.9619 22 6 4.8936 -0.7630 5.1360 23 7 5.7037 -0.1835 5.9963 24 14 4.4523 -2.5670 5.3377 25 1 5.4328 -3.4020 4.5983 26 1 4.4831 -2.9259 6.7783 27 1 3.0903 -2.8069 4.7968 28 1 -0.3633 0.4797 0.9089 29 1 -0.3633 0.5472 -0.8698 30 1 -0.3633 -1.0269 -0.0390 31 1 1.3223 -0.7889 -2.0198 32 1 2.9949 -0.3255 -1.5790 33 1 -0.5514 -3.5826 -1.7749 34 1 -0.1375 -1.8933 -2.1589 35 1 -1.1872 -5.0647 -3.6521 36 1 -1.1991 -4.3659 -5.2897 37 1 0.8261 -5.7910 -4.8505 38 1 1.2397 -4.1024 -5.2354 39 1 3.9354 -1.6764 0.5680 40 1 2.7511 -2.8381 1.2394 41 1 1.2997 -1.8882 2.8988 42 1 0.3262 -0.4649 2.4571 43 1 0.2661 -1.9316 1.4504 44 1 3.7818 0.5133 1.4486 45 1 2.3866 0.9679 2.4560 46 1 3.2954 -1.5736 3.2881 47 1 6.0714 -0.6930 6.7354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180656095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:07 Heat of formation + Delta-G solvation = -122.395052 kcal Electronic energy + Delta-G solvation = -27882.772568 eV Core-core repulsion = 24065.578099 eV Total energy + Delta-G solvation = -3817.194468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93068 -40.77391 -39.33060 -37.12827 -36.66009 -34.72987 -33.33518 -32.91422 -31.46413 -29.60464 -28.51126 -27.32586 -26.67551 -25.91111 -24.64659 -22.89183 -22.31186 -20.77764 -20.21813 -19.46345 -18.52387 -17.84796 -17.71209 -17.27740 -16.84044 -16.60559 -16.55969 -16.29651 -15.67548 -15.54173 -15.25945 -15.08342 -14.76421 -14.61874 -14.53220 -14.19715 -13.90801 -13.65380 -13.55143 -13.24440 -13.16082 -12.95124 -12.75828 -12.63920 -12.50098 -12.37550 -12.12023 -11.95518 -11.87528 -11.64771 -11.52688 -11.46705 -11.22680 -11.00619 -10.92394 -10.33896 -9.86261 -9.28266 -8.04413 -5.35494 1.31393 1.33337 1.35919 1.41254 1.46552 2.44482 2.58696 2.73332 3.23432 3.28202 3.36334 3.47152 3.53982 3.73578 3.76481 3.91769 3.93295 4.08621 4.16807 4.19995 4.23839 4.27846 4.38091 4.45240 4.52944 4.61531 4.68143 4.72691 4.76758 4.79627 4.82217 4.87684 5.00215 5.01366 5.05852 5.11655 5.25937 5.35348 5.41336 5.59334 5.76615 5.81487 5.83904 6.20562 6.39354 6.92756 7.07466 7.85231 8.01258 9.17375 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.022294 B = 0.003563 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.646098 B = 7856.070463 C = 8548.018054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.109 0.891 4 C 0.096 3.904 5 N -0.612 5.612 6 C 0.535 3.465 7 O -0.575 6.575 8 C 0.050 3.950 9 H 0.116 0.884 10 C 0.043 3.957 11 O -0.377 6.377 12 C 0.017 3.983 13 C 0.017 3.983 14 O -0.388 6.388 15 C 0.117 3.883 16 C -0.070 4.070 17 C -0.131 4.131 18 C 0.170 3.830 19 N -0.759 5.759 20 C -0.224 4.224 21 H 0.065 0.935 22 C -0.059 4.059 23 N -0.982 5.982 24 Si 0.940 3.060 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.257 1.257 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.135 0.865 35 H 0.059 0.941 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.028 0.972 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.037 0.963 46 H 0.362 0.638 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.436 -2.445 -26.516 31.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.127 0.873 4 C -0.025 4.025 5 N -0.346 5.346 6 C 0.324 3.676 7 O -0.454 6.454 8 C -0.012 4.012 9 H 0.134 0.866 10 C -0.034 4.034 11 O -0.296 6.296 12 C -0.059 4.059 13 C -0.058 4.058 14 O -0.307 6.307 15 C -0.006 4.006 16 C -0.072 4.072 17 C -0.188 4.188 18 C 0.044 3.956 19 N -0.404 5.404 20 C -0.355 4.355 21 H 0.083 0.917 22 C -0.250 4.250 23 N -0.633 5.633 24 Si 0.768 3.232 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.182 1.182 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.078 0.922 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.195 0.805 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.179 -2.932 -26.251 31.509 hybrid contribution 0.635 -1.396 1.114 1.895 sum -16.544 -4.328 -25.137 30.403 Atomic orbital electron populations 1.21974 0.92768 1.02060 1.03372 1.22148 0.97606 0.99895 0.91114 0.87259 1.23032 1.02869 0.79116 0.97502 1.48987 1.62068 1.06261 1.17304 1.20143 0.78991 0.82009 0.86494 1.90727 1.53535 1.33062 1.68080 1.22519 0.97976 0.87840 0.92830 0.86630 1.23188 0.88663 1.04661 0.86896 1.88119 1.74690 1.31071 1.35683 1.23518 0.96614 0.84262 1.01548 1.23633 0.92449 1.05141 0.84622 1.88199 1.76186 1.28203 1.38119 1.22349 0.97495 0.98036 0.82715 1.21651 0.95258 0.94450 0.95813 1.21874 0.97193 1.01203 0.98493 1.20909 0.94229 0.93092 0.87416 1.42816 1.56641 1.10312 1.30654 1.19064 1.17859 0.95523 1.03076 0.91732 1.25339 1.00192 1.01642 0.97868 1.69846 1.38048 1.37484 1.17962 0.85641 0.78862 0.81900 0.76783 1.21134 1.22003 1.18231 0.91867 0.89904 0.92874 0.87029 0.88819 0.92710 0.84703 0.92249 0.84357 0.85592 0.90342 0.91328 0.92975 0.95312 0.90736 0.91614 0.94813 0.94478 0.80466 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.82 71.98 0.56 -1.28 16 2 C -0.09 -1.44 3.31 -9.89 -0.03 -1.48 16 3 H 0.11 1.55 7.71 -2.38 -0.02 1.53 16 4 C 0.10 1.41 6.22 86.48 0.54 1.95 16 5 N -0.61 -14.76 3.33 -807.20 -2.69 -17.45 16 6 C 0.54 15.15 7.23 87.66 0.63 15.79 16 7 O -0.58 -22.80 16.83 15.77 0.27 -22.54 16 8 C 0.05 1.00 2.50 29.89 0.07 1.08 16 9 H 0.12 1.73 7.98 -2.38 -0.02 1.71 16 10 C 0.04 0.69 6.15 72.03 0.44 1.13 16 11 O -0.38 -5.69 10.85 -136.04 -1.48 -7.17 16 12 C 0.02 0.19 7.05 72.03 0.51 0.70 16 13 C 0.02 0.23 7.05 72.03 0.51 0.74 16 14 O -0.39 -9.21 10.05 -122.98 -1.24 -10.45 16 15 C 0.12 3.53 5.52 86.54 0.48 4.01 16 16 C -0.07 -1.84 0.73 -51.28 -0.04 -1.88 16 17 C -0.13 -3.49 7.08 71.98 0.51 -2.98 16 18 C 0.17 5.82 4.85 86.38 0.42 6.24 16 19 N -0.76 -34.70 4.93 -343.45 -1.69 -36.39 16 20 C -0.22 -12.66 10.47 84.03 0.88 -11.78 16 21 H 0.06 3.93 8.06 -2.91 -0.02 3.90 16 22 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 23 N -0.98 -63.51 13.97 21.65 0.30 -63.21 16 24 Si 0.94 47.29 27.74 68.60 1.90 49.19 16 25 H -0.28 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 27 H -0.26 -11.94 6.52 99.48 0.65 -11.29 16 28 H 0.06 0.89 6.89 -2.39 -0.02 0.87 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.73 6.35 -2.39 -0.02 0.72 16 31 H 0.11 0.95 5.26 -2.39 -0.01 0.94 16 32 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.14 1.50 5.66 -2.39 -0.01 1.49 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.14 0.72 8.14 -2.39 -0.02 0.71 16 37 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 2.25 7.86 -2.39 -0.02 2.23 16 40 H 0.05 1.88 7.65 -2.39 -0.02 1.86 16 41 H 0.03 0.93 7.01 -2.38 -0.02 0.92 16 42 H 0.07 1.81 6.98 -2.39 -0.02 1.79 16 43 H 0.06 1.56 6.61 -2.39 -0.02 1.54 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.36 16.53 4.14 -92.71 -0.38 16.15 16 47 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -80.31 359.67 1.86 -78.45 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.53 Total: 20.36 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 5.95 Total: 9.20 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.08 Total: -117.05 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -2.45 Total: -40.15 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.90 Total: 49.19 kcal Total: -80.31 1.86 -78.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180656095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.945 kcal (2) G-P(sol) polarization free energy of solvation -80.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds