Wall clock time and date at job start Fri Apr 10 2020 18:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00133 * 2 1 4 4 H 1.07996 * 120.00228 * 203.37628 * 3 2 1 5 5 C 1.38813 * 119.99939 * 23.37979 * 3 2 1 6 6 N 1.31618 * 120.00408 * 14.35799 * 5 3 2 7 7 Si 1.86796 * 119.99940 * 194.36171 * 5 3 2 8 8 H 1.48500 * 109.47424 * 89.99962 * 7 5 3 9 9 H 1.48508 * 109.47326 * 209.99839 * 7 5 3 10 10 H 1.48496 * 109.47254 * 329.99571 * 7 5 3 11 11 C 1.46497 * 119.99957 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64350 * 180.70327 * 11 2 1 13 13 C 1.55155 * 110.72236 * 57.55736 * 11 2 1 14 14 C 1.54904 * 101.58573 * 205.96049 * 13 11 2 15 15 N 1.47425 * 104.83471 * 37.00675 * 14 13 11 16 16 C 1.34777 * 125.65046 * 155.91482 * 15 14 13 17 17 O 1.21283 * 119.99908 * 179.97438 * 16 15 14 18 18 C 1.50693 * 120.00079 * 359.97438 * 16 15 14 19 19 O 1.42901 * 109.47461 * 179.97438 * 18 16 15 20 20 C 1.42895 * 114.00309 * 179.97438 * 19 18 16 21 21 C 1.52996 * 109.47205 * 180.02562 * 20 19 18 22 22 H 1.09000 * 110.27395 * 55.63731 * 21 20 19 23 23 C 1.54949 * 110.31034 * 177.83466 * 21 20 19 24 24 C 1.55305 * 100.94238 * 155.35861 * 23 21 20 25 25 C 1.54383 * 102.25183 * 325.86783 * 24 23 21 26 26 O 1.43232 * 107.59208 * 21.35306 * 25 24 23 27 27 C 1.47028 * 108.70015 * 335.87786 * 15 14 13 28 28 H 1.09005 * 109.47468 * 275.18649 * 1 2 3 29 29 H 1.09002 * 109.47416 * 35.18055 * 1 2 3 30 30 H 1.08992 * 109.47615 * 155.18101 * 1 2 3 31 31 H 0.96998 * 120.00975 * 180.02562 * 6 5 3 32 32 H 1.09003 * 111.00304 * 324.03642 * 13 11 2 33 33 H 1.09003 * 111.00441 * 87.84114 * 13 11 2 34 34 H 1.09001 * 110.37042 * 155.84842 * 14 13 11 35 35 H 1.09001 * 110.36534 * 278.06489 * 14 13 11 36 36 H 1.09006 * 109.47017 * 299.99909 * 18 16 15 37 37 H 1.08998 * 109.47015 * 59.99174 * 18 16 15 38 38 H 1.09001 * 109.47198 * 300.00019 * 20 19 18 39 39 H 1.08997 * 109.47105 * 59.99996 * 20 19 18 40 40 H 1.09004 * 111.12013 * 273.27842 * 23 21 20 41 41 H 1.08997 * 111.12433 * 37.43845 * 23 21 20 42 42 H 1.09001 * 110.84607 * 207.67854 * 24 23 21 43 43 H 1.08996 * 110.84617 * 84.05291 * 24 23 21 44 44 H 1.09007 * 109.82585 * 261.84432 * 25 24 23 45 45 H 1.08998 * 109.90768 * 140.91558 * 25 24 23 46 46 H 1.09004 * 109.87805 * 241.63980 * 27 15 14 47 47 H 1.08997 * 109.88156 * 120.47650 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1632 1.2243 -0.3711 5 6 1.5411 2.3387 0.4770 6 7 0.4327 2.2545 1.1818 7 14 2.2953 4.0097 0.1188 8 1 1.7406 4.5409 -1.1522 9 1 1.9759 4.9449 1.2273 10 1 3.7687 3.8718 -0.0035 11 6 2.1975 -1.2687 -0.0006 12 1 3.2728 -1.0916 0.0120 13 6 1.7978 -2.1328 -1.2256 14 6 2.0944 -3.5624 -0.7081 15 7 1.7097 -3.5361 0.7148 16 6 1.3573 -4.6071 1.4532 17 8 1.0588 -4.4673 2.6204 18 6 1.3341 -5.9783 0.8286 19 8 0.9326 -6.9403 1.8061 20 6 0.8771 -8.2807 1.3139 21 6 0.4380 -9.2195 2.4393 22 1 -0.5122 -8.8882 2.8583 23 6 0.3187 -10.6718 1.9124 24 6 0.5201 -11.4787 3.2240 25 6 1.5266 -10.6002 3.9978 26 8 1.4432 -9.2737 3.4641 27 6 1.7749 -2.1480 1.1952 28 1 -0.3634 0.0929 1.0235 29 1 -0.3634 0.8399 -0.5921 30 1 -0.3634 -0.9326 -0.4313 31 1 0.0072 3.0600 1.5148 32 1 0.7398 -2.0137 -1.4593 33 1 2.4161 -1.8937 -2.0909 34 1 1.4949 -4.2941 -1.2497 35 1 3.1552 -3.7908 -0.8117 36 1 0.6283 -5.9873 -0.0020 37 1 2.3299 -6.2273 0.4618 38 1 0.1613 -8.3373 0.4938 39 1 1.8631 -8.5776 0.9565 40 1 -0.6675 -10.8551 1.4858 41 1 1.1044 -10.8934 1.1902 42 1 0.9437 -12.4608 3.0140 43 1 -0.4178 -11.5685 3.7721 44 1 2.5360 -10.9896 3.8645 45 1 1.2716 -10.5892 5.0575 46 1 2.5121 -2.0665 1.9940 47 1 0.7960 -1.8349 1.5580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194502191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:21 Heat of formation + Delta-G solvation = -91.685731 kcal Electronic energy + Delta-G solvation = -26080.144810 eV Core-core repulsion = 22264.281998 eV Total energy + Delta-G solvation = -3815.862812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.95626 -39.62709 -37.90091 -36.86806 -34.76642 -32.55067 -31.76270 -31.16630 -29.80823 -28.76924 -27.07056 -26.03061 -25.36457 -23.29403 -22.35227 -22.02977 -21.59095 -19.37888 -19.03492 -17.53788 -17.12248 -17.05182 -16.53011 -16.24210 -15.94354 -15.55552 -15.31748 -14.84382 -14.51117 -14.15921 -13.65595 -13.59218 -13.34084 -13.27581 -12.77033 -12.58470 -12.28497 -12.16189 -12.13972 -11.96793 -11.78141 -11.61032 -11.56769 -11.50150 -11.20468 -10.92206 -10.80846 -10.56259 -10.47631 -10.27777 -9.89101 -9.87534 -9.82581 -9.75466 -9.47979 -8.57923 -8.27902 -6.81109 -5.75973 -3.24500 2.80349 2.86567 3.37276 3.43391 3.45295 3.46764 3.75811 4.05558 4.42921 4.46204 4.51714 4.65853 4.77903 4.88416 4.89716 4.97858 5.02449 5.07930 5.11359 5.16889 5.25761 5.28293 5.31978 5.37565 5.46771 5.50499 5.57065 5.59670 5.73711 5.78744 5.89460 6.00460 6.34723 6.37444 6.52901 6.64761 6.74940 6.81525 6.87433 6.97269 7.31608 7.71548 7.77839 7.81985 8.34750 8.46072 9.18079 9.80731 10.30060 11.28106 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.040116 B = 0.002143 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.811062 B =13065.142037 C =13310.033044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.099 3.901 15 N -0.614 5.614 16 C 0.523 3.477 17 O -0.522 6.522 18 C 0.050 3.950 19 O -0.354 6.354 20 C 0.062 3.938 21 C 0.084 3.916 22 H 0.081 0.919 23 C -0.150 4.150 24 C -0.155 4.155 25 C 0.047 3.953 26 O -0.367 6.367 27 C 0.089 3.911 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.003 0.997 31 H 0.254 0.746 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -26.725 -4.396 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.024 4.024 15 N -0.351 5.351 16 C 0.310 3.690 17 O -0.397 6.397 18 C -0.030 4.030 19 O -0.272 6.272 20 C -0.015 4.015 21 C 0.026 3.974 22 H 0.099 0.901 23 C -0.187 4.187 24 C -0.193 4.193 25 C -0.030 4.030 26 O -0.287 6.287 27 C -0.035 4.035 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.597 -26.310 -3.353 26.529 hybrid contribution 0.247 0.619 -0.481 0.822 sum 0.845 -25.691 -3.834 25.989 Atomic orbital electron populations 1.20800 0.82516 0.95583 0.99715 1.43921 1.01860 0.99910 1.84811 1.19213 0.98909 0.85207 1.35894 0.91147 1.25082 0.98038 0.98730 0.97599 1.70075 1.20417 1.27497 1.36564 0.86219 0.78722 0.83935 0.77410 1.21451 1.21739 1.20405 1.21360 0.96441 0.85905 0.90077 0.90284 1.23358 1.02825 0.92996 1.00152 1.22353 0.99606 0.99233 0.81248 1.48496 1.67052 1.07751 1.11753 1.19783 0.78047 0.84756 0.86441 1.90740 1.47372 1.85422 1.16182 1.22181 1.00746 0.88269 0.91764 1.88085 1.89088 1.14879 1.35110 1.22708 1.00725 0.82578 0.95486 1.22986 0.92639 0.93703 0.88077 0.90081 1.23254 1.03525 0.93766 0.98173 1.23118 1.00432 0.99685 0.96030 1.23150 0.99149 0.82758 0.97955 1.88582 1.57943 1.28387 1.53738 1.22903 1.02576 0.78643 0.99373 0.94844 0.93987 0.97882 0.93571 0.90491 0.90353 0.91508 0.91503 0.90570 0.90523 0.91828 0.92451 0.89445 0.90020 0.89850 0.90310 0.91362 0.91330 0.92092 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.64 59.85 0.46 4.30 16 2 N -0.58 -14.24 2.93 -171.40 -0.50 -14.74 16 3 C -0.26 -7.04 9.59 -15.06 -0.14 -7.18 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 6 N -0.90 -26.25 10.81 55.49 0.60 -25.65 16 7 Si 0.91 21.61 29.58 -169.99 -5.03 16.58 16 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.17 3.39 3.43 -66.10 -0.23 3.16 16 12 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 13 C -0.15 -2.34 6.60 -24.59 -0.16 -2.50 16 14 C 0.10 1.25 6.69 -2.53 -0.02 1.24 16 15 N -0.61 -10.26 3.33 -170.52 -0.57 -10.82 16 16 C 0.52 9.23 7.93 -10.99 -0.09 9.14 16 17 O -0.52 -11.83 16.83 -14.35 -0.24 -12.07 16 18 C 0.05 0.64 5.42 36.00 0.20 0.84 16 19 O -0.35 -5.21 9.87 -58.41 -0.58 -5.79 16 20 C 0.06 0.61 5.65 37.16 0.21 0.82 16 21 C 0.08 0.82 3.73 -25.70 -0.10 0.72 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 23 C -0.15 -0.89 6.57 -24.48 -0.16 -1.06 16 24 C -0.16 -0.88 7.02 -24.78 -0.17 -1.05 16 25 C 0.05 0.38 7.79 37.88 0.30 0.68 16 26 O -0.37 -4.57 11.03 -36.86 -0.41 -4.97 16 27 C 0.09 1.78 6.50 -3.06 -0.02 1.76 16 28 H 0.03 0.90 7.25 -51.93 -0.38 0.52 16 29 H 0.04 1.09 7.41 -51.93 -0.38 0.70 16 30 H 0.00 0.06 6.30 -51.93 -0.33 -0.27 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.08 1.26 6.30 -51.93 -0.33 0.93 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.07 1.68 6.97 -51.93 -0.36 1.32 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -34.98 374.74 -9.12 -44.10 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -8.02 Total: -3.20 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -0.02 Total: 10.91 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.47 Total: -51.21 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -1.22 Total: -22.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.98 -9.12 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194502191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.584 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds