Wall clock time and date at job start Fri Apr 10 2020 18:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00203 * 2 1 4 4 H 1.07994 * 120.00372 * 203.43000 * 3 2 1 5 5 C 1.38819 * 119.99699 * 23.43161 * 3 2 1 6 6 N 1.31621 * 120.00091 * 14.45339 * 5 3 2 7 7 Si 1.86801 * 119.99788 * 194.45455 * 5 3 2 8 8 H 1.48498 * 109.47090 * 89.99669 * 7 5 3 9 9 H 1.48498 * 109.46774 * 209.99987 * 7 5 3 10 10 H 1.48498 * 109.46891 * 329.99763 * 7 5 3 11 11 C 1.46499 * 120.00020 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.64548 * 178.31159 * 11 2 1 13 13 C 1.55448 * 110.85972 * 55.08397 * 11 2 1 14 14 C 1.54913 * 101.45238 * 206.07517 * 13 11 2 15 15 N 1.47424 * 104.92866 * 37.00785 * 14 13 11 16 16 C 1.34767 * 125.64675 * 155.83567 * 15 14 13 17 17 O 1.21284 * 119.99992 * 179.97438 * 16 15 14 18 18 C 1.50695 * 120.00383 * 359.97438 * 16 15 14 19 19 O 1.42899 * 109.47617 * 179.97438 * 18 16 15 20 20 C 1.42899 * 114.00380 * 179.97438 * 19 18 16 21 21 C 1.52996 * 109.47176 * 180.02562 * 20 19 18 22 22 H 1.08994 * 110.33354 * 305.70467 * 21 20 19 23 23 C 1.54474 * 110.37270 * 183.44970 * 21 20 19 24 24 C 1.54508 * 104.06680 * 217.19025 * 23 21 20 25 25 C 1.54482 * 104.06092 * 0.02562 * 24 23 21 26 26 O 1.44427 * 110.37309 * 67.95430 * 21 20 19 27 27 C 1.47030 * 108.70321 * 335.81710 * 15 14 13 28 28 H 1.09006 * 109.46959 * 275.18628 * 1 2 3 29 29 H 1.09001 * 109.47053 * 35.18607 * 1 2 3 30 30 H 1.09002 * 109.47338 * 155.18472 * 1 2 3 31 31 H 0.96993 * 119.99603 * 180.02562 * 6 5 3 32 32 H 1.09007 * 111.11530 * 88.02334 * 13 11 2 33 33 H 1.08996 * 111.01363 * 324.08899 * 13 11 2 34 34 H 1.09004 * 110.36723 * 278.11457 * 14 13 11 35 35 H 1.08999 * 110.36583 * 155.90118 * 14 13 11 36 36 H 1.08997 * 109.47316 * 300.00329 * 18 16 15 37 37 H 1.09004 * 109.47209 * 60.00215 * 18 16 15 38 38 H 1.09001 * 109.47161 * 300.00078 * 20 19 18 39 39 H 1.09002 * 109.46665 * 60.00303 * 20 19 18 40 40 H 1.08997 * 110.51645 * 335.83934 * 23 21 20 41 41 H 1.09002 * 110.51121 * 98.41212 * 23 21 20 42 42 H 1.08995 * 110.51330 * 118.64427 * 24 23 21 43 43 H 1.08995 * 110.51302 * 241.35813 * 24 23 21 44 44 H 1.08996 * 110.37268 * 142.81314 * 25 24 23 45 45 H 1.08999 * 110.37088 * 265.03499 * 25 24 23 46 46 H 1.08998 * 109.88003 * 120.47492 * 27 15 14 47 47 H 1.09006 * 109.88052 * 241.48984 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1629 1.2245 -0.3719 5 6 1.5415 2.3385 0.4781 6 7 0.4346 2.2537 1.1852 7 14 2.2939 4.0099 0.1178 8 1 1.7363 4.5403 -1.1522 9 1 1.9764 4.9450 1.2267 10 1 3.7672 3.8727 -0.0076 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 -0.0305 13 6 1.7542 -2.1633 -1.1921 14 6 2.0705 -3.5789 -0.6482 15 7 1.7365 -3.5180 0.7864 16 6 1.4107 -4.5706 1.5624 17 8 1.1539 -4.4025 2.7357 18 6 1.3656 -5.9564 0.9722 19 8 0.9991 -6.8943 1.9862 20 6 0.9264 -8.2461 1.5287 21 6 0.5276 -9.1572 2.6913 22 1 1.2067 -9.0174 3.5323 23 6 0.5267 -10.6348 2.2408 24 6 -0.6756 -11.2544 2.9878 25 6 -1.2592 -10.0777 3.8008 26 8 -0.8335 -8.8912 3.0946 27 6 1.8181 -2.1187 1.2305 28 1 -0.3633 0.0929 1.0235 29 1 -0.3633 0.8399 -0.5922 30 1 -0.3634 -0.9328 -0.4313 31 1 0.0094 3.0591 1.5189 32 1 2.3413 -1.9475 -2.0848 33 1 0.6885 -2.0500 -1.3906 34 1 3.1274 -3.8094 -0.7822 35 1 1.4538 -4.3245 -1.1500 36 1 0.6308 -5.9850 0.1677 37 1 2.3478 -6.2150 0.5766 38 1 0.1818 -8.3220 0.7362 39 1 1.8992 -8.5523 1.1439 40 1 0.3838 -10.7053 1.1625 41 1 1.4551 -11.1244 2.5348 42 1 -1.4128 -11.6311 2.2789 43 1 -0.3425 -12.0508 3.6532 44 1 -2.3473 -10.1360 3.8251 45 1 -0.8572 -10.0802 4.8140 46 1 0.8525 -1.7966 1.6201 47 1 2.5814 -2.0187 2.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194502197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:24 Heat of formation + Delta-G solvation = -91.357543 kcal Electronic energy + Delta-G solvation = -26095.741328 eV Core-core repulsion = 22279.892747 eV Total energy + Delta-G solvation = -3815.848581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.93930 -39.60492 -37.89747 -36.86863 -34.76521 -32.50043 -31.75526 -31.12268 -29.80012 -28.76763 -27.06420 -26.02307 -25.34230 -23.28135 -22.37217 -22.29374 -21.36834 -19.36896 -19.04059 -17.45478 -17.08973 -16.90918 -16.49449 -16.17875 -15.91862 -15.79115 -15.28490 -14.91558 -14.60930 -14.06335 -13.89381 -13.48799 -13.29855 -13.25645 -12.76153 -12.50064 -12.26394 -12.15895 -12.13480 -11.91133 -11.78635 -11.61111 -11.52673 -11.49824 -11.01013 -10.92790 -10.81167 -10.56065 -10.46210 -10.27698 -10.01822 -9.89356 -9.87791 -9.82038 -9.48305 -8.57794 -8.27856 -6.81079 -5.75822 -3.24364 2.79951 2.86347 3.37366 3.43442 3.45386 3.56392 3.74221 4.19452 4.42865 4.46674 4.52911 4.63374 4.80179 4.89373 4.93820 4.96373 5.02787 5.08288 5.11179 5.16158 5.27939 5.31006 5.32473 5.41391 5.48654 5.49886 5.58580 5.60066 5.65329 5.78407 5.89069 5.99544 6.34199 6.37472 6.52040 6.55820 6.65732 6.82024 6.87541 6.94841 7.31925 7.72163 7.77989 7.81969 8.34925 8.45829 9.18172 9.80840 10.30189 11.28243 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.002182 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.992419 B =12826.552593 C =13191.146172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.901 5.901 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.099 3.901 15 N -0.614 5.614 16 C 0.523 3.477 17 O -0.522 6.522 18 C 0.051 3.949 19 O -0.355 6.355 20 C 0.066 3.934 21 C 0.077 3.923 22 H 0.079 0.921 23 C -0.148 4.148 24 C -0.155 4.155 25 C 0.041 3.959 26 O -0.359 6.359 27 C 0.089 3.911 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.004 0.996 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -26.623 -3.458 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.305 5.305 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.545 5.545 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.024 4.024 15 N -0.350 5.350 16 C 0.310 3.690 17 O -0.398 6.398 18 C -0.029 4.029 19 O -0.273 6.273 20 C -0.010 4.010 21 C 0.019 3.981 22 H 0.097 0.903 23 C -0.186 4.186 24 C -0.192 4.192 25 C -0.036 4.036 26 O -0.278 6.278 27 C -0.035 4.035 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.907 -26.161 -2.523 26.299 hybrid contribution 0.465 0.603 -0.371 0.847 sum 1.372 -25.559 -2.895 25.759 Atomic orbital electron populations 1.20814 0.82500 0.95626 0.99737 1.43920 1.01872 0.99913 1.84779 1.19212 0.98939 0.85222 1.35891 0.91153 1.25085 0.98048 0.98728 0.97588 1.70080 1.20501 1.27502 1.36420 0.86219 0.78708 0.83946 0.77418 1.21446 1.21740 1.20410 1.21412 0.96415 0.85924 0.89999 0.90296 1.23395 1.02847 0.93115 0.99979 1.22352 0.99881 0.99282 0.80921 1.48501 1.68139 1.07803 1.10595 1.19780 0.77917 0.85003 0.86336 1.90738 1.47871 1.85141 1.16007 1.22182 1.00864 0.88535 0.91357 1.88076 1.90301 1.15123 1.33806 1.22610 1.00134 0.82316 0.95988 1.22984 0.85744 0.92623 0.96753 0.90308 1.22919 0.99355 0.94702 1.01635 1.22936 0.97774 0.98797 0.99728 1.23435 1.00592 0.84079 0.95539 1.89299 1.27050 1.37029 1.74386 1.22945 1.02523 0.78304 0.99773 0.94837 0.93991 0.97800 0.93569 0.90321 0.90401 0.91519 0.91486 0.90459 0.90571 0.92250 0.91742 0.90352 0.90049 0.90532 0.90397 0.89000 0.92167 0.90855 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 7.75 59.85 0.46 4.31 16 2 N -0.58 -14.25 2.93 -171.20 -0.50 -14.75 16 3 C -0.26 -7.06 9.59 -15.06 -0.14 -7.20 16 4 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 5 C 0.00 0.13 5.07 -17.43 -0.09 0.05 16 6 N -0.90 -26.28 10.82 55.49 0.60 -25.68 16 7 Si 0.91 21.62 29.58 -169.99 -5.03 16.60 16 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.17 3.39 3.44 -65.93 -0.23 3.17 16 12 H 0.08 1.52 7.93 -51.93 -0.41 1.10 16 13 C -0.15 -2.34 6.62 -24.42 -0.16 -2.50 16 14 C 0.10 1.25 6.68 -2.53 -0.02 1.23 16 15 N -0.61 -10.25 3.33 -170.51 -0.57 -10.82 16 16 C 0.52 9.22 7.93 -10.99 -0.09 9.14 16 17 O -0.52 -11.82 16.83 -14.36 -0.24 -12.07 16 18 C 0.05 0.64 5.42 36.00 0.20 0.84 16 19 O -0.36 -5.21 9.87 -57.52 -0.57 -5.78 16 20 C 0.07 0.66 5.54 37.16 0.21 0.87 16 21 C 0.08 0.76 3.57 -25.96 -0.09 0.66 16 22 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.15 -0.93 6.63 -25.17 -0.17 -1.10 16 24 C -0.15 -0.92 7.09 -25.16 -0.18 -1.10 16 25 C 0.04 0.34 7.63 37.94 0.29 0.63 16 26 O -0.36 -4.49 11.35 -35.63 -0.40 -4.90 16 27 C 0.09 1.77 6.51 -3.06 -0.02 1.75 16 28 H 0.03 0.91 7.25 -51.93 -0.38 0.53 16 29 H 0.04 1.09 7.41 -51.93 -0.38 0.70 16 30 H 0.00 0.08 6.15 -51.93 -0.32 -0.24 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.28 6.17 -51.93 -0.32 0.96 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.67 7.47 -51.93 -0.39 0.28 16 36 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.42 7.87 -51.93 -0.41 0.02 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 1.69 7.06 -51.93 -0.37 1.33 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -34.98 374.53 -9.10 -44.08 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -8.00 Total: -3.05 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -0.03 Total: 10.73 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.47 Total: -51.25 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.21 Total: -22.75 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.98 -9.10 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194502197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.280 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds