Wall clock time and date at job start Fri Apr 10 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00203 * 2 1 4 4 H 1.07994 * 120.00372 * 203.43000 * 3 2 1 5 5 C 1.38819 * 119.99699 * 23.43161 * 3 2 1 6 6 N 1.31621 * 120.00091 * 14.45339 * 5 3 2 7 7 Si 1.86801 * 119.99788 * 194.45455 * 5 3 2 8 8 H 1.48498 * 109.47090 * 89.99669 * 7 5 3 9 9 H 1.48498 * 109.46774 * 209.99987 * 7 5 3 10 10 H 1.48498 * 109.46891 * 329.99763 * 7 5 3 11 11 C 1.46499 * 120.00020 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.64548 * 178.31159 * 11 2 1 13 13 C 1.55448 * 110.85972 * 55.08397 * 11 2 1 14 14 C 1.54913 * 101.45238 * 206.07517 * 13 11 2 15 15 N 1.47424 * 104.92866 * 37.00785 * 14 13 11 16 16 C 1.34767 * 125.64675 * 155.83567 * 15 14 13 17 17 O 1.21284 * 119.99992 * 179.97438 * 16 15 14 18 18 C 1.50695 * 120.00383 * 359.97438 * 16 15 14 19 19 O 1.42899 * 109.47617 * 179.97438 * 18 16 15 20 20 C 1.42899 * 114.00380 * 179.97438 * 19 18 16 21 21 C 1.52996 * 109.47176 * 180.02562 * 20 19 18 22 22 H 1.08994 * 110.33354 * 305.70467 * 21 20 19 23 23 C 1.54474 * 110.37270 * 183.44970 * 21 20 19 24 24 C 1.54508 * 104.06680 * 217.19025 * 23 21 20 25 25 C 1.54482 * 104.06092 * 0.02562 * 24 23 21 26 26 O 1.44427 * 110.37309 * 67.95430 * 21 20 19 27 27 C 1.47030 * 108.70321 * 335.81710 * 15 14 13 28 28 H 1.09006 * 109.46959 * 275.18628 * 1 2 3 29 29 H 1.09001 * 109.47053 * 35.18607 * 1 2 3 30 30 H 1.09002 * 109.47338 * 155.18472 * 1 2 3 31 31 H 0.96993 * 119.99603 * 180.02562 * 6 5 3 32 32 H 1.09007 * 111.11530 * 88.02334 * 13 11 2 33 33 H 1.08996 * 111.01363 * 324.08899 * 13 11 2 34 34 H 1.09004 * 110.36723 * 278.11457 * 14 13 11 35 35 H 1.08999 * 110.36583 * 155.90118 * 14 13 11 36 36 H 1.08997 * 109.47316 * 300.00329 * 18 16 15 37 37 H 1.09004 * 109.47209 * 60.00215 * 18 16 15 38 38 H 1.09001 * 109.47161 * 300.00078 * 20 19 18 39 39 H 1.09002 * 109.46665 * 60.00303 * 20 19 18 40 40 H 1.08997 * 110.51645 * 335.83934 * 23 21 20 41 41 H 1.09002 * 110.51121 * 98.41212 * 23 21 20 42 42 H 1.08995 * 110.51330 * 118.64427 * 24 23 21 43 43 H 1.08995 * 110.51302 * 241.35813 * 24 23 21 44 44 H 1.08996 * 110.37268 * 142.81314 * 25 24 23 45 45 H 1.08999 * 110.37088 * 265.03499 * 25 24 23 46 46 H 1.08998 * 109.88003 * 120.47492 * 27 15 14 47 47 H 1.09006 * 109.88052 * 241.48984 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1629 1.2245 -0.3719 5 6 1.5415 2.3385 0.4781 6 7 0.4346 2.2537 1.1852 7 14 2.2939 4.0099 0.1178 8 1 1.7363 4.5403 -1.1522 9 1 1.9764 4.9450 1.2267 10 1 3.7672 3.8727 -0.0076 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 -0.0305 13 6 1.7542 -2.1633 -1.1921 14 6 2.0705 -3.5789 -0.6482 15 7 1.7365 -3.5180 0.7864 16 6 1.4107 -4.5706 1.5624 17 8 1.1539 -4.4025 2.7357 18 6 1.3656 -5.9564 0.9722 19 8 0.9991 -6.8943 1.9862 20 6 0.9264 -8.2461 1.5287 21 6 0.5276 -9.1572 2.6913 22 1 1.2067 -9.0174 3.5323 23 6 0.5267 -10.6348 2.2408 24 6 -0.6756 -11.2544 2.9878 25 6 -1.2592 -10.0777 3.8008 26 8 -0.8335 -8.8912 3.0946 27 6 1.8181 -2.1187 1.2305 28 1 -0.3633 0.0929 1.0235 29 1 -0.3633 0.8399 -0.5922 30 1 -0.3634 -0.9328 -0.4313 31 1 0.0094 3.0591 1.5189 32 1 2.3413 -1.9475 -2.0848 33 1 0.6885 -2.0500 -1.3906 34 1 3.1274 -3.8094 -0.7822 35 1 1.4538 -4.3245 -1.1500 36 1 0.6308 -5.9850 0.1677 37 1 2.3478 -6.2150 0.5766 38 1 0.1818 -8.3220 0.7362 39 1 1.8992 -8.5523 1.1439 40 1 0.3838 -10.7053 1.1625 41 1 1.4551 -11.1244 2.5348 42 1 -1.4128 -11.6311 2.2789 43 1 -0.3425 -12.0508 3.6532 44 1 -2.3473 -10.1360 3.8251 45 1 -0.8572 -10.0802 4.8140 46 1 0.8525 -1.7966 1.6201 47 1 2.5814 -2.0187 2.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194502197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:23 Heat of formation + Delta-G solvation = -115.702043 kcal Electronic energy + Delta-G solvation = -26096.796984 eV Core-core repulsion = 22279.892747 eV Total energy + Delta-G solvation = -3816.904238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.15925 -40.43118 -39.15275 -38.11764 -36.54197 -33.54605 -33.12359 -31.93881 -31.30085 -30.03718 -28.33696 -28.02147 -26.10831 -24.92276 -23.81265 -22.92414 -21.96512 -20.94640 -20.36893 -18.96388 -18.47175 -17.82488 -17.64781 -17.18126 -17.05704 -16.70664 -16.53929 -16.18477 -15.94947 -15.37955 -15.04767 -14.81685 -14.60587 -14.45728 -14.28672 -13.94785 -13.57903 -13.34169 -13.14630 -13.07691 -12.76683 -12.70862 -12.63577 -12.53098 -12.40109 -12.22707 -12.19540 -12.15007 -12.08601 -11.80989 -11.47855 -11.41332 -10.90048 -10.75994 -10.71641 -10.64639 -9.68570 -8.82749 -7.84254 -5.35538 1.47785 1.48420 1.53889 1.57888 1.66160 2.50155 2.79721 2.96811 3.27356 3.49001 3.58796 3.68257 3.83872 3.89530 4.00455 4.06359 4.13351 4.16334 4.23643 4.27769 4.31264 4.37623 4.43594 4.47762 4.51408 4.58596 4.68337 4.78947 4.81273 4.88802 4.90049 4.95438 5.03867 5.09097 5.17774 5.18383 5.20708 5.30677 5.44025 5.64548 5.67392 5.89332 6.10295 6.30482 6.54262 7.09984 7.13171 7.82395 8.27775 9.18560 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.002182 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.992419 B =12826.552593 C =13191.146172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.601 5.601 3 C -0.265 4.265 4 H 0.081 0.919 5 C -0.057 4.057 6 N -0.940 5.940 7 Si 0.974 3.026 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.263 1.263 11 C 0.165 3.835 12 H 0.086 0.914 13 C -0.140 4.140 14 C 0.102 3.898 15 N -0.612 5.612 16 C 0.512 3.488 17 O -0.589 6.589 18 C 0.061 3.939 19 O -0.400 6.400 20 C 0.062 3.938 21 C 0.065 3.935 22 H 0.064 0.936 23 C -0.139 4.139 24 C -0.149 4.149 25 C 0.029 3.971 26 O -0.402 6.402 27 C 0.098 3.902 28 H -0.006 1.006 29 H 0.018 0.982 30 H 0.034 0.966 31 H 0.247 0.753 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.030 0.970 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -29.563 -6.548 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.395 4.395 4 H 0.099 0.901 5 C -0.252 4.252 6 N -0.587 5.587 7 Si 0.802 3.198 8 H -0.211 1.211 9 H -0.228 1.228 10 H -0.188 1.188 11 C 0.057 3.943 12 H 0.104 0.896 13 C -0.180 4.180 14 C -0.019 4.019 15 N -0.347 5.347 16 C 0.302 3.698 17 O -0.469 6.469 18 C -0.018 4.018 19 O -0.319 6.319 20 C -0.014 4.014 21 C 0.007 3.993 22 H 0.082 0.918 23 C -0.177 4.177 24 C -0.186 4.186 25 C -0.047 4.047 26 O -0.322 6.322 27 C -0.028 4.028 28 H 0.012 0.988 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.049 0.951 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.794 -29.161 -5.681 29.840 hybrid contribution -0.095 1.438 0.634 1.575 sum 2.699 -27.723 -5.047 28.307 Atomic orbital electron populations 1.20463 0.83128 0.96039 0.97135 1.44129 1.01861 1.01203 1.85008 1.19643 0.99261 0.86231 1.34399 0.90104 1.25929 0.98831 1.02391 0.98053 1.70275 1.22291 1.27785 1.38305 0.85166 0.78618 0.79377 0.76666 1.21061 1.22796 1.18790 1.21653 0.96376 0.84605 0.91704 0.89631 1.23278 1.02457 0.93451 0.98777 1.22681 1.02900 0.98474 0.77868 1.48562 1.67556 1.06038 1.12511 1.20910 0.76219 0.87024 0.85655 1.90706 1.50786 1.86314 1.19130 1.22246 1.04062 0.84740 0.90789 1.88034 1.90842 1.17355 1.35696 1.22902 1.02276 0.80069 0.96129 1.23213 0.84386 0.95058 0.96647 0.91816 1.22915 1.00289 0.92029 1.02430 1.22939 0.97813 0.98061 0.99829 1.23645 1.01144 0.84164 0.95759 1.89251 1.28548 1.39314 1.75063 1.22517 0.99469 0.81206 0.99597 0.98765 0.96316 0.94768 0.94344 0.87636 0.91546 0.88052 0.87282 0.87476 0.86262 0.91232 0.88323 0.88963 0.88189 0.89665 0.88641 0.88547 0.92291 0.95147 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.96 7.75 127.77 0.99 9.95 16 2 N -0.60 -29.67 2.93 -695.56 -2.04 -31.71 16 3 C -0.27 -14.31 9.59 84.04 0.81 -13.50 16 4 H 0.08 4.11 7.85 -2.91 -0.02 4.08 16 5 C -0.06 -3.21 5.07 84.86 0.43 -2.78 16 6 N -0.94 -57.24 10.82 21.65 0.23 -57.01 16 7 Si 0.97 45.11 29.58 68.60 2.03 47.14 16 8 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 9 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 11 C 0.17 6.34 3.44 46.29 0.16 6.50 16 12 H 0.09 3.16 7.93 -2.39 -0.02 3.14 16 13 C -0.14 -3.80 6.62 32.09 0.21 -3.59 16 14 C 0.10 2.08 6.68 86.86 0.58 2.66 16 15 N -0.61 -19.47 3.33 -811.76 -2.70 -22.17 16 16 C 0.51 17.66 7.93 87.66 0.69 18.35 16 17 O -0.59 -27.82 16.83 16.00 0.27 -27.56 16 18 C 0.06 1.33 5.42 71.23 0.39 1.72 16 19 O -0.40 -11.18 9.87 -127.67 -1.26 -12.44 16 20 C 0.06 1.07 5.54 71.98 0.40 1.47 16 21 C 0.06 1.20 3.57 31.09 0.11 1.31 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 C -0.14 -1.36 6.63 31.61 0.21 -1.15 16 24 C -0.15 -1.45 7.09 31.61 0.22 -1.22 16 25 C 0.03 0.48 7.63 72.49 0.55 1.03 16 26 O -0.40 -10.13 11.35 -148.60 -1.69 -11.82 16 27 C 0.10 4.01 6.51 86.73 0.56 4.57 16 28 H -0.01 -0.35 7.25 -2.38 -0.02 -0.36 16 29 H 0.02 0.99 7.41 -2.39 -0.02 0.97 16 30 H 0.03 1.48 6.15 -2.39 -0.01 1.46 16 31 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.07 1.98 6.17 -2.39 -0.01 1.97 16 34 H 0.10 1.50 8.14 -2.38 -0.02 1.49 16 35 H 0.11 1.44 7.47 -2.39 -0.02 1.43 16 36 H 0.11 1.73 7.85 -2.39 -0.02 1.71 16 37 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16 41 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.03 1.49 7.06 -2.39 -0.02 1.48 16 47 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -83.86 374.53 2.10 -81.76 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.94 Total: 8.47 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 6.32 Total: 25.33 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -4.51 Total: -110.88 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -2.68 Total: -51.81 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -83.86 2.10 -81.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194502197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.947 kcal (2) G-P(sol) polarization free energy of solvation -83.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds