Wall clock time and date at job start Fri Apr 10 2020 18:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 119.99849 * 2 1 4 4 H 1.08002 * 119.99780 * 156.64526 * 3 2 1 5 5 C 1.38810 * 120.00243 * 336.64485 * 3 2 1 6 6 N 1.31616 * 119.99837 * 331.05585 * 5 3 2 7 7 Si 1.86803 * 120.00130 * 151.05289 * 5 3 2 8 8 H 1.48502 * 109.47292 * 270.00414 * 7 5 3 9 9 H 1.48506 * 109.46611 * 30.00112 * 7 5 3 10 10 H 1.48497 * 109.47173 * 150.00150 * 7 5 3 11 11 C 1.46501 * 120.00171 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.64343 * 179.29830 * 11 2 1 13 13 C 1.55159 * 110.71784 * 302.44025 * 11 2 1 14 14 C 1.55123 * 101.48289 * 153.73116 * 13 11 2 15 15 N 1.47424 * 104.94492 * 323.22400 * 14 13 11 16 16 C 1.34776 * 125.64760 * 203.97054 * 15 14 13 17 17 O 1.21281 * 119.99790 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00311 * 0.03421 * 16 15 14 19 19 O 1.42891 * 109.47395 * 180.02562 * 18 16 15 20 20 C 1.42900 * 114.00183 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47135 * 180.02562 * 20 19 18 22 22 H 1.08996 * 110.27928 * 54.29237 * 21 20 19 23 23 C 1.54951 * 110.30829 * 176.38981 * 21 20 19 24 24 C 1.55417 * 100.89277 * 155.28183 * 23 21 20 25 25 C 1.54381 * 102.30968 * 325.99277 * 24 23 21 26 26 O 1.43231 * 107.58900 * 21.28118 * 25 24 23 27 27 C 1.47018 * 108.70320 * 24.00324 * 15 14 13 28 28 H 1.09001 * 109.47066 * 92.75500 * 1 2 3 29 29 H 1.09000 * 109.47494 * 212.75694 * 1 2 3 30 30 H 1.08998 * 109.47352 * 332.76048 * 1 2 3 31 31 H 0.96995 * 120.00380 * 353.90354 * 6 5 3 32 32 H 1.08993 * 111.00503 * 271.93697 * 13 11 2 33 33 H 1.09004 * 111.00115 * 35.79267 * 13 11 2 34 34 H 1.09009 * 110.41812 * 204.29511 * 14 13 11 35 35 H 1.08999 * 110.20882 * 82.04711 * 14 13 11 36 36 H 1.08995 * 109.47414 * 300.01167 * 18 16 15 37 37 H 1.09004 * 109.46630 * 60.00034 * 18 16 15 38 38 H 1.09001 * 109.46777 * 300.00047 * 20 19 18 39 39 H 1.09003 * 109.47264 * 59.99872 * 20 19 18 40 40 H 1.09003 * 111.12070 * 273.27141 * 23 21 20 41 41 H 1.08995 * 111.12376 * 37.43958 * 23 21 20 42 42 H 1.09000 * 110.88648 * 207.75069 * 24 23 21 43 43 H 1.09009 * 110.93094 * 84.24683 * 24 23 21 44 44 H 1.09005 * 109.82901 * 261.76896 * 25 24 23 45 45 H 1.09005 * 109.90485 * 140.84283 * 25 24 23 46 46 H 1.09008 * 109.88152 * 239.52386 * 27 15 14 47 47 H 1.08998 * 109.88750 * 118.36000 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1633 1.2242 0.3708 5 6 1.5409 2.3388 -0.4765 6 7 0.6133 2.2569 -1.4066 7 14 2.0382 4.0066 0.2022 8 1 1.1866 4.3387 1.3726 9 1 3.4622 3.9655 0.6219 10 1 1.8613 5.0413 -0.8481 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0915 -0.0120 13 6 1.7978 -2.1328 1.2257 14 6 2.0881 -3.5639 0.7022 15 7 1.7051 -3.5330 -0.7210 16 6 1.3508 -4.6013 -1.4625 17 8 1.0541 -4.4579 -2.6296 18 6 1.3232 -5.9741 -0.8412 19 8 0.9204 -6.9325 -1.8214 20 6 0.8608 -8.2740 -1.3325 21 6 0.4218 -9.2091 -2.4611 22 1 1.0732 -9.0883 -3.3267 23 6 0.4379 -10.6809 -1.9770 24 6 -0.5952 -11.3202 -2.9462 25 6 -1.6065 -10.1723 -3.1532 26 8 -0.9431 -8.9464 -2.8238 27 6 1.7743 -2.1441 -1.1979 28 1 -0.3633 -0.0494 -1.0265 29 1 -0.3634 -0.8642 0.5560 30 1 -0.3634 0.9137 0.4704 31 1 0.4171 1.4027 -1.8221 32 1 2.4187 -1.8964 2.0898 33 1 0.7405 -2.0112 1.4612 34 1 1.4860 -4.2954 1.2414 35 1 3.1485 -3.7945 0.8048 36 1 2.3178 -6.2266 -0.4736 37 1 0.6163 -5.9831 -0.0116 38 1 1.8456 -8.5743 -0.9746 39 1 0.1437 -8.3307 -0.5135 40 1 1.4251 -11.1253 -2.1038 41 1 0.1044 -10.7577 -0.9422 42 1 -1.0768 -12.1834 -2.4866 43 1 -0.1246 -11.5974 -3.8896 44 1 -2.4666 -10.3147 -2.4989 45 1 -1.9330 -10.1483 -4.1929 46 1 0.7965 -1.8276 -1.5611 47 1 2.5126 -2.0623 -1.9956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194502198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:26 Heat of formation + Delta-G solvation = -94.068116 kcal Electronic energy + Delta-G solvation = -26139.820993 eV Core-core repulsion = 22323.854873 eV Total energy + Delta-G solvation = -3815.966120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.00489 -39.68103 -37.98396 -36.96145 -35.04976 -32.56997 -31.84204 -31.19105 -29.75993 -28.83599 -27.14273 -26.15522 -25.36919 -23.21466 -22.29695 -22.05567 -21.62021 -19.48528 -19.14269 -17.58611 -17.55381 -17.15420 -16.63251 -16.34729 -15.94849 -15.73154 -15.15632 -14.96644 -14.28543 -14.07047 -13.85194 -13.71020 -13.56727 -13.38777 -12.83496 -12.71487 -12.47931 -12.29316 -12.16707 -12.00956 -11.94024 -11.65040 -11.57787 -11.49687 -11.22577 -10.91853 -10.80113 -10.72691 -10.57843 -10.17345 -10.04577 -9.90984 -9.77813 -9.59595 -9.47079 -8.38578 -8.36362 -7.01985 -6.09970 -3.25598 2.73671 2.79150 3.44009 3.50612 3.51808 3.68882 3.70234 4.03172 4.40343 4.47781 4.55916 4.61191 4.75482 4.84314 4.87124 4.88782 4.96873 5.02532 5.08023 5.11888 5.17753 5.23422 5.28607 5.35504 5.43482 5.44469 5.45027 5.54928 5.69425 5.71660 5.76946 5.89990 6.23026 6.25168 6.40865 6.49743 6.60561 6.72450 6.76101 6.88355 6.91995 7.11286 7.73328 7.94079 8.37797 8.52349 9.05500 9.79932 10.17513 11.16763 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.002180 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.946573 B =12838.386227 C =13201.403486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.588 5.588 3 C -0.364 4.364 4 H 0.062 0.938 5 C -0.019 4.019 6 N -0.908 5.908 7 Si 1.066 2.934 8 H -0.293 1.293 9 H -0.292 1.292 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.152 4.152 14 C 0.099 3.901 15 N -0.614 5.614 16 C 0.523 3.477 17 O -0.522 6.522 18 C 0.051 3.949 19 O -0.354 6.354 20 C 0.062 3.938 21 C 0.084 3.916 22 H 0.081 0.919 23 C -0.149 4.149 24 C -0.155 4.155 25 C 0.047 3.953 26 O -0.367 6.367 27 C 0.088 3.912 28 H 0.012 0.988 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.272 0.728 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 -27.121 4.834 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.309 5.309 3 C -0.493 4.493 4 H 0.079 0.921 5 C -0.223 4.223 6 N -0.547 5.547 7 Si 0.896 3.104 8 H -0.220 1.220 9 H -0.218 1.218 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.099 0.901 13 C -0.192 4.192 14 C -0.025 4.025 15 N -0.351 5.351 16 C 0.310 3.690 17 O -0.397 6.397 18 C -0.029 4.029 19 O -0.272 6.272 20 C -0.015 4.015 21 C 0.026 3.974 22 H 0.099 0.901 23 C -0.187 4.187 24 C -0.193 4.193 25 C -0.030 4.030 26 O -0.287 6.287 27 C -0.036 4.036 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.520 -25.176 3.882 25.479 hybrid contribution 0.504 -2.028 0.319 2.114 sum 1.024 -27.204 4.201 27.545 Atomic orbital electron populations 1.20981 0.83772 0.98754 0.97847 1.43988 1.01064 1.00657 1.85181 1.19994 1.01009 0.86567 1.41716 0.92065 1.25832 0.98726 1.02110 0.95632 1.70745 1.34892 1.28675 1.20348 0.83510 0.75190 0.75777 0.75916 1.22019 1.21813 1.21668 1.21400 0.96585 0.85684 0.90058 0.90123 1.23352 1.02785 0.92963 1.00087 1.22396 0.99681 0.99200 0.81176 1.48477 1.67150 1.07695 1.11740 1.19811 0.77942 0.84821 0.86421 1.90740 1.47314 1.85379 1.16234 1.22171 1.00628 0.88249 0.91871 1.88081 1.89143 1.15085 1.34901 1.22715 1.00009 0.82599 0.96184 1.22977 0.85016 0.92529 0.96886 0.90100 1.23268 1.00666 0.94341 1.00414 1.23134 0.96974 0.98887 1.00271 1.23152 0.95518 0.83580 1.00752 1.88581 1.22784 1.28936 1.88381 1.22889 1.02303 0.78905 0.99509 0.96969 0.96295 0.92703 0.91718 0.90184 0.90577 0.91356 0.91441 0.90544 0.90471 0.91820 0.92385 0.89430 0.90013 0.89846 0.90321 0.91326 0.91305 0.91194 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.11 7.84 59.84 0.47 3.58 16 2 N -0.59 -14.27 2.81 -171.39 -0.48 -14.75 16 3 C -0.36 -9.90 9.42 -15.06 -0.14 -10.04 16 4 H 0.06 1.66 7.96 -52.49 -0.42 1.24 16 5 C -0.02 -0.55 4.63 -17.43 -0.08 -0.63 16 6 N -0.91 -27.25 12.70 55.49 0.70 -26.54 16 7 Si 1.07 25.03 30.01 -169.99 -5.10 19.93 16 8 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.17 3.41 3.44 -66.09 -0.23 3.18 16 12 H 0.08 1.60 7.94 -51.93 -0.41 1.18 16 13 C -0.15 -2.33 6.65 -24.47 -0.16 -2.49 16 14 C 0.10 1.24 6.69 -2.41 -0.02 1.23 16 15 N -0.61 -10.18 3.33 -170.38 -0.57 -10.75 16 16 C 0.52 9.16 7.93 -10.98 -0.09 9.07 16 17 O -0.52 -11.73 16.83 -14.35 -0.24 -11.97 16 18 C 0.05 0.64 5.42 36.01 0.20 0.84 16 19 O -0.35 -5.17 9.87 -57.83 -0.57 -5.74 16 20 C 0.06 0.61 5.64 37.16 0.21 0.82 16 21 C 0.08 0.81 3.72 -25.70 -0.10 0.72 16 22 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 23 C -0.15 -0.88 6.58 -24.42 -0.16 -1.04 16 24 C -0.16 -0.87 7.02 -24.72 -0.17 -1.05 16 25 C 0.05 0.39 7.80 37.88 0.30 0.68 16 26 O -0.37 -4.58 11.04 -35.96 -0.40 -4.98 16 27 C 0.09 1.75 6.50 -3.07 -0.02 1.73 16 28 H 0.01 0.31 6.46 -51.93 -0.34 -0.03 16 29 H 0.02 0.39 6.22 -51.93 -0.32 0.06 16 30 H 0.05 1.40 7.25 -51.93 -0.38 1.02 16 31 H 0.27 8.27 6.32 -40.82 -0.26 8.02 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.24 6.22 -51.93 -0.32 0.92 16 34 H 0.07 0.68 7.48 -51.92 -0.39 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 1.58 6.76 -51.92 -0.35 1.23 16 47 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -35.61 373.41 -8.90 -44.52 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.88 Total: -1.93 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 0.00 Total: 6.59 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.34 Total: -52.04 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.21 Total: -22.70 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.61 -8.90 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194502198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.551 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds