Wall clock time and date at job start Fri Apr 10 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 119.99849 * 2 1 4 4 H 1.08002 * 119.99780 * 156.64526 * 3 2 1 5 5 C 1.38810 * 120.00243 * 336.64485 * 3 2 1 6 6 N 1.31616 * 119.99837 * 331.05585 * 5 3 2 7 7 Si 1.86803 * 120.00130 * 151.05289 * 5 3 2 8 8 H 1.48502 * 109.47292 * 270.00414 * 7 5 3 9 9 H 1.48506 * 109.46611 * 30.00112 * 7 5 3 10 10 H 1.48497 * 109.47173 * 150.00150 * 7 5 3 11 11 C 1.46501 * 120.00171 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.64343 * 179.29830 * 11 2 1 13 13 C 1.55159 * 110.71784 * 302.44025 * 11 2 1 14 14 C 1.55123 * 101.48289 * 153.73116 * 13 11 2 15 15 N 1.47424 * 104.94492 * 323.22400 * 14 13 11 16 16 C 1.34776 * 125.64760 * 203.97054 * 15 14 13 17 17 O 1.21281 * 119.99790 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00311 * 0.03421 * 16 15 14 19 19 O 1.42891 * 109.47395 * 180.02562 * 18 16 15 20 20 C 1.42900 * 114.00183 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47135 * 180.02562 * 20 19 18 22 22 H 1.08996 * 110.27928 * 54.29237 * 21 20 19 23 23 C 1.54951 * 110.30829 * 176.38981 * 21 20 19 24 24 C 1.55417 * 100.89277 * 155.28183 * 23 21 20 25 25 C 1.54381 * 102.30968 * 325.99277 * 24 23 21 26 26 O 1.43231 * 107.58900 * 21.28118 * 25 24 23 27 27 C 1.47018 * 108.70320 * 24.00324 * 15 14 13 28 28 H 1.09001 * 109.47066 * 92.75500 * 1 2 3 29 29 H 1.09000 * 109.47494 * 212.75694 * 1 2 3 30 30 H 1.08998 * 109.47352 * 332.76048 * 1 2 3 31 31 H 0.96995 * 120.00380 * 353.90354 * 6 5 3 32 32 H 1.08993 * 111.00503 * 271.93697 * 13 11 2 33 33 H 1.09004 * 111.00115 * 35.79267 * 13 11 2 34 34 H 1.09009 * 110.41812 * 204.29511 * 14 13 11 35 35 H 1.08999 * 110.20882 * 82.04711 * 14 13 11 36 36 H 1.08995 * 109.47414 * 300.01167 * 18 16 15 37 37 H 1.09004 * 109.46630 * 60.00034 * 18 16 15 38 38 H 1.09001 * 109.46777 * 300.00047 * 20 19 18 39 39 H 1.09003 * 109.47264 * 59.99872 * 20 19 18 40 40 H 1.09003 * 111.12070 * 273.27141 * 23 21 20 41 41 H 1.08995 * 111.12376 * 37.43958 * 23 21 20 42 42 H 1.09000 * 110.88648 * 207.75069 * 24 23 21 43 43 H 1.09009 * 110.93094 * 84.24683 * 24 23 21 44 44 H 1.09005 * 109.82901 * 261.76896 * 25 24 23 45 45 H 1.09005 * 109.90485 * 140.84283 * 25 24 23 46 46 H 1.09008 * 109.88152 * 239.52386 * 27 15 14 47 47 H 1.08998 * 109.88750 * 118.36000 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1633 1.2242 0.3708 5 6 1.5409 2.3388 -0.4765 6 7 0.6133 2.2569 -1.4066 7 14 2.0382 4.0066 0.2022 8 1 1.1866 4.3387 1.3726 9 1 3.4622 3.9655 0.6219 10 1 1.8613 5.0413 -0.8481 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0915 -0.0120 13 6 1.7978 -2.1328 1.2257 14 6 2.0881 -3.5639 0.7022 15 7 1.7051 -3.5330 -0.7210 16 6 1.3508 -4.6013 -1.4625 17 8 1.0541 -4.4579 -2.6296 18 6 1.3232 -5.9741 -0.8412 19 8 0.9204 -6.9325 -1.8214 20 6 0.8608 -8.2740 -1.3325 21 6 0.4218 -9.2091 -2.4611 22 1 1.0732 -9.0883 -3.3267 23 6 0.4379 -10.6809 -1.9770 24 6 -0.5952 -11.3202 -2.9462 25 6 -1.6065 -10.1723 -3.1532 26 8 -0.9431 -8.9464 -2.8238 27 6 1.7743 -2.1441 -1.1979 28 1 -0.3633 -0.0494 -1.0265 29 1 -0.3634 -0.8642 0.5560 30 1 -0.3634 0.9137 0.4704 31 1 0.4171 1.4027 -1.8221 32 1 2.4187 -1.8964 2.0898 33 1 0.7405 -2.0112 1.4612 34 1 1.4860 -4.2954 1.2414 35 1 3.1485 -3.7945 0.8048 36 1 2.3178 -6.2266 -0.4736 37 1 0.6163 -5.9831 -0.0116 38 1 1.8456 -8.5743 -0.9746 39 1 0.1437 -8.3307 -0.5135 40 1 1.4251 -11.1253 -2.1038 41 1 0.1044 -10.7577 -0.9422 42 1 -1.0768 -12.1834 -2.4866 43 1 -0.1246 -11.5974 -3.8896 44 1 -2.4666 -10.3147 -2.4989 45 1 -1.9330 -10.1483 -4.1929 46 1 0.7965 -1.8276 -1.5611 47 1 2.5126 -2.0623 -1.9956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194502198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:25 Heat of formation + Delta-G solvation = -118.903079 kcal Electronic energy + Delta-G solvation = -26140.897918 eV Core-core repulsion = 22323.854873 eV Total energy + Delta-G solvation = -3817.043045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24154 -40.48401 -39.27580 -38.18798 -36.83067 -33.60504 -33.17851 -31.98087 -31.29511 -30.10997 -28.51241 -28.02116 -26.13759 -24.79476 -23.85380 -22.57341 -22.28478 -21.10141 -20.45889 -19.54272 -18.49921 -18.08827 -17.76071 -17.32705 -16.98062 -16.74048 -16.36184 -15.99491 -15.91805 -15.57709 -15.38307 -14.84700 -14.66697 -14.59398 -14.16856 -14.14350 -13.69558 -13.54204 -13.17747 -13.07659 -12.89384 -12.77469 -12.66959 -12.49227 -12.44401 -12.36166 -12.20868 -12.16722 -11.86830 -11.71839 -11.69831 -11.44758 -10.96270 -10.74647 -10.50890 -10.46830 -9.77010 -9.06214 -8.28006 -5.41767 1.47348 1.57330 1.60948 1.67461 1.84643 2.64298 2.74186 2.89257 3.16362 3.40808 3.45385 3.54879 3.73754 3.91790 3.95310 3.96801 4.08851 4.11974 4.14660 4.20521 4.26377 4.27891 4.36758 4.38947 4.49463 4.53665 4.58789 4.64403 4.76138 4.79888 4.82571 4.87508 4.92099 4.95926 4.99348 5.04547 5.15062 5.21192 5.22866 5.34321 5.81842 5.98792 6.16194 6.32875 6.46689 6.97804 7.05522 7.73264 8.12281 8.95777 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.002180 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.946573 B =12838.386227 C =13201.403486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.148 3.852 2 N -0.604 5.604 3 C -0.362 4.362 4 H 0.064 0.936 5 C -0.078 4.078 6 N -0.942 5.942 7 Si 1.118 2.882 8 H -0.283 1.283 9 H -0.268 1.268 10 H -0.300 1.300 11 C 0.165 3.835 12 H 0.080 0.920 13 C -0.138 4.138 14 C 0.102 3.898 15 N -0.612 5.612 16 C 0.513 3.487 17 O -0.588 6.588 18 C 0.061 3.939 19 O -0.400 6.400 20 C 0.058 3.942 21 C 0.070 3.930 22 H 0.064 0.936 23 C -0.137 4.137 24 C -0.149 4.149 25 C 0.035 3.965 26 O -0.411 6.411 27 C 0.097 3.903 28 H -0.017 1.017 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.252 0.748 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.032 0.968 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.808 -29.992 8.291 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.326 5.326 3 C -0.491 4.491 4 H 0.082 0.918 5 C -0.274 4.274 6 N -0.583 5.583 7 Si 0.943 3.057 8 H -0.209 1.209 9 H -0.192 1.192 10 H -0.227 1.227 11 C 0.057 3.943 12 H 0.098 0.902 13 C -0.178 4.178 14 C -0.019 4.019 15 N -0.347 5.347 16 C 0.303 3.697 17 O -0.468 6.468 18 C -0.018 4.018 19 O -0.319 6.319 20 C -0.018 4.018 21 C 0.012 3.988 22 H 0.082 0.918 23 C -0.174 4.174 24 C -0.186 4.186 25 C -0.041 4.041 26 O -0.331 6.331 27 C -0.028 4.028 28 H 0.001 0.999 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.167 -28.114 7.407 29.154 hybrid contribution 0.021 -1.223 -0.799 1.461 sum 2.187 -29.337 6.608 30.151 Atomic orbital electron populations 1.20731 0.83904 0.98786 0.96316 1.44194 1.01295 1.01700 1.85444 1.20298 1.01142 0.87771 1.39873 0.91788 1.27247 0.98779 1.05889 0.95524 1.70886 1.37324 1.27508 1.22606 0.82821 0.76307 0.71442 0.75166 1.20917 1.19240 1.22707 1.21610 0.96111 0.84465 0.92149 0.90154 1.23237 1.02640 0.93468 0.98436 1.22719 1.02553 0.98282 0.78343 1.48538 1.66637 1.05944 1.13544 1.20947 0.76240 0.86770 0.85782 1.90708 1.50214 1.86519 1.19367 1.22240 1.03789 0.84518 0.91271 1.88040 1.89710 1.17303 1.36839 1.22998 1.02186 0.80331 0.96284 1.23208 0.83629 0.95166 0.96755 0.91836 1.23261 1.01861 0.91390 1.00921 1.23144 0.96291 0.98421 1.00793 1.23355 0.96429 0.83637 1.00699 1.88535 1.24351 1.31485 1.88733 1.22460 0.99459 0.81755 0.99170 0.99865 0.93102 0.95118 0.93741 0.87752 0.91426 0.87008 0.88157 0.86293 0.87405 0.88412 0.91255 0.87348 0.88671 0.87640 0.89955 0.90603 0.91795 0.94998 0.94219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.25 7.84 127.77 1.00 8.25 16 2 N -0.60 -29.79 2.81 -696.15 -1.96 -31.75 16 3 C -0.36 -19.83 9.42 84.03 0.79 -19.04 16 4 H 0.06 3.42 7.96 -2.91 -0.02 3.40 16 5 C -0.08 -4.44 4.63 84.86 0.39 -4.05 16 6 N -0.94 -58.95 12.70 21.65 0.27 -58.68 16 7 Si 1.12 50.88 30.01 68.60 2.06 52.94 16 8 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 9 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 11 C 0.17 6.42 3.44 46.18 0.16 6.57 16 12 H 0.08 3.11 7.94 -2.39 -0.02 3.09 16 13 C -0.14 -3.78 6.65 32.06 0.21 -3.57 16 14 C 0.10 2.09 6.69 86.93 0.58 2.67 16 15 N -0.61 -19.37 3.33 -811.36 -2.70 -22.07 16 16 C 0.51 17.57 7.93 87.66 0.69 18.26 16 17 O -0.59 -27.63 16.83 16.00 0.27 -27.36 16 18 C 0.06 1.33 5.42 71.24 0.39 1.71 16 19 O -0.40 -11.12 9.87 -127.37 -1.26 -12.38 16 20 C 0.06 0.98 5.64 71.98 0.41 1.39 16 21 C 0.07 1.28 3.72 31.26 0.12 1.39 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 23 C -0.14 -1.23 6.58 32.09 0.21 -1.01 16 24 C -0.15 -1.37 7.02 31.89 0.22 -1.14 16 25 C 0.03 0.56 7.80 72.45 0.56 1.13 16 26 O -0.41 -10.34 11.04 -148.29 -1.64 -11.98 16 27 C 0.10 3.98 6.50 86.73 0.56 4.54 16 28 H -0.02 -0.91 6.46 -2.39 -0.02 -0.92 16 29 H 0.05 2.11 6.22 -2.39 -0.01 2.09 16 30 H 0.03 1.61 7.25 -2.39 -0.02 1.59 16 31 H 0.25 16.37 6.32 -92.71 -0.59 15.79 16 32 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 1.99 6.22 -2.38 -0.01 1.98 16 34 H 0.11 1.45 7.48 -2.38 -0.02 1.44 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.11 1.70 7.85 -2.39 -0.02 1.68 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 0.62 8.06 -2.39 -0.02 0.60 16 42 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.03 1.53 6.76 -2.38 -0.02 1.52 16 47 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -85.51 373.41 2.48 -83.03 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.13 Total: 11.13 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.31 Total: 17.11 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -4.38 Total: -112.49 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -2.63 Total: -51.72 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.06 Total: 52.94 kcal Total: -85.51 2.48 -83.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194502198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.873 kcal (2) G-P(sol) polarization free energy of solvation -85.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds