Wall clock time and date at job start Fri Apr 10 2020 18:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 119.99628 * 2 1 4 4 H 1.08008 * 120.00027 * 146.91178 * 3 2 1 5 5 C 1.38807 * 120.00446 * 326.90993 * 3 2 1 6 6 N 1.31626 * 120.00582 * 154.35041 * 5 3 2 7 7 Si 1.86800 * 119.99921 * 334.35361 * 5 3 2 8 8 H 1.48508 * 109.47068 * 95.39126 * 7 5 3 9 9 H 1.48504 * 109.47153 * 215.39053 * 7 5 3 10 10 H 1.48499 * 109.47311 * 335.39136 * 7 5 3 11 11 C 1.46497 * 120.00020 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.63790 * 176.85833 * 11 2 1 13 13 C 1.55156 * 110.72170 * 299.99748 * 11 2 1 14 14 C 1.54908 * 101.57938 * 154.04202 * 13 11 2 15 15 N 1.47422 * 104.93107 * 322.93400 * 14 13 11 16 16 C 1.34780 * 125.65185 * 204.14971 * 15 14 13 17 17 O 1.21278 * 120.00035 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.99596 * 0.03400 * 16 15 14 19 19 O 1.42906 * 109.47057 * 179.97438 * 18 16 15 20 20 C 1.42895 * 114.00180 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47144 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.82599 * 305.70048 * 21 20 19 23 23 C 1.54376 * 109.83116 * 184.81253 * 21 20 19 24 24 C 1.55452 * 102.18651 * 219.18102 * 23 21 20 25 25 C 1.54940 * 100.98742 * 34.04279 * 24 23 21 26 26 O 1.43242 * 109.82995 * 66.58718 * 21 20 19 27 27 C 1.47296 * 108.55782 * 24.15818 * 15 14 13 28 28 H 1.09006 * 109.47059 * 274.90812 * 1 2 3 29 29 H 1.08999 * 109.47063 * 34.90982 * 1 2 3 30 30 H 1.08998 * 109.46982 * 154.91186 * 1 2 3 31 31 H 0.96994 * 120.00515 * 180.02562 * 6 5 3 32 32 H 1.09005 * 111.00121 * 35.97109 * 13 11 2 33 33 H 1.08996 * 111.04192 * 272.13360 * 13 11 2 34 34 H 1.08994 * 110.36624 * 81.83246 * 14 13 11 35 35 H 1.09007 * 110.36818 * 204.04341 * 14 13 11 36 36 H 1.09004 * 109.47253 * 299.99216 * 18 16 15 37 37 H 1.08996 * 109.47469 * 60.00112 * 18 16 15 38 38 H 1.08998 * 109.47006 * 299.99560 * 20 19 18 39 39 H 1.09002 * 109.47382 * 59.99815 * 20 19 18 40 40 H 1.09002 * 110.84963 * 337.32175 * 23 21 20 41 41 H 1.09009 * 110.84966 * 100.94516 * 23 21 20 42 42 H 1.09002 * 111.06047 * 276.12361 * 24 23 21 43 43 H 1.09005 * 111.18193 * 152.00859 * 24 23 21 44 44 H 1.09009 * 110.30936 * 204.69127 * 25 24 23 45 45 H 1.09001 * 110.39516 * 82.56414 * 25 24 23 46 46 H 1.08994 * 109.85467 * 239.50174 * 27 15 14 47 47 H 1.08997 * 110.00234 * 118.42696 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0983 1.2618 0.5106 5 6 1.6244 2.2906 -0.6563 6 7 1.9598 3.5045 -0.2736 7 14 0.4416 2.0544 -2.0826 8 1 -0.9556 2.1392 -1.5863 9 1 0.6716 3.1142 -3.0972 10 1 0.6682 0.7222 -2.6983 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0922 -0.0554 13 6 1.8437 -2.1063 1.2577 14 6 2.1217 -3.5467 0.7600 15 7 1.6840 -3.5533 -0.6477 16 6 1.3044 -4.6410 -1.3473 17 8 0.9625 -4.5282 -2.5054 18 6 1.3048 -5.9972 -0.6903 19 8 0.8660 -6.9813 -1.6290 20 6 0.8301 -8.3099 -1.1042 21 6 0.3480 -9.2742 -2.1898 22 1 -0.6063 -8.9326 -2.5906 23 6 0.1905 -10.6917 -1.5989 24 6 0.7169 -11.5891 -2.7539 25 6 1.8274 -10.6860 -3.3470 26 8 1.3184 -9.3469 -3.2410 27 6 1.7315 -2.1731 -1.1599 28 1 -0.3633 0.0879 1.0240 29 1 -0.3633 0.8427 -0.5881 30 1 -0.3633 -0.9307 -0.4357 31 1 1.5925 4.2764 -0.7319 32 1 0.7949 -1.9818 1.5277 33 1 2.4934 -1.8499 2.0945 34 1 3.1858 -3.7726 0.8275 35 1 1.5443 -4.2666 1.3402 36 1 2.3136 -6.2385 -0.3554 37 1 0.6305 -5.9864 0.1660 38 1 1.8293 -8.5991 -0.7786 39 1 0.1466 -8.3473 -0.2560 40 1 0.8039 -10.8100 -0.7057 41 1 -0.8560 -10.9083 -1.3838 42 1 -0.0658 -11.7825 -3.4876 43 1 1.1317 -12.5214 -2.3706 44 1 2.0052 -10.9415 -4.3917 45 1 2.7475 -10.7876 -2.7714 46 1 0.7397 -1.8674 -1.4928 47 1 2.4372 -2.1068 -1.9879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194502199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:29 Heat of formation + Delta-G solvation = -84.022729 kcal Electronic energy + Delta-G solvation = -26229.930419 eV Core-core repulsion = 22414.399899 eV Total energy + Delta-G solvation = -3815.530520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.06477 -39.73402 -38.00791 -36.97941 -34.96664 -32.59804 -31.91980 -31.21715 -30.32413 -28.91515 -27.36941 -26.21973 -25.47478 -23.53446 -22.37794 -22.16014 -21.52627 -19.54296 -19.14526 -17.60191 -17.22066 -17.12196 -16.65102 -16.35266 -16.06197 -15.78958 -15.42847 -15.07454 -14.55999 -14.23029 -13.90429 -13.79913 -13.43272 -13.34982 -12.82601 -12.77645 -12.34840 -12.32704 -12.20101 -12.06477 -12.00578 -11.89968 -11.74697 -11.72860 -11.59477 -11.28589 -10.94749 -10.83343 -10.56620 -10.19721 -9.98736 -9.92496 -9.81337 -9.61640 -9.55161 -8.52549 -8.41418 -6.97884 -6.05920 -3.42856 2.69914 2.75150 3.31266 3.43280 3.48626 3.54811 3.72064 4.00806 4.35833 4.44822 4.49514 4.59384 4.72216 4.79166 4.81965 4.85222 4.92399 4.96334 5.03645 5.08119 5.15793 5.18488 5.21992 5.30756 5.33337 5.38788 5.41275 5.51940 5.63330 5.71676 5.72945 5.85109 6.09720 6.25128 6.27553 6.40898 6.42136 6.63150 6.66328 6.69271 6.76827 6.91077 7.68608 7.93929 8.28429 8.33722 8.88994 9.64593 10.01779 11.09197 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.002361 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.086549 B =11854.517115 C =12275.650977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.595 5.595 3 C -0.275 4.275 4 H 0.084 0.916 5 C 0.037 3.963 6 N -0.893 5.893 7 Si 0.878 3.122 8 H -0.286 1.286 9 H -0.301 1.301 10 H -0.269 1.269 11 C 0.171 3.829 12 H 0.089 0.911 13 C -0.149 4.149 14 C 0.098 3.902 15 N -0.615 5.615 16 C 0.524 3.476 17 O -0.522 6.522 18 C 0.050 3.950 19 O -0.353 6.353 20 C 0.051 3.949 21 C 0.083 3.917 22 H 0.090 0.910 23 C -0.148 4.148 24 C -0.156 4.156 25 C 0.045 3.955 26 O -0.364 6.364 27 C 0.085 3.915 28 H 0.022 0.978 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 -29.896 3.079 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.317 5.317 3 C -0.403 4.403 4 H 0.101 0.899 5 C -0.164 4.164 6 N -0.534 5.534 7 Si 0.709 3.291 8 H -0.214 1.214 9 H -0.229 1.229 10 H -0.194 1.194 11 C 0.062 3.938 12 H 0.107 0.893 13 C -0.190 4.190 14 C -0.025 4.025 15 N -0.352 5.352 16 C 0.311 3.689 17 O -0.397 6.397 18 C -0.030 4.030 19 O -0.271 6.271 20 C -0.026 4.026 21 C 0.025 3.975 22 H 0.108 0.892 23 C -0.186 4.186 24 C -0.194 4.194 25 C -0.032 4.032 26 O -0.283 6.283 27 C -0.039 4.039 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.802 -29.458 2.048 29.584 hybrid contribution -0.674 -0.261 -0.332 0.795 sum -2.475 -29.719 1.716 29.871 Atomic orbital electron populations 1.21338 0.84623 0.98861 0.98796 1.44083 1.00621 1.01337 1.85642 1.18777 1.06839 0.85500 1.29159 0.89880 1.25373 0.98193 0.95084 0.97796 1.69897 1.45941 0.97596 1.39919 0.86969 0.80301 0.77701 0.84125 1.21422 1.22947 1.19436 1.21509 0.97003 0.85255 0.90075 0.89291 1.23315 1.02779 0.92752 1.00109 1.22388 0.99467 0.99202 0.81484 1.48540 1.65905 1.07544 1.13201 1.19812 0.78057 0.84552 0.86483 1.90739 1.46724 1.85625 1.16632 1.22171 1.00535 0.87934 0.92311 1.88083 1.87672 1.14841 1.36508 1.23002 1.00513 0.83100 0.96018 1.22752 0.93220 0.93745 0.87784 0.89174 1.23142 1.03072 0.93339 0.99047 1.23300 0.99085 0.99044 0.97927 1.23429 0.96163 0.82030 1.01545 1.88614 1.57870 1.28212 1.53639 1.22923 1.02460 0.79341 0.99193 0.96012 0.94172 0.94511 0.92574 0.90707 0.89943 0.91277 0.91343 0.90474 0.90560 0.92734 0.92153 0.90171 0.89452 0.90137 0.89747 0.89617 0.92265 0.91174 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.35 8.50 59.85 0.51 2.86 16 2 N -0.60 -13.70 2.57 -171.39 -0.44 -14.14 16 3 C -0.27 -7.47 9.87 -15.06 -0.15 -7.61 16 4 H 0.08 2.39 8.06 -52.48 -0.42 1.96 16 5 C 0.04 1.05 5.29 -17.43 -0.09 0.96 16 6 N -0.89 -26.89 13.97 55.49 0.78 -26.12 16 7 Si 0.88 22.52 25.08 -169.99 -4.26 18.25 16 8 H -0.29 -7.14 6.64 56.52 0.38 -6.76 16 9 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 10 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 11 C 0.17 3.18 3.44 -66.10 -0.23 2.95 16 12 H 0.09 1.66 7.95 -51.93 -0.41 1.24 16 13 C -0.15 -2.15 6.66 -24.58 -0.16 -2.32 16 14 C 0.10 1.16 6.68 -2.53 -0.02 1.14 16 15 N -0.62 -9.67 3.34 -170.31 -0.57 -10.24 16 16 C 0.52 8.79 7.93 -10.99 -0.09 8.71 16 17 O -0.52 -11.35 16.84 -14.35 -0.24 -11.59 16 18 C 0.05 0.61 5.42 36.00 0.20 0.80 16 19 O -0.35 -5.00 9.86 -58.80 -0.58 -5.58 16 20 C 0.05 0.48 5.47 37.16 0.20 0.68 16 21 C 0.08 0.77 3.81 -26.01 -0.10 0.67 16 22 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 23 C -0.15 -0.82 6.56 -24.71 -0.16 -0.98 16 24 C -0.16 -0.82 7.16 -24.40 -0.17 -1.00 16 25 C 0.04 0.34 7.78 38.18 0.30 0.64 16 26 O -0.36 -4.34 11.00 -37.68 -0.41 -4.76 16 27 C 0.08 1.58 6.43 -2.91 -0.02 1.56 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.96 2.74 -51.93 -0.14 0.82 16 30 H 0.04 0.72 6.17 -51.93 -0.32 0.40 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.07 1.13 7.34 -51.93 -0.38 0.75 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.62 7.47 -51.92 -0.39 0.23 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.35 7.85 -51.93 -0.41 -0.05 16 41 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 1.46 6.02 -51.93 -0.31 1.15 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -35.63 370.10 -7.99 -43.62 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -7.85 Total: -4.10 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 0.01 Total: 9.08 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.23 Total: -50.49 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.24 Total: -21.93 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.26 Total: 18.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.63 -7.99 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194502199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.401 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds