Wall clock time and date at job start Fri Apr 10 2020 18:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 119.99628 * 2 1 4 4 H 1.08008 * 120.00027 * 146.91178 * 3 2 1 5 5 C 1.38807 * 120.00446 * 326.90993 * 3 2 1 6 6 N 1.31626 * 120.00582 * 154.35041 * 5 3 2 7 7 Si 1.86800 * 119.99921 * 334.35361 * 5 3 2 8 8 H 1.48508 * 109.47068 * 95.39126 * 7 5 3 9 9 H 1.48504 * 109.47153 * 215.39053 * 7 5 3 10 10 H 1.48499 * 109.47311 * 335.39136 * 7 5 3 11 11 C 1.46497 * 120.00020 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.63790 * 176.85833 * 11 2 1 13 13 C 1.55156 * 110.72170 * 299.99748 * 11 2 1 14 14 C 1.54908 * 101.57938 * 154.04202 * 13 11 2 15 15 N 1.47422 * 104.93107 * 322.93400 * 14 13 11 16 16 C 1.34780 * 125.65185 * 204.14971 * 15 14 13 17 17 O 1.21278 * 120.00035 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.99596 * 0.03400 * 16 15 14 19 19 O 1.42906 * 109.47057 * 179.97438 * 18 16 15 20 20 C 1.42895 * 114.00180 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47144 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.82599 * 305.70048 * 21 20 19 23 23 C 1.54376 * 109.83116 * 184.81253 * 21 20 19 24 24 C 1.55452 * 102.18651 * 219.18102 * 23 21 20 25 25 C 1.54940 * 100.98742 * 34.04279 * 24 23 21 26 26 O 1.43242 * 109.82995 * 66.58718 * 21 20 19 27 27 C 1.47296 * 108.55782 * 24.15818 * 15 14 13 28 28 H 1.09006 * 109.47059 * 274.90812 * 1 2 3 29 29 H 1.08999 * 109.47063 * 34.90982 * 1 2 3 30 30 H 1.08998 * 109.46982 * 154.91186 * 1 2 3 31 31 H 0.96994 * 120.00515 * 180.02562 * 6 5 3 32 32 H 1.09005 * 111.00121 * 35.97109 * 13 11 2 33 33 H 1.08996 * 111.04192 * 272.13360 * 13 11 2 34 34 H 1.08994 * 110.36624 * 81.83246 * 14 13 11 35 35 H 1.09007 * 110.36818 * 204.04341 * 14 13 11 36 36 H 1.09004 * 109.47253 * 299.99216 * 18 16 15 37 37 H 1.08996 * 109.47469 * 60.00112 * 18 16 15 38 38 H 1.08998 * 109.47006 * 299.99560 * 20 19 18 39 39 H 1.09002 * 109.47382 * 59.99815 * 20 19 18 40 40 H 1.09002 * 110.84963 * 337.32175 * 23 21 20 41 41 H 1.09009 * 110.84966 * 100.94516 * 23 21 20 42 42 H 1.09002 * 111.06047 * 276.12361 * 24 23 21 43 43 H 1.09005 * 111.18193 * 152.00859 * 24 23 21 44 44 H 1.09009 * 110.30936 * 204.69127 * 25 24 23 45 45 H 1.09001 * 110.39516 * 82.56414 * 25 24 23 46 46 H 1.08994 * 109.85467 * 239.50174 * 27 15 14 47 47 H 1.08997 * 110.00234 * 118.42696 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0983 1.2618 0.5106 5 6 1.6244 2.2906 -0.6563 6 7 1.9598 3.5045 -0.2736 7 14 0.4416 2.0544 -2.0826 8 1 -0.9556 2.1392 -1.5863 9 1 0.6716 3.1142 -3.0972 10 1 0.6682 0.7222 -2.6983 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0922 -0.0554 13 6 1.8437 -2.1063 1.2577 14 6 2.1217 -3.5467 0.7600 15 7 1.6840 -3.5533 -0.6477 16 6 1.3044 -4.6410 -1.3473 17 8 0.9625 -4.5282 -2.5054 18 6 1.3048 -5.9972 -0.6903 19 8 0.8660 -6.9813 -1.6290 20 6 0.8301 -8.3099 -1.1042 21 6 0.3480 -9.2742 -2.1898 22 1 -0.6063 -8.9326 -2.5906 23 6 0.1905 -10.6917 -1.5989 24 6 0.7169 -11.5891 -2.7539 25 6 1.8274 -10.6860 -3.3470 26 8 1.3184 -9.3469 -3.2410 27 6 1.7315 -2.1731 -1.1599 28 1 -0.3633 0.0879 1.0240 29 1 -0.3633 0.8427 -0.5881 30 1 -0.3633 -0.9307 -0.4357 31 1 1.5925 4.2764 -0.7319 32 1 0.7949 -1.9818 1.5277 33 1 2.4934 -1.8499 2.0945 34 1 3.1858 -3.7726 0.8275 35 1 1.5443 -4.2666 1.3402 36 1 2.3136 -6.2385 -0.3554 37 1 0.6305 -5.9864 0.1660 38 1 1.8293 -8.5991 -0.7786 39 1 0.1466 -8.3473 -0.2560 40 1 0.8039 -10.8100 -0.7057 41 1 -0.8560 -10.9083 -1.3838 42 1 -0.0658 -11.7825 -3.4876 43 1 1.1317 -12.5214 -2.3706 44 1 2.0052 -10.9415 -4.3917 45 1 2.7475 -10.7876 -2.7714 46 1 0.7397 -1.8674 -1.4928 47 1 2.4372 -2.1068 -1.9879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194502199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:28 Heat of formation + Delta-G solvation = -109.519776 kcal Electronic energy + Delta-G solvation = -26231.036054 eV Core-core repulsion = 22414.399899 eV Total energy + Delta-G solvation = -3816.636155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20447 -40.50694 -39.23736 -38.12245 -36.65217 -33.85666 -33.16951 -32.10784 -31.57201 -30.09920 -28.53167 -28.05989 -26.21155 -25.11501 -23.75293 -22.63394 -22.14616 -21.02870 -20.40135 -19.05469 -18.45702 -18.11216 -17.83127 -17.45409 -17.19127 -16.79339 -16.63124 -16.34339 -15.64974 -15.41019 -15.23387 -14.78323 -14.60100 -14.44407 -14.39854 -14.24508 -13.97457 -13.64813 -13.42363 -13.20307 -13.01897 -12.87810 -12.64001 -12.61007 -12.39745 -12.37215 -12.25994 -12.10216 -12.07813 -11.70721 -11.60931 -11.50933 -10.92465 -10.72000 -10.63744 -10.49177 -9.71989 -8.89705 -8.25784 -5.57289 1.24402 1.38180 1.47357 1.51364 1.61521 2.36312 2.72931 2.97436 3.00763 3.28279 3.47746 3.56115 3.77456 3.91674 3.95448 3.98352 4.11519 4.16448 4.20054 4.25225 4.26806 4.31545 4.41209 4.44844 4.46718 4.47467 4.65815 4.66694 4.70767 4.80267 4.87675 4.89557 4.93390 4.94642 4.97560 5.04087 5.15924 5.25573 5.26541 5.37689 5.86815 5.99975 6.13100 6.20660 6.50019 6.89253 7.08891 7.56944 7.97998 8.93629 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.002361 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.086549 B =11854.517115 C =12275.650977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.609 5.609 3 C -0.256 4.256 4 H 0.060 0.940 5 C -0.015 4.015 6 N -0.938 5.938 7 Si 0.933 3.067 8 H -0.275 1.275 9 H -0.309 1.309 10 H -0.275 1.275 11 C 0.164 3.836 12 H 0.085 0.915 13 C -0.137 4.137 14 C 0.102 3.898 15 N -0.612 5.612 16 C 0.515 3.485 17 O -0.587 6.587 18 C 0.059 3.941 19 O -0.398 6.398 20 C 0.048 3.952 21 C 0.071 3.929 22 H 0.071 0.929 23 C -0.138 4.138 24 C -0.150 4.150 25 C 0.034 3.966 26 O -0.408 6.408 27 C 0.092 3.908 28 H 0.036 0.964 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.264 0.736 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.045 0.955 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -33.570 5.455 34.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.331 5.331 3 C -0.386 4.386 4 H 0.078 0.922 5 C -0.213 4.213 6 N -0.581 5.581 7 Si 0.764 3.236 8 H -0.202 1.202 9 H -0.238 1.238 10 H -0.200 1.200 11 C 0.056 3.944 12 H 0.103 0.897 13 C -0.177 4.177 14 C -0.020 4.020 15 N -0.347 5.347 16 C 0.305 3.695 17 O -0.466 6.466 18 C -0.020 4.020 19 O -0.317 6.317 20 C -0.028 4.028 21 C 0.013 3.987 22 H 0.089 0.911 23 C -0.175 4.175 24 C -0.187 4.187 25 C -0.042 4.042 26 O -0.328 6.328 27 C -0.034 4.034 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.140 -33.197 4.474 33.565 hybrid contribution -0.497 0.797 -1.050 1.409 sum -2.637 -32.400 3.423 32.687 Atomic orbital electron populations 1.21334 0.83863 0.98900 0.99376 1.44172 1.01279 1.01638 1.86047 1.18756 1.05754 0.86968 1.27118 0.92225 1.25872 1.00500 0.95029 0.99853 1.69985 1.48440 0.98279 1.41437 0.86065 0.79389 0.76713 0.81407 1.20237 1.23783 1.19986 1.21657 0.96338 0.83959 0.92466 0.89731 1.23202 1.02997 0.93350 0.98156 1.22673 1.01885 0.98325 0.79086 1.48589 1.65381 1.06001 1.14773 1.20857 0.76461 0.86313 0.85891 1.90708 1.49606 1.86692 1.19634 1.22250 1.03295 0.84487 0.91975 1.88042 1.88169 1.16916 1.38571 1.23249 1.02071 0.80873 0.96655 1.22949 0.91965 0.96103 0.87678 0.91123 1.23142 1.04459 0.90562 0.99371 1.23299 0.98206 0.99429 0.97789 1.23641 0.97312 0.81128 1.02091 1.88566 1.58630 1.30646 1.54939 1.22540 1.00364 0.81781 0.98682 0.94584 0.96286 0.92630 0.92713 0.90951 0.88219 0.88613 0.86944 0.87275 0.86755 0.91428 0.89133 0.88360 0.87927 0.90303 0.87402 0.89659 0.91410 0.93689 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.64 8.50 127.77 1.09 5.73 16 2 N -0.61 -27.75 2.57 -696.14 -1.79 -29.53 16 3 C -0.26 -14.11 9.87 84.03 0.83 -13.28 16 4 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 5 C -0.02 -0.89 5.29 84.86 0.45 -0.44 16 6 N -0.94 -57.87 13.97 21.65 0.30 -57.56 16 7 Si 0.93 47.72 25.08 68.60 1.72 49.44 16 8 H -0.27 -13.39 6.64 99.48 0.66 -12.73 16 9 H -0.31 -16.01 7.11 99.48 0.71 -15.31 16 10 H -0.27 -14.06 7.11 99.48 0.71 -13.36 16 11 C 0.16 5.90 3.44 46.18 0.16 6.06 16 12 H 0.08 3.10 7.95 -2.39 -0.02 3.08 16 13 C -0.14 -3.47 6.66 31.99 0.21 -3.26 16 14 C 0.10 1.90 6.68 86.86 0.58 2.49 16 15 N -0.61 -17.82 3.34 -811.12 -2.71 -20.53 16 16 C 0.52 16.46 7.93 87.66 0.70 17.15 16 17 O -0.59 -25.98 16.84 16.01 0.27 -25.71 16 18 C 0.06 1.20 5.42 71.23 0.39 1.59 16 19 O -0.40 -10.56 9.86 -126.45 -1.25 -11.81 16 20 C 0.05 0.76 5.47 71.98 0.39 1.16 16 21 C 0.07 1.23 3.81 31.06 0.12 1.35 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 C -0.14 -1.12 6.56 31.91 0.21 -0.91 16 24 C -0.15 -1.23 7.16 32.10 0.23 -1.00 16 25 C 0.03 0.49 7.78 72.65 0.57 1.05 16 26 O -0.41 -9.67 11.00 -146.64 -1.61 -11.29 16 27 C 0.09 3.39 6.43 86.68 0.56 3.95 16 28 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.02 0.89 2.74 -2.39 -0.01 0.89 16 30 H 0.06 2.13 6.17 -2.39 -0.01 2.11 16 31 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.07 1.91 7.34 -2.38 -0.02 1.89 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.11 1.25 7.47 -2.38 -0.02 1.24 16 36 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.11 1.46 7.85 -2.39 -0.02 1.45 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.46 7.85 -2.39 -0.02 0.44 16 41 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 44 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.04 1.89 6.02 -2.39 -0.01 1.88 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -83.02 370.10 2.31 -80.71 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 0.90 Total: 4.66 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 6.47 Total: 21.62 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -4.19 Total: -107.62 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -2.59 Total: -48.81 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.72 Total: 49.44 kcal Total: -83.02 2.31 -80.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194502199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.807 kcal (2) G-P(sol) polarization free energy of solvation -83.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds