Wall clock time and date at job start Fri Apr 10 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20759 * 120.00277 * 2 1 4 4 C 1.50698 * 119.99996 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.47184 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47055 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00218 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00109 * 179.97438 * 7 6 5 10 10 C 1.47505 * 118.75449 * 359.73914 * 9 7 6 11 11 C 1.53952 * 110.82116 * 138.24947 * 10 9 7 12 12 C 1.51537 * 109.72460 * 320.30313 * 11 10 9 13 13 O 1.42160 * 108.76347 * 91.29519 * 12 11 10 14 14 C 1.38008 * 119.43796 * 272.78076 * 13 12 11 15 15 H 1.09003 * 109.47065 * 303.42431 * 14 13 12 16 16 C 1.53000 * 109.46926 * 183.43037 * 14 13 12 17 17 N 1.46499 * 109.47152 * 64.99077 * 16 14 13 18 18 C 1.36936 * 119.99963 * 180.02562 * 17 16 14 19 19 H 1.07993 * 119.99929 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99821 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99849 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47304 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47383 * 119.99865 * 22 20 18 25 25 H 1.48499 * 109.47024 * 240.00125 * 22 20 18 26 26 C 1.45114 * 118.75751 * 179.97438 * 9 7 6 27 27 H 1.08994 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46771 * 299.99511 * 1 2 3 29 29 H 1.09001 * 109.46892 * 59.99703 * 1 2 3 30 30 H 1.09001 * 109.47612 * 60.00091 * 4 2 1 31 31 H 1.09001 * 109.47122 * 299.99922 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99404 * 5 4 2 33 33 H 1.08993 * 109.46955 * 59.99842 * 5 4 2 34 34 H 1.09001 * 109.47289 * 299.99953 * 6 5 4 35 35 H 1.09004 * 109.47261 * 59.99697 * 6 5 4 36 36 H 1.08998 * 109.16883 * 258.76483 * 10 9 7 37 37 H 1.09008 * 109.16902 * 17.97031 * 10 9 7 38 38 H 1.08996 * 109.46270 * 200.17870 * 11 10 9 39 39 H 1.08997 * 109.28144 * 80.31717 * 11 10 9 40 40 H 1.08996 * 109.59306 * 331.51022 * 12 11 10 41 41 H 1.09003 * 109.58545 * 211.07669 * 12 11 10 42 42 H 1.09002 * 109.46846 * 184.98705 * 16 14 13 43 43 H 1.08992 * 109.46820 * 304.98751 * 16 14 13 44 44 H 0.97006 * 119.99497 * 359.97438 * 17 16 14 45 45 H 0.97002 * 119.99684 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.46157 * 29.32142 * 26 9 7 47 47 H 1.09005 * 109.45850 * 149.27947 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5298 -2.3505 0.0002 7 6 6.0113 -2.0752 0.0004 8 8 6.4157 -0.9317 0.0009 9 7 6.8872 -3.0996 0.0009 10 6 6.3655 -4.4793 0.0073 11 6 7.1729 -5.3741 -0.9505 12 6 7.5057 -4.6034 -2.2121 13 8 8.7648 -3.9663 -2.0400 14 6 8.8185 -2.7161 -1.4578 15 1 8.1911 -2.0256 -2.0215 16 6 10.2633 -2.2127 -1.4631 17 7 10.7069 -2.0161 -2.8454 18 6 11.9752 -1.5672 -3.1002 19 1 12.6483 -1.3576 -2.2821 20 6 12.3956 -1.3814 -4.4100 21 7 11.5753 -1.6373 -5.4070 22 14 14.1260 -0.7697 -4.7577 23 1 14.8435 -0.5586 -3.4747 24 1 14.8528 -1.7766 -5.5720 25 1 14.0571 0.5131 -5.5026 26 6 8.3078 -2.8035 0.0005 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9972 -1.8763 -0.8908 31 1 1.9972 -1.8771 0.8892 32 1 4.0285 -0.4534 -0.8894 33 1 4.0277 -0.4546 0.8906 34 1 4.2660 -2.9223 0.8900 35 1 4.2668 -2.9219 -0.8900 36 1 6.4298 -4.8816 1.0183 37 1 5.3217 -4.4687 -0.3069 38 1 6.5843 -6.2547 -1.2078 39 1 8.0958 -5.6847 -0.4608 40 1 6.7377 -3.8517 -2.3944 41 1 7.5560 -5.2900 -3.0572 42 1 10.3203 -1.2664 -0.9252 43 1 10.9054 -2.9466 -0.9763 44 1 10.1023 -2.2047 -3.5802 45 1 11.8690 -1.5071 -6.3223 46 1 8.4806 -1.8518 0.5031 47 1 8.8437 -3.5940 0.5260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199864768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:31 Heat of formation + Delta-G solvation = -109.296458 kcal Electronic energy + Delta-G solvation = -26481.203952 eV Core-core repulsion = 22664.577481 eV Total energy + Delta-G solvation = -3816.626471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.62380 -39.74824 -38.49848 -35.62705 -34.71251 -34.47209 -32.80934 -31.18447 -30.86342 -29.37725 -27.90646 -26.57264 -25.04756 -23.18208 -22.02580 -21.64158 -20.90269 -19.93429 -18.93861 -17.45872 -17.10063 -16.56410 -16.46085 -16.34927 -15.90348 -15.72609 -15.28167 -14.98901 -14.54626 -14.35684 -14.15430 -13.67769 -13.54583 -13.08982 -13.02561 -12.92002 -12.71434 -12.60054 -12.31635 -12.18812 -12.13385 -11.97060 -11.79439 -11.51854 -11.30541 -11.05440 -10.94434 -10.77239 -10.75235 -10.22917 -10.03238 -9.94746 -9.71519 -9.61457 -9.37713 -8.79523 -8.52557 -6.80438 -5.65706 -2.93626 1.65644 2.57191 2.86464 3.50583 3.55495 3.58228 3.67968 3.98289 4.25114 4.55662 4.59540 4.62717 4.66651 4.69595 4.73693 4.86638 4.91831 4.95064 5.09418 5.15051 5.18710 5.27789 5.28161 5.36489 5.40504 5.46357 5.51648 5.60704 5.65267 5.67681 5.84137 5.86546 5.98245 6.02915 6.11830 6.13149 6.37916 6.53857 6.71319 6.83174 7.21041 7.24181 7.79073 8.03770 8.14268 8.52650 9.64099 10.22644 10.58559 11.57444 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002756 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.321574 B =10158.574661 C =11217.640036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.452 6.452 4 C -0.173 4.173 5 C -0.100 4.100 6 C -0.139 4.139 7 C 0.503 3.497 8 O -0.528 6.528 9 N -0.612 5.612 10 C 0.106 3.894 11 C -0.167 4.167 12 C 0.074 3.926 13 O -0.369 6.369 14 C 0.089 3.911 15 H 0.052 0.948 16 C 0.166 3.834 17 N -0.726 5.726 18 C -0.235 4.235 19 H 0.071 0.929 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.081 3.919 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.035 0.965 43 H 0.027 0.973 44 H 0.386 0.614 45 H 0.253 0.747 46 H 0.093 0.907 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.578 -8.943 14.111 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.225 3.775 3 O -0.325 6.325 4 C -0.210 4.210 5 C -0.138 4.138 6 C -0.179 4.179 7 C 0.291 3.709 8 O -0.403 6.403 9 N -0.346 5.346 10 C -0.017 4.017 11 C -0.205 4.205 12 C -0.003 4.003 13 O -0.287 6.287 14 C 0.029 3.971 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.043 4.043 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.220 0.780 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.694 -7.805 14.104 28.657 hybrid contribution 0.322 0.047 -0.383 0.503 sum -23.372 -7.758 13.721 28.190 Atomic orbital electron populations 1.22276 0.94616 1.04500 1.04781 1.24647 0.91874 0.90450 0.70572 1.90471 1.71842 1.35210 1.35016 1.22200 0.96595 0.97620 1.04586 1.21184 0.91571 0.95943 1.05065 1.21730 0.92094 1.00030 1.04034 1.20786 0.88823 0.85045 0.76273 1.90761 1.80092 1.21021 1.48437 1.47978 1.06711 1.06164 1.73770 1.22068 0.98218 0.81407 0.99983 1.22580 1.01621 0.98799 0.97541 1.22098 0.86461 0.95531 0.96212 1.86434 1.29346 1.32447 1.80436 1.22258 0.99047 0.84721 0.91076 0.93049 1.20611 0.89205 0.96766 0.89648 1.42239 1.14120 1.79852 1.00815 1.19284 0.89845 1.35653 0.91846 0.91115 1.24743 0.98198 1.02680 0.95589 1.69692 1.35000 1.55342 0.98151 0.86101 0.84286 0.78002 0.77729 1.20571 1.21944 1.21947 1.22396 0.79594 1.03078 0.99211 0.90069 0.89150 0.89085 0.88252 0.88356 0.90404 0.90570 0.88974 0.88868 0.91501 0.89945 0.89750 0.89980 0.93582 0.89319 0.94761 0.95510 0.77976 0.93690 0.88899 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.89 10.33 36.00 0.37 -0.52 16 2 C 0.35 2.76 7.27 -29.04 -0.21 2.55 16 3 O -0.45 -5.89 16.72 6.00 0.10 -5.79 16 4 C -0.17 -0.99 5.55 -27.88 -0.15 -1.15 16 5 C -0.10 -0.97 3.79 -26.73 -0.10 -1.07 16 6 C -0.14 -1.15 4.03 -27.89 -0.11 -1.26 16 7 C 0.50 6.66 7.63 -10.98 -0.08 6.57 16 8 O -0.53 -9.54 15.41 5.56 0.09 -9.46 16 9 N -0.61 -7.44 2.18 -172.27 -0.38 -7.81 16 10 C 0.11 0.85 6.04 -3.00 -0.02 0.84 16 11 C -0.17 -1.52 5.79 -26.97 -0.16 -1.68 16 12 C 0.07 0.96 6.38 36.42 0.23 1.19 16 13 O -0.37 -6.65 9.38 -26.51 -0.25 -6.90 16 14 C 0.09 1.64 2.67 -25.81 -0.07 1.58 16 15 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.17 3.65 5.92 -4.04 -0.02 3.63 16 17 N -0.73 -19.94 5.54 -59.91 -0.33 -20.27 16 18 C -0.23 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -29.61 13.06 55.49 0.72 -28.88 16 22 Si 0.91 23.37 29.55 -169.99 -5.02 18.34 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 26 C 0.08 1.19 4.86 -3.86 -0.02 1.17 16 27 H 0.08 0.15 8.00 -51.93 -0.42 -0.26 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 34 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 35 H 0.09 0.59 7.42 -51.93 -0.39 0.20 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.46 5.88 -51.92 -0.31 0.15 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 40 H 0.05 0.60 7.41 -51.93 -0.38 0.22 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.39 11.28 7.65 -40.82 -0.31 10.97 16 45 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.09 1.48 7.27 -51.93 -0.38 1.11 16 47 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -38.44 380.38 -7.97 -46.41 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.05 Total: 4.48 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.59 Total: 4.15 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.02 Total: -56.97 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.44 -7.97 -46.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199864768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.882 kcal (2) G-P(sol) polarization free energy of solvation -38.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds