Wall clock time and date at job start Fri Apr 10 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20759 * 120.00277 * 2 1 4 4 C 1.50698 * 119.99996 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.47184 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47055 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00218 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00109 * 179.97438 * 7 6 5 10 10 C 1.47505 * 118.75449 * 359.73914 * 9 7 6 11 11 C 1.53952 * 110.82116 * 138.24947 * 10 9 7 12 12 C 1.51537 * 109.72460 * 320.30313 * 11 10 9 13 13 O 1.42160 * 108.76347 * 91.29519 * 12 11 10 14 14 C 1.38008 * 119.43796 * 272.78076 * 13 12 11 15 15 H 1.09003 * 109.47065 * 303.42431 * 14 13 12 16 16 C 1.53000 * 109.46926 * 183.43037 * 14 13 12 17 17 N 1.46499 * 109.47152 * 64.99077 * 16 14 13 18 18 C 1.36936 * 119.99963 * 180.02562 * 17 16 14 19 19 H 1.07993 * 119.99929 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99821 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99849 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47304 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47383 * 119.99865 * 22 20 18 25 25 H 1.48499 * 109.47024 * 240.00125 * 22 20 18 26 26 C 1.45114 * 118.75751 * 179.97438 * 9 7 6 27 27 H 1.08994 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46771 * 299.99511 * 1 2 3 29 29 H 1.09001 * 109.46892 * 59.99703 * 1 2 3 30 30 H 1.09001 * 109.47612 * 60.00091 * 4 2 1 31 31 H 1.09001 * 109.47122 * 299.99922 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99404 * 5 4 2 33 33 H 1.08993 * 109.46955 * 59.99842 * 5 4 2 34 34 H 1.09001 * 109.47289 * 299.99953 * 6 5 4 35 35 H 1.09004 * 109.47261 * 59.99697 * 6 5 4 36 36 H 1.08998 * 109.16883 * 258.76483 * 10 9 7 37 37 H 1.09008 * 109.16902 * 17.97031 * 10 9 7 38 38 H 1.08996 * 109.46270 * 200.17870 * 11 10 9 39 39 H 1.08997 * 109.28144 * 80.31717 * 11 10 9 40 40 H 1.08996 * 109.59306 * 331.51022 * 12 11 10 41 41 H 1.09003 * 109.58545 * 211.07669 * 12 11 10 42 42 H 1.09002 * 109.46846 * 184.98705 * 16 14 13 43 43 H 1.08992 * 109.46820 * 304.98751 * 16 14 13 44 44 H 0.97006 * 119.99497 * 359.97438 * 17 16 14 45 45 H 0.97002 * 119.99684 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.46157 * 29.32142 * 26 9 7 47 47 H 1.09005 * 109.45850 * 149.27947 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5298 -2.3505 0.0002 7 6 6.0113 -2.0752 0.0004 8 8 6.4157 -0.9317 0.0009 9 7 6.8872 -3.0996 0.0009 10 6 6.3655 -4.4793 0.0073 11 6 7.1729 -5.3741 -0.9505 12 6 7.5057 -4.6034 -2.2121 13 8 8.7648 -3.9663 -2.0400 14 6 8.8185 -2.7161 -1.4578 15 1 8.1911 -2.0256 -2.0215 16 6 10.2633 -2.2127 -1.4631 17 7 10.7069 -2.0161 -2.8454 18 6 11.9752 -1.5672 -3.1002 19 1 12.6483 -1.3576 -2.2821 20 6 12.3956 -1.3814 -4.4100 21 7 11.5753 -1.6373 -5.4070 22 14 14.1260 -0.7697 -4.7577 23 1 14.8435 -0.5586 -3.4747 24 1 14.8528 -1.7766 -5.5720 25 1 14.0571 0.5131 -5.5026 26 6 8.3078 -2.8035 0.0005 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9972 -1.8763 -0.8908 31 1 1.9972 -1.8771 0.8892 32 1 4.0285 -0.4534 -0.8894 33 1 4.0277 -0.4546 0.8906 34 1 4.2660 -2.9223 0.8900 35 1 4.2668 -2.9219 -0.8900 36 1 6.4298 -4.8816 1.0183 37 1 5.3217 -4.4687 -0.3069 38 1 6.5843 -6.2547 -1.2078 39 1 8.0958 -5.6847 -0.4608 40 1 6.7377 -3.8517 -2.3944 41 1 7.5560 -5.2900 -3.0572 42 1 10.3203 -1.2664 -0.9252 43 1 10.9054 -2.9466 -0.9763 44 1 10.1023 -2.2047 -3.5802 45 1 11.8690 -1.5071 -6.3223 46 1 8.4806 -1.8518 0.5031 47 1 8.8437 -3.5940 0.5260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199864768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:31 Heat of formation + Delta-G solvation = -137.500004 kcal Electronic energy + Delta-G solvation = -26482.426949 eV Core-core repulsion = 22664.577481 eV Total energy + Delta-G solvation = -3817.849468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68127 -40.47347 -39.70928 -36.91705 -36.25530 -35.37997 -34.28532 -32.66699 -31.76429 -30.50488 -28.96864 -27.54091 -26.58237 -24.73979 -23.28607 -22.55895 -22.30317 -20.52894 -19.86049 -19.29522 -18.38404 -17.75272 -17.56574 -17.25338 -16.75977 -16.67983 -16.40178 -16.10203 -15.86609 -15.42888 -15.17510 -15.13849 -14.81931 -14.60150 -14.37245 -13.92708 -13.66204 -13.40392 -13.31374 -13.12727 -13.08369 -12.81636 -12.77212 -12.72497 -12.59991 -12.44808 -12.24539 -12.08095 -11.98142 -11.83422 -11.72438 -11.47404 -11.02162 -10.90478 -10.56464 -10.50801 -9.63934 -9.04963 -7.97067 -5.27285 1.08014 1.44454 1.47196 1.57221 1.58781 1.95351 2.54075 2.71583 3.17753 3.36359 3.50020 3.63034 3.87148 3.95910 4.02575 4.04324 4.05522 4.11004 4.16612 4.30532 4.34945 4.43937 4.50544 4.55577 4.55600 4.62074 4.69347 4.71925 4.78389 4.80220 4.86011 4.88686 4.92776 5.06904 5.14532 5.15561 5.22000 5.25816 5.35855 5.44518 5.55298 6.23597 6.31553 6.66799 6.74397 7.16438 7.29437 8.02855 8.28606 9.27230 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002756 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.321574 B =10158.574661 C =11217.640036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.345 3.655 3 O -0.521 6.521 4 C -0.164 4.164 5 C -0.100 4.100 6 C -0.126 4.126 7 C 0.490 3.510 8 O -0.592 6.592 9 N -0.611 5.611 10 C 0.099 3.901 11 C -0.157 4.157 12 C 0.062 3.938 13 O -0.398 6.398 14 C 0.107 3.893 15 H 0.015 0.985 16 C 0.162 3.838 17 N -0.741 5.741 18 C -0.248 4.248 19 H 0.078 0.922 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.981 3.019 23 H -0.264 1.264 24 H -0.289 1.289 25 H -0.292 1.292 26 C 0.094 3.906 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.095 0.905 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.072 0.928 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.688 -12.163 15.611 33.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.225 3.775 3 O -0.399 6.399 4 C -0.201 4.201 5 C -0.138 4.138 6 C -0.165 4.165 7 C 0.281 3.719 8 O -0.473 6.473 9 N -0.343 5.343 10 C -0.021 4.021 11 C -0.195 4.195 12 C -0.014 4.014 13 O -0.317 6.317 14 C 0.047 3.953 15 H 0.033 0.967 16 C 0.035 3.965 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.096 0.904 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.810 3.190 23 H -0.188 1.188 24 H -0.216 1.216 25 H -0.220 1.220 26 C -0.031 4.031 27 H 0.135 0.865 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.204 0.796 45 H 0.061 0.939 46 H 0.091 0.909 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.843 -11.100 15.653 32.188 hybrid contribution 0.928 0.988 -0.853 1.602 sum -24.914 -10.112 14.800 30.692 Atomic orbital electron populations 1.22298 0.91613 1.06897 1.04811 1.25504 0.93791 0.90341 0.67889 1.90468 1.73393 1.37565 1.38475 1.22264 0.92823 0.97073 1.07903 1.21098 0.95097 0.96161 1.01455 1.21802 0.87486 0.99701 1.07498 1.21852 0.91127 0.84214 0.74731 1.90739 1.81391 1.23802 1.51339 1.48134 1.05251 1.08121 1.72801 1.22488 0.99652 0.78468 1.01489 1.22504 1.02071 0.99627 0.95274 1.22442 0.84337 0.95549 0.99039 1.86350 1.32641 1.31775 1.80969 1.21818 0.95886 0.84400 0.93211 0.96736 1.20755 0.91901 0.96909 0.86965 1.42443 1.13480 1.79879 1.02503 1.19727 0.90777 1.35094 0.92333 0.90399 1.25690 1.02677 1.03444 0.95376 1.69865 1.37154 1.56838 0.98380 0.84959 0.79108 0.77031 0.77951 1.18848 1.21574 1.21963 1.22032 0.82014 1.02935 0.96133 0.86475 0.88857 0.89168 0.84972 0.84341 0.94805 0.93830 0.84520 0.85646 0.88654 0.86218 0.85788 0.91048 0.93925 0.88741 0.95078 0.94779 0.79581 0.93948 0.90914 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 10.33 71.24 0.74 -0.52 16 2 C 0.34 5.16 7.27 29.10 0.21 5.37 16 3 O -0.52 -14.56 16.72 -1.45 -0.02 -14.58 16 4 C -0.16 -1.38 5.55 29.85 0.17 -1.21 16 5 C -0.10 -1.91 3.79 30.60 0.12 -1.79 16 6 C -0.13 -1.68 4.03 29.85 0.12 -1.56 16 7 C 0.49 12.75 7.63 87.65 0.67 13.42 16 8 O -0.59 -22.96 15.41 -3.03 -0.05 -23.00 16 9 N -0.61 -13.85 2.18 -817.33 -1.78 -15.64 16 10 C 0.10 1.13 6.04 86.51 0.52 1.66 16 11 C -0.16 -2.26 5.79 30.44 0.18 -2.08 16 12 C 0.06 1.54 6.38 71.50 0.46 1.99 16 13 O -0.40 -14.61 9.38 -117.78 -1.11 -15.71 16 14 C 0.11 4.14 2.67 31.19 0.08 4.22 16 15 H 0.01 0.66 8.14 -2.39 -0.02 0.65 16 16 C 0.16 7.44 5.92 86.38 0.51 7.96 16 17 N -0.74 -42.44 5.54 -343.46 -1.90 -44.34 16 18 C -0.25 -15.04 9.99 84.03 0.84 -14.20 16 19 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 20 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 21 N -0.97 -63.44 13.06 21.65 0.28 -63.16 16 22 Si 0.98 48.80 29.55 68.60 2.03 50.82 16 23 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 26 C 0.09 2.79 4.86 87.24 0.42 3.22 16 27 H 0.12 -0.10 8.00 -2.39 -0.02 -0.12 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.03 0.92 8.06 -2.39 -0.02 0.90 16 33 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 34 H 0.14 0.69 8.03 -2.39 -0.02 0.67 16 35 H 0.13 0.93 7.42 -2.38 -0.02 0.92 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.12 0.52 5.88 -2.38 -0.01 0.51 16 38 H 0.12 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.24 8.01 -2.39 -0.02 1.22 16 40 H 0.04 1.07 7.41 -2.39 -0.02 1.05 16 41 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.03 1.52 8.14 -2.39 -0.02 1.51 16 44 H 0.37 22.95 7.65 -92.70 -0.71 22.24 16 45 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 46 H 0.07 2.46 7.27 -2.39 -0.02 2.44 16 47 H 0.10 2.60 8.11 -2.38 -0.02 2.58 16 Total: -1.00 -93.75 380.38 3.19 -90.57 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.24 Total: 23.03 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.50 Total: 12.01 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -3.40 Total: -123.13 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -1.18 Total: -53.30 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.82 kcal Total: -93.75 3.19 -90.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199864768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.933 kcal (2) G-P(sol) polarization free energy of solvation -93.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds