Wall clock time and date at job start Fri Apr 10 2020 18:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50704 * 110.75079 * 62.01973 * 4 3 2 6 6 O 1.21283 * 120.00094 * 120.70614 * 5 4 3 7 7 N 1.34775 * 119.99940 * 300.70135 * 5 4 3 8 8 C 1.46505 * 119.99910 * 179.97438 * 7 5 4 9 9 H 1.08999 * 110.88311 * 31.11987 * 8 7 5 10 10 C 1.54909 * 111.00488 * 267.19776 * 8 7 5 11 11 N 1.47427 * 104.83148 * 204.91781 * 10 8 7 12 12 C 1.36932 * 125.64471 * 204.10623 * 11 10 8 13 13 H 1.08007 * 119.99852 * 180.02562 * 12 11 10 14 14 C 1.38809 * 120.00173 * 0.02562 * 12 11 10 15 15 N 1.31620 * 120.00057 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99833 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47311 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46969 * 119.99813 * 16 14 12 19 19 H 1.48493 * 109.47091 * 239.99716 * 16 14 12 20 20 C 1.47025 * 108.70141 * 24.12501 * 11 10 8 21 21 C 1.54325 * 107.27354 * 358.94472 * 20 11 10 22 22 H 1.09000 * 110.86981 * 96.23769 * 21 20 11 23 23 C 1.52997 * 110.71815 * 219.44186 * 21 20 11 24 24 C 1.55305 * 110.85133 * 185.71579 * 4 3 2 25 25 C 1.54944 * 100.94442 * 152.32382 * 24 4 3 26 26 O 1.43652 * 105.13644 * 323.55771 * 25 24 4 27 27 C 1.43241 * 109.97008 * 24.42510 * 26 25 24 28 28 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 29 29 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 30 30 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 32 32 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 33 33 H 0.96999 * 120.00364 * 359.97438 * 7 5 4 34 34 H 1.08999 * 110.36572 * 323.75477 * 10 8 7 35 35 H 1.08991 * 110.36624 * 86.07379 * 10 8 7 36 36 H 0.97003 * 119.99596 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.87862 * 239.52253 * 20 11 10 38 38 H 1.09001 * 110.00319 * 118.43255 * 20 11 10 39 39 H 1.08999 * 109.47178 * 173.51835 * 23 21 20 40 40 H 1.08996 * 109.47024 * 293.52298 * 23 21 20 41 41 H 1.09002 * 109.47075 * 53.52150 * 23 21 20 42 42 H 1.09001 * 111.12534 * 270.24561 * 24 4 3 43 43 H 1.09001 * 111.12365 * 34.40753 * 24 4 3 44 44 H 1.08996 * 110.31307 * 204.64572 * 25 24 4 45 45 H 1.08995 * 110.31185 * 82.47014 * 25 24 4 46 46 H 1.08992 * 109.83062 * 238.77543 * 27 26 25 47 47 H 1.09005 * 109.90119 * 117.84572 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0150 0.4836 -1.2455 6 8 4.7779 1.0458 -2.0024 7 7 3.5963 -0.7682 -1.5177 8 6 4.0620 -1.4495 -2.7281 9 1 5.0677 -1.1243 -2.9945 10 6 3.0769 -1.2293 -3.9032 11 7 3.2903 -2.3831 -4.7958 12 6 3.0182 -2.4152 -6.1374 13 1 3.2103 -3.3131 -6.7061 14 6 2.4954 -1.2937 -6.7666 15 7 2.2608 -0.1997 -6.0735 16 14 2.1249 -1.3373 -8.5970 17 1 2.4747 -2.6739 -9.1412 18 1 0.6793 -1.0772 -8.8157 19 1 2.9256 -0.2956 -9.2890 20 6 3.8431 -3.4937 -4.0067 21 6 4.0029 -2.9905 -2.5566 22 1 3.1451 -3.2782 -1.9489 23 6 5.3010 -3.5168 -1.9410 24 6 4.2006 2.5806 0.1439 25 6 5.5387 2.1996 0.8260 26 8 5.2112 1.1239 1.7199 27 6 4.0293 0.4536 1.2663 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 2.9865 -1.2181 -0.9121 34 1 2.0495 -1.2160 -3.5394 35 1 3.3082 -0.2997 -4.4229 36 1 1.8958 0.5841 -6.5133 37 1 4.8139 -3.7855 -4.4070 38 1 3.1614 -4.3439 -4.0310 39 1 5.4510 -3.0592 -0.9631 40 1 5.2375 -4.5992 -1.8298 41 1 6.1391 -3.2668 -2.5915 42 1 4.3725 3.0366 -0.8311 43 1 3.6066 3.2346 0.7822 44 1 5.9339 3.0483 1.3842 45 1 6.2614 1.8660 0.0814 46 1 3.2618 0.4938 2.0392 47 1 4.2599 -0.5847 1.0280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208189543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:36 Heat of formation + Delta-G solvation = -99.213459 kcal Electronic energy + Delta-G solvation = -28273.443217 eV Core-core repulsion = 24457.253978 eV Total energy + Delta-G solvation = -3816.189239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73087 -38.55041 -37.75666 -37.20941 -33.85353 -33.14861 -32.48820 -30.32263 -29.80912 -27.68789 -27.12692 -25.60570 -25.33770 -23.93210 -22.55287 -22.37506 -20.13939 -19.96688 -19.09869 -17.55446 -16.88723 -16.54063 -16.38438 -15.83809 -15.64864 -15.26388 -15.02880 -14.85965 -14.37067 -13.97492 -13.77902 -13.53907 -13.16193 -12.90856 -12.83254 -12.57033 -12.44915 -12.17789 -11.89044 -11.73417 -11.61455 -11.48918 -11.35269 -11.15942 -11.09690 -10.96771 -10.78355 -10.55741 -10.29907 -9.92652 -9.88706 -9.75089 -9.70947 -9.63137 -9.30496 -8.62586 -8.32267 -6.80123 -5.60827 -3.04043 2.87630 3.41376 3.43231 3.46929 3.49721 3.55630 3.80773 4.20353 4.51289 4.64676 4.78144 4.92072 5.04070 5.11562 5.17266 5.20210 5.26888 5.32500 5.36964 5.47104 5.51632 5.55780 5.61789 5.62462 5.66251 5.68205 5.81479 5.82698 5.96842 6.03731 6.11407 6.22587 6.30691 6.43588 6.55864 6.71363 6.83038 6.89385 6.92126 7.04337 7.53278 7.65638 7.90761 8.04958 8.40931 8.68076 9.24597 9.85908 10.49798 11.41938 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.004283 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.094570 B = 6535.756712 C = 6899.064737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.390 6.390 3 C 0.081 3.919 4 C -0.115 4.115 5 C 0.529 3.471 6 O -0.536 6.536 7 N -0.698 5.698 8 C 0.118 3.882 9 H 0.091 0.909 10 C 0.152 3.848 11 N -0.603 5.603 12 C -0.223 4.223 13 H 0.079 0.921 14 C -0.011 4.011 15 N -0.918 5.918 16 Si 0.914 3.086 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.142 3.858 21 C -0.111 4.111 22 H 0.073 0.927 23 C -0.137 4.137 24 C -0.132 4.132 25 C 0.053 3.947 26 O -0.385 6.385 27 C 0.073 3.927 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.013 0.987 35 H 0.110 0.890 36 H 0.251 0.749 37 H 0.027 0.973 38 H 0.023 0.977 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 2.423 17.583 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.309 6.309 3 C 0.004 3.996 4 C -0.118 4.118 5 C 0.313 3.687 6 O -0.413 6.413 7 N -0.348 5.348 8 C 0.013 3.987 9 H 0.109 0.891 10 C 0.026 3.974 11 N -0.330 5.330 12 C -0.352 4.352 13 H 0.097 0.903 14 C -0.206 4.206 15 N -0.567 5.567 16 Si 0.744 3.256 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.015 3.985 21 C -0.131 4.131 22 H 0.092 0.908 23 C -0.195 4.195 24 C -0.170 4.170 25 C -0.023 4.023 26 O -0.304 6.304 27 C -0.004 4.004 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.031 0.969 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.256 2.699 17.026 17.241 hybrid contribution -1.083 0.011 -0.882 1.397 sum -0.827 2.710 16.144 16.391 Atomic orbital electron populations 1.22751 0.80052 1.03204 1.00098 1.87727 1.20524 1.27251 1.95437 1.22371 0.90056 0.85609 1.01537 1.22439 0.95808 0.97787 0.95797 1.19743 0.81025 0.82065 0.85903 1.90706 1.35793 1.65283 1.49533 1.45868 1.48309 1.15150 1.25518 1.22701 1.00443 0.90072 0.85497 0.89146 1.22190 0.93275 0.94512 0.87470 1.44408 1.74752 1.08903 1.04900 1.19121 1.35406 0.98173 0.82470 0.90317 1.24807 1.01460 0.96078 0.98287 1.69833 1.50297 1.02859 1.33676 0.86008 0.77533 0.77315 0.84704 1.20506 1.21834 1.21724 1.21332 0.96581 0.91832 0.88718 1.22420 0.97761 0.95303 0.97592 0.90845 1.21737 0.97234 1.00254 1.00228 1.23163 0.96041 0.94224 1.03532 1.23405 0.96629 0.89649 0.92616 1.88375 1.44547 1.47278 1.50228 1.23084 0.87543 0.96313 0.93426 0.94142 0.93517 0.89268 0.91812 0.91959 0.76127 0.96897 0.87271 0.93847 0.95529 0.95943 0.93119 0.92907 0.92527 0.87827 0.89709 0.89471 0.91194 0.90222 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 11.01 101.05 1.11 1.45 16 2 O -0.39 -4.61 8.15 -35.23 -0.29 -4.89 16 3 C 0.08 0.91 4.72 37.16 0.18 1.09 16 4 C -0.11 -1.47 0.64 -153.71 -0.10 -1.57 16 5 C 0.53 9.14 6.31 -10.98 -0.07 9.07 16 6 O -0.54 -11.33 15.12 5.56 0.08 -11.25 16 7 N -0.70 -11.91 4.70 -51.73 -0.24 -12.16 16 8 C 0.12 2.38 2.87 -65.78 -0.19 2.20 16 9 H 0.09 2.02 7.44 -51.93 -0.39 1.64 16 10 C 0.15 3.82 5.58 -2.53 -0.01 3.81 16 11 N -0.60 -15.84 3.39 -170.07 -0.58 -16.41 16 12 C -0.22 -6.35 10.27 -15.06 -0.15 -6.51 16 13 H 0.08 2.16 7.83 -52.48 -0.41 1.74 16 14 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 15 N -0.92 -27.55 10.09 55.49 0.56 -26.99 16 16 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 C 0.14 3.00 6.84 -3.06 -0.02 2.98 16 21 C -0.11 -1.95 3.20 -88.79 -0.28 -2.24 16 22 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16 23 C -0.14 -1.99 9.16 37.16 0.34 -1.65 16 24 C -0.13 -1.51 5.84 -24.48 -0.14 -1.65 16 25 C 0.05 0.63 7.55 38.18 0.29 0.92 16 26 O -0.38 -5.10 11.36 -35.23 -0.40 -5.50 16 27 C 0.07 0.88 6.72 37.88 0.25 1.13 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.40 6.09 6.61 -40.82 -0.27 5.82 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.11 3.23 5.87 -51.93 -0.31 2.92 16 36 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 42 H 0.10 1.34 7.32 -51.93 -0.38 0.96 16 43 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 46 H 0.08 0.80 7.81 -51.93 -0.41 0.40 16 47 H 0.07 0.91 7.66 -51.93 -0.40 0.52 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -33.36 370.01 -7.20 -40.56 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.99 Total: 5.00 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 1.10 Total: 8.61 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.26 Total: -55.56 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.60 Total: -21.64 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.36 -7.20 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208189543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.657 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds