Wall clock time and date at job start Fri Apr 10 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.91988 * 2 1 4 4 C 1.55392 * 111.18539 * 235.94361 * 2 1 3 5 5 N 1.47431 * 104.87127 * 204.98146 * 4 2 1 6 6 C 1.36931 * 125.64700 * 204.16955 * 5 4 2 7 7 H 1.07998 * 120.00396 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99902 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99909 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99845 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47355 * 60.00007 * 10 8 6 12 12 H 1.48501 * 109.46905 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47337 * 299.99861 * 10 8 6 14 14 C 1.47019 * 108.70142 * 24.13359 * 5 4 2 15 15 C 1.54321 * 107.27531 * 358.94050 * 14 5 4 16 16 H 1.09002 * 110.72109 * 96.17040 * 15 14 5 17 17 N 1.46505 * 110.72218 * 219.26939 * 15 14 5 18 18 C 1.34779 * 119.99500 * 271.15678 * 17 15 14 19 19 O 1.21279 * 120.00309 * 359.97438 * 18 17 15 20 20 C 1.50704 * 119.99643 * 180.02562 * 18 17 15 21 21 O 1.42898 * 109.46644 * 179.97438 * 20 18 17 22 22 C 1.42906 * 113.99930 * 179.97438 * 21 20 18 23 23 C 1.52990 * 109.47544 * 180.02562 * 22 21 20 24 24 H 1.09001 * 110.43539 * 303.91301 * 23 22 21 25 25 C 1.54806 * 110.48968 * 181.22154 * 23 22 21 26 26 C 1.55001 * 102.09159 * 220.44305 * 25 23 22 27 27 O 1.44376 * 103.48845 * 37.02543 * 26 25 23 28 28 C 1.43738 * 106.97741 * 319.93671 * 27 26 25 29 29 H 1.08998 * 109.47366 * 296.09964 * 1 2 3 30 30 H 1.09006 * 109.46883 * 56.09163 * 1 2 3 31 31 H 1.08999 * 109.47315 * 176.09108 * 1 2 3 32 32 H 1.08999 * 110.34334 * 86.13843 * 4 2 1 33 33 H 1.08998 * 110.44545 * 323.87993 * 4 2 1 34 34 H 0.96994 * 119.99831 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.88251 * 239.51790 * 14 5 4 36 36 H 1.09004 * 109.88394 * 118.35703 * 14 5 4 37 37 H 0.96996 * 120.00388 * 91.15027 * 17 15 14 38 38 H 1.09000 * 109.46879 * 299.99740 * 20 18 17 39 39 H 1.08995 * 109.47002 * 60.00111 * 20 18 17 40 40 H 1.08997 * 109.46927 * 300.00481 * 22 21 20 41 41 H 1.09001 * 109.46780 * 59.99824 * 22 21 20 42 42 H 1.08999 * 110.91058 * 338.64390 * 25 23 22 43 43 H 1.09001 * 110.90946 * 102.24484 * 25 23 22 44 44 H 1.09002 * 110.61997 * 278.51844 * 26 25 23 45 45 H 1.09006 * 110.74947 * 155.59139 * 26 25 23 46 46 H 1.09009 * 109.88088 * 267.09400 * 28 27 26 47 47 H 1.08995 * 109.88428 * 145.94113 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0916 -0.8114 -1.2004 5 7 3.4326 -1.2461 -0.7690 6 6 4.4723 -1.5694 -1.5994 7 1 4.3446 -1.5162 -2.6705 8 6 5.6906 -1.9654 -1.0645 9 7 5.8464 -2.0298 0.2408 10 14 7.1091 -2.4056 -2.1974 11 1 7.4519 -1.2322 -3.0403 12 1 8.2897 -2.7936 -1.3844 13 1 6.7132 -3.5418 -3.0679 14 6 3.4690 -1.2743 0.7005 15 6 2.0861 -0.8080 1.2022 16 1 1.4467 -1.6633 1.4209 17 7 2.2246 0.0485 2.3827 18 6 2.2451 -0.4993 3.6139 19 8 2.1484 -1.7012 3.7447 20 6 2.3871 0.3817 4.8283 21 8 2.3817 -0.4268 6.0065 22 6 2.5123 0.3149 7.2210 23 6 2.4950 -0.6470 8.4106 24 1 1.5899 -1.2543 8.3958 25 6 2.6044 0.1354 9.7418 26 6 3.5629 -0.7605 10.5672 27 8 4.5011 -1.2460 9.5830 28 6 3.7472 -1.5451 8.3963 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5733 -0.8529 31 1 -0.3634 -1.0252 -0.0701 32 1 2.1643 -0.1784 -2.0848 33 1 1.4599 -1.6760 -1.4044 34 1 6.6975 -2.3069 0.6145 35 1 4.2428 -0.5988 1.0652 36 1 3.6663 -2.2888 1.0471 37 1 2.3017 1.0097 2.2781 38 1 3.3257 0.9328 4.7696 39 1 1.5548 1.0845 4.8666 40 1 3.4538 0.8640 7.2120 41 1 1.6831 1.0170 7.3089 42 1 3.0380 1.1220 9.5787 43 1 1.6317 0.2150 10.2274 44 1 3.0188 -1.5891 11.0206 45 1 4.0759 -0.1761 11.3311 46 1 3.4511 -2.5941 8.3998 47 1 4.3472 -1.3303 7.5120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209068277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:42 Heat of formation + Delta-G solvation = -129.532440 kcal Electronic energy + Delta-G solvation = -26292.916940 eV Core-core repulsion = 22475.412971 eV Total energy + Delta-G solvation = -3817.503969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05740 -40.49353 -39.29056 -38.22351 -35.62775 -34.29691 -33.88292 -32.18086 -30.77619 -30.05286 -28.40463 -27.29184 -26.33049 -25.17057 -23.40445 -22.47466 -21.61172 -21.55243 -20.99649 -18.90231 -18.29082 -17.92827 -17.75089 -17.13703 -16.98086 -16.77312 -16.69836 -16.00968 -15.69171 -15.58632 -15.33102 -14.79676 -14.53993 -14.22826 -14.06402 -13.93570 -13.70829 -13.36554 -13.33456 -13.04464 -12.88334 -12.85067 -12.63520 -12.57810 -12.25955 -12.16359 -12.08296 -11.99912 -11.85907 -11.65699 -11.60719 -11.46088 -10.82714 -10.74409 -10.73694 -10.60919 -10.00881 -8.94076 -7.85533 -5.23818 1.43211 1.47646 1.54088 1.61462 1.84290 2.48117 2.90629 3.01835 3.32514 3.55120 3.55748 3.71802 3.82889 3.86239 3.94520 4.04417 4.11438 4.20113 4.23292 4.31103 4.34518 4.38946 4.49767 4.53560 4.61685 4.67946 4.73399 4.81075 4.86001 4.88581 4.88658 5.02150 5.06940 5.08266 5.18033 5.22274 5.29371 5.43625 5.50448 5.61218 5.77640 5.88848 6.09404 6.15463 6.63010 7.05201 7.31872 7.74814 8.38540 9.23253 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.002859 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.596247 B = 9792.739396 C =11425.218629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.096 0.904 4 C 0.131 3.869 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.089 0.911 8 C -0.071 4.071 9 N -0.953 5.953 10 Si 0.982 3.018 11 H -0.270 1.270 12 H -0.298 1.298 13 H -0.277 1.277 14 C 0.188 3.812 15 C 0.137 3.863 16 H 0.069 0.931 17 N -0.698 5.698 18 C 0.503 3.497 19 O -0.579 6.579 20 C 0.054 3.946 21 O -0.398 6.398 22 C 0.066 3.934 23 C -0.120 4.120 24 H 0.092 0.908 25 C -0.135 4.135 26 C 0.036 3.964 27 O -0.407 6.407 28 C 0.049 3.951 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.244 0.756 35 H 0.019 0.981 36 H -0.015 1.015 37 H 0.417 0.583 38 H 0.100 0.900 39 H 0.123 0.877 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.110 0.890 46 H 0.051 0.949 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 13.157 16.395 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.111 4.111 3 H 0.115 0.885 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.107 0.893 8 C -0.264 4.264 9 N -0.602 5.602 10 Si 0.810 3.190 11 H -0.196 1.196 12 H -0.225 1.225 13 H -0.203 1.203 14 C 0.061 3.939 15 C 0.031 3.969 16 H 0.088 0.912 17 N -0.351 5.351 18 C 0.290 3.710 19 O -0.458 6.458 20 C -0.025 4.025 21 O -0.318 6.318 22 C -0.009 4.009 23 C -0.139 4.139 24 H 0.110 0.890 25 C -0.173 4.173 26 C -0.040 4.040 27 O -0.327 6.327 28 C -0.028 4.028 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.037 0.963 36 H 0.003 0.997 37 H 0.254 0.746 38 H 0.118 0.882 39 H 0.141 0.859 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.086 0.914 45 H 0.128 0.872 46 H 0.070 0.930 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.438 12.014 16.524 23.918 hybrid contribution 1.231 -0.417 -0.691 1.473 sum -11.207 11.597 15.832 22.600 Atomic orbital electron populations 1.21652 0.91613 1.02176 1.03192 1.22619 0.97284 0.98945 0.92251 0.88543 1.21962 0.85149 0.95782 0.96550 1.44733 1.09511 1.79298 1.01990 1.19484 0.90024 1.37792 0.89878 0.89317 1.25763 1.00824 1.02390 0.97435 1.70238 1.24276 1.54611 1.11067 0.85104 0.78099 0.78418 0.77421 1.19571 1.22459 1.20350 1.21114 0.92861 0.96381 0.83538 1.22032 0.96279 0.93659 0.84965 0.91244 1.45608 1.73971 1.11189 1.04363 1.21120 0.75478 0.88871 0.85516 1.90716 1.50304 1.17839 1.86946 1.22269 1.05211 0.92204 0.82805 1.87982 1.95054 1.34780 1.13944 1.22770 1.01972 0.93872 0.82323 1.22557 0.98859 0.97427 0.95010 0.88973 1.23134 1.01918 0.99449 0.92777 1.23826 0.90973 0.97252 0.91979 1.88863 1.33544 1.86139 1.24182 1.23183 0.92913 0.98633 0.88047 0.91053 0.90238 0.93316 0.92502 0.95881 0.94719 0.96281 0.99670 0.74555 0.88194 0.85924 0.92102 0.89762 0.89095 0.87323 0.91436 0.87163 0.93020 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.32 71.98 0.67 -2.22 16 2 C -0.09 -2.80 3.28 -9.23 -0.03 -2.83 16 3 H 0.10 2.65 8.01 -2.39 -0.02 2.63 16 4 C 0.13 5.19 6.72 87.02 0.59 5.77 16 5 N -0.63 -33.24 3.40 -691.01 -2.35 -35.59 16 6 C -0.24 -13.95 10.28 84.04 0.86 -13.09 16 7 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 8 C -0.07 -4.23 5.49 84.86 0.47 -3.77 16 9 N -0.95 -60.79 10.31 21.65 0.22 -60.56 16 10 Si 0.98 47.27 29.55 68.60 2.03 49.29 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 C 0.19 9.91 5.12 86.73 0.44 10.35 16 15 C 0.14 5.29 2.73 46.18 0.13 5.41 16 16 H 0.07 2.96 7.52 -2.39 -0.02 2.95 16 17 N -0.70 -21.38 5.12 -436.90 -2.24 -23.61 16 18 C 0.50 17.04 7.91 87.66 0.69 17.74 16 19 O -0.58 -26.87 16.18 16.01 0.26 -26.61 16 20 C 0.05 1.21 6.42 71.24 0.46 1.66 16 21 O -0.40 -10.67 9.62 -129.94 -1.25 -11.92 16 22 C 0.07 1.15 5.03 71.98 0.36 1.51 16 23 C -0.12 -2.10 3.34 -9.81 -0.03 -2.14 16 24 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 25 C -0.14 -1.50 6.71 31.90 0.21 -1.29 16 26 C 0.04 0.52 7.72 72.67 0.56 1.08 16 27 O -0.41 -9.89 11.52 -148.98 -1.72 -11.60 16 28 C 0.05 1.19 7.23 72.36 0.52 1.71 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.18 8.09 -2.39 -0.02 1.16 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.02 0.92 8.00 -2.39 -0.02 0.91 16 34 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.02 1.10 7.27 -2.39 -0.02 1.09 16 36 H -0.01 -0.96 7.51 -2.38 -0.02 -0.98 16 37 H 0.42 9.07 8.54 -92.71 -0.79 8.28 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 0.84 7.87 -2.39 -0.02 0.82 16 43 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.07 1.97 7.60 -2.39 -0.02 1.95 16 Total: -1.00 -85.61 378.56 1.02 -84.59 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.15 Total: 16.10 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 5.90 Total: 19.90 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -4.36 Total: -119.76 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -2.71 Total: -50.13 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -85.61 1.02 -84.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209068277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.946 kcal (2) G-P(sol) polarization free energy of solvation -85.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds