Wall clock time and date at job start Fri Apr 10 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00042 * 2 1 4 4 C 1.52997 * 109.47128 * 124.99419 * 3 2 1 5 5 O 1.42900 * 109.47247 * 180.02562 * 4 3 2 6 6 C 1.42894 * 114.00314 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.47052 * 30.00368 * 6 5 4 8 8 C 1.53002 * 109.47291 * 270.00227 * 6 5 4 9 9 C 1.50700 * 109.47254 * 149.99931 * 6 5 4 10 10 O 1.21279 * 120.00113 * 5.00330 * 9 6 5 11 11 N 1.34784 * 119.99961 * 185.00098 * 9 6 5 12 12 C 1.46494 * 119.99635 * 180.02562 * 11 9 6 13 13 H 1.08994 * 110.64448 * 36.68786 * 12 11 9 14 14 C 1.54329 * 110.71914 * 273.54393 * 12 11 9 15 15 N 1.47030 * 107.26954 * 219.44355 * 14 12 11 16 16 C 1.36938 * 125.64515 * 178.90530 * 15 14 12 17 17 H 1.08003 * 119.99982 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99997 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99995 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00069 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47174 * 60.00437 * 20 18 16 22 22 H 1.48502 * 109.46943 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47280 * 299.99953 * 20 18 16 24 24 C 1.47414 * 108.70311 * 358.94679 * 15 14 12 25 25 C 1.54908 * 104.83563 * 24.12574 * 24 15 14 26 26 H 1.08999 * 111.00626 * 81.06696 * 25 24 15 27 27 O 1.42904 * 111.00125 * 204.91810 * 25 24 15 28 28 C 1.42904 * 113.99848 * 262.19000 * 27 25 24 29 29 H 1.08008 * 119.99933 * 179.97438 * 1 2 3 30 30 H 1.07996 * 119.99993 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.99993 * 179.97438 * 2 1 3 32 32 H 1.09008 * 109.46900 * 5.00098 * 3 2 1 33 33 H 1.08989 * 109.47195 * 245.00048 * 3 2 1 34 34 H 1.08998 * 109.46869 * 60.00532 * 4 3 2 35 35 H 1.09003 * 109.47510 * 300.00187 * 4 3 2 36 36 H 1.09005 * 109.46977 * 179.97438 * 8 6 5 37 37 H 1.08994 * 109.47012 * 299.99576 * 8 6 5 38 38 H 1.08996 * 109.46837 * 59.99739 * 8 6 5 39 39 H 0.96995 * 120.00015 * 359.72695 * 11 9 6 40 40 H 1.08995 * 109.88248 * 338.86477 * 14 12 11 41 41 H 1.09004 * 109.88263 * 99.87766 * 14 12 11 42 42 H 0.96999 * 120.00168 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.36969 * 142.96834 * 24 15 14 44 44 H 1.09005 * 110.36614 * 265.28271 * 24 15 14 45 45 H 1.08999 * 109.46582 * 60.00749 * 28 27 25 46 46 H 1.09002 * 109.46915 * 180.02562 * 28 27 25 47 47 H 1.08996 * 109.47094 * 300.00454 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 8 3.7490 2.5709 1.1821 6 6 4.6884 2.6998 2.2511 7 1 5.0654 1.7142 2.5242 8 6 4.0004 3.3358 3.4607 9 6 5.8355 3.5717 1.8096 10 8 5.8045 4.1106 0.7236 11 7 6.8958 3.7527 2.6218 12 6 8.0106 4.6008 2.1928 13 1 7.6462 5.4545 1.6215 14 6 9.0299 3.7869 1.3680 15 7 10.3718 4.2407 1.7619 16 6 11.5546 3.7510 1.2756 17 1 11.5499 2.9630 0.5371 18 6 12.7595 4.2673 1.7319 19 7 12.7653 5.2273 2.6324 20 14 14.3729 3.5988 1.0692 21 1 14.4279 3.8052 -0.4004 22 1 15.5057 4.3128 1.7114 23 1 14.4680 2.1476 1.3692 24 6 10.2331 5.3095 2.7676 25 6 8.8460 5.0685 3.4138 26 1 8.8989 4.2883 4.1730 27 8 8.3190 6.2786 3.9616 28 6 8.5316 6.4210 5.3676 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 3.7399 0.5067 1.0921 35 1 2.4771 1.2357 2.1131 36 1 4.7169 3.4336 4.2764 37 1 3.6234 4.3213 3.1876 38 1 3.1707 2.7051 3.7800 39 1 6.9188 3.3249 3.4920 40 1 8.9191 2.7247 1.5857 41 1 8.8731 3.9655 0.3042 42 1 13.6073 5.5884 2.9510 43 1 11.0200 5.2293 3.5176 44 1 10.2634 6.2880 2.2881 45 1 9.6014 6.4129 5.5758 46 1 8.1023 7.3640 5.7062 47 1 8.0528 5.5948 5.8929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211992487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:50 Heat of formation + Delta-G solvation = -76.933413 kcal Electronic energy + Delta-G solvation = -26415.312006 eV Core-core repulsion = 22600.088902 eV Total energy + Delta-G solvation = -3815.223104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00707 -38.55438 -37.62065 -35.91203 -35.32563 -34.09282 -32.24551 -31.28441 -29.27288 -28.74121 -27.12972 -26.09714 -24.88694 -23.91414 -23.04446 -20.82193 -20.57522 -20.10026 -19.73347 -17.60038 -17.13989 -16.77076 -16.44295 -15.98239 -15.46327 -15.36171 -14.96004 -14.61558 -14.45647 -14.27699 -14.09393 -13.64741 -13.42036 -13.25358 -12.85279 -12.81564 -12.56342 -12.42217 -12.21530 -11.88888 -11.53780 -11.43840 -11.38402 -11.30906 -11.27991 -11.03765 -10.81949 -10.77100 -10.23033 -10.06600 -9.91503 -9.82346 -9.70112 -9.45499 -9.05450 -8.70887 -8.67314 -6.90764 -5.70170 -3.13227 1.88177 2.77719 2.88611 3.39004 3.43315 3.44572 3.77997 4.10672 4.48034 4.59498 4.60815 4.74111 4.77304 4.85665 4.92709 5.05160 5.13924 5.19675 5.34883 5.40981 5.47157 5.47524 5.49876 5.59202 5.65556 5.67613 5.67986 5.75990 5.82589 5.88653 5.92958 6.07414 6.21052 6.26667 6.39309 6.47483 6.69530 6.83171 6.96158 7.24941 7.54394 7.67039 7.72282 7.78823 8.25967 8.41631 9.15446 9.75710 10.38306 11.33615 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016879 B = 0.002825 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.482808 B = 9909.544663 C =11251.475417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.073 3.927 7 H 0.085 0.915 8 C -0.169 4.169 9 C 0.513 3.487 10 O -0.517 6.517 11 N -0.714 5.714 12 C 0.137 3.863 13 H 0.101 0.899 14 C 0.130 3.870 15 N -0.601 5.601 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.011 4.011 19 N -0.924 5.924 20 Si 0.918 3.082 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.142 3.858 25 C 0.055 3.945 26 H 0.067 0.933 27 O -0.380 6.380 28 C 0.035 3.965 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.254 0.746 43 H 0.113 0.887 44 H 0.027 0.973 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.173 -7.679 5.410 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.011 3.989 7 H 0.103 0.897 8 C -0.227 4.227 9 C 0.297 3.703 10 O -0.391 6.391 11 N -0.367 5.367 12 C 0.033 3.967 13 H 0.119 0.881 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.350 4.350 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.748 3.252 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.016 3.984 25 C -0.004 4.004 26 H 0.085 0.915 27 O -0.298 6.298 28 C -0.062 4.062 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.230 0.770 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.130 0.870 44 H 0.045 0.955 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.102 -6.956 4.367 21.715 hybrid contribution 0.978 -0.964 0.486 1.457 sum -19.124 -7.919 4.853 21.261 Atomic orbital electron populations 1.23898 0.95878 1.02013 1.00899 1.22827 0.96013 0.98072 1.00096 1.20645 0.97905 0.95782 0.98769 1.22530 0.94132 0.86286 0.98331 1.88039 1.53697 1.37034 1.48693 1.21888 0.89504 0.99108 0.88405 0.89721 1.22220 1.01443 1.02563 0.96451 1.20286 0.82799 0.82068 0.85118 1.90731 1.79328 1.47818 1.21219 1.45939 1.19288 1.51284 1.20171 1.22171 0.85302 0.93141 0.96113 0.88079 1.21606 0.85366 0.95925 0.96769 1.44303 0.99773 1.41779 1.46990 1.19049 0.82156 1.15245 1.18596 0.90256 1.24805 0.97803 0.98536 0.99465 1.69738 1.24941 1.29285 1.33245 0.86102 0.82730 0.78045 0.78324 1.21090 1.21536 1.21132 1.22297 0.91577 0.91024 0.93499 1.24039 0.96363 0.85976 0.94055 0.91468 1.87862 1.79392 1.40582 1.21966 1.22708 1.00674 1.00799 0.82009 0.88348 0.88419 0.87155 0.90530 0.89762 0.93016 0.93125 0.90890 0.90961 0.91424 0.77018 0.95306 0.94791 0.93543 0.86954 0.95512 0.93525 0.90300 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 14.32 29.01 0.42 -0.83 16 2 C -0.15 -1.11 9.52 -36.03 -0.34 -1.45 16 3 C -0.09 -0.83 6.03 -27.88 -0.17 -1.00 16 4 C 0.06 0.60 5.73 37.16 0.21 0.82 16 5 O -0.36 -4.71 9.53 -55.09 -0.52 -5.24 16 6 C 0.07 0.84 3.13 -27.88 -0.09 0.76 16 7 H 0.09 0.77 7.79 -51.93 -0.40 0.37 16 8 C -0.17 -1.53 9.48 37.16 0.35 -1.18 16 9 C 0.51 8.15 7.18 -10.98 -0.08 8.07 16 10 O -0.52 -10.70 16.23 -14.30 -0.23 -10.93 16 11 N -0.71 -10.68 5.09 -52.03 -0.27 -10.94 16 12 C 0.14 2.61 2.97 -66.10 -0.20 2.41 16 13 H 0.10 2.14 7.69 -51.93 -0.40 1.74 16 14 C 0.13 2.87 6.99 -3.06 -0.02 2.85 16 15 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 16 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 17 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 20 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.14 3.44 5.62 -2.54 -0.01 3.43 16 25 C 0.06 1.05 3.15 -24.58 -0.08 0.97 16 26 H 0.07 1.16 7.69 -51.93 -0.40 0.77 16 27 O -0.38 -6.85 10.51 -35.23 -0.37 -7.22 16 28 C 0.03 0.48 10.85 101.05 1.10 1.58 16 29 H 0.10 0.52 8.06 -52.48 -0.42 0.10 16 30 H 0.10 0.61 7.84 -52.49 -0.41 0.20 16 31 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.08 0.68 7.79 -51.92 -0.40 0.28 16 33 H 0.08 0.82 8.14 -51.94 -0.42 0.39 16 34 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.05 0.40 7.87 -51.93 -0.41 -0.01 16 36 H 0.07 0.55 7.92 -51.93 -0.41 0.14 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 39 H 0.40 4.61 8.29 -40.82 -0.34 4.27 16 40 H 0.03 0.61 8.03 -51.93 -0.42 0.20 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.11 2.99 5.87 -51.93 -0.30 2.69 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -33.60 388.41 -7.82 -41.42 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.08 Total: 2.51 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 0.84 Total: 9.68 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.28 Total: -52.99 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.13 Total: -23.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.60 -7.82 -41.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211992487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.512 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds