Wall clock time and date at job start Fri Apr 10 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00042 * 2 1 4 4 C 1.52997 * 109.47128 * 124.99419 * 3 2 1 5 5 O 1.42900 * 109.47247 * 180.02562 * 4 3 2 6 6 C 1.42894 * 114.00314 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.47052 * 30.00368 * 6 5 4 8 8 C 1.53002 * 109.47291 * 270.00227 * 6 5 4 9 9 C 1.50700 * 109.47254 * 149.99931 * 6 5 4 10 10 O 1.21279 * 120.00113 * 5.00330 * 9 6 5 11 11 N 1.34784 * 119.99961 * 185.00098 * 9 6 5 12 12 C 1.46494 * 119.99635 * 180.02562 * 11 9 6 13 13 H 1.08994 * 110.64448 * 36.68786 * 12 11 9 14 14 C 1.54329 * 110.71914 * 273.54393 * 12 11 9 15 15 N 1.47030 * 107.26954 * 219.44355 * 14 12 11 16 16 C 1.36938 * 125.64515 * 178.90530 * 15 14 12 17 17 H 1.08003 * 119.99982 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99997 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99995 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00069 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47174 * 60.00437 * 20 18 16 22 22 H 1.48502 * 109.46943 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47280 * 299.99953 * 20 18 16 24 24 C 1.47414 * 108.70311 * 358.94679 * 15 14 12 25 25 C 1.54908 * 104.83563 * 24.12574 * 24 15 14 26 26 H 1.08999 * 111.00626 * 81.06696 * 25 24 15 27 27 O 1.42904 * 111.00125 * 204.91810 * 25 24 15 28 28 C 1.42904 * 113.99848 * 262.19000 * 27 25 24 29 29 H 1.08008 * 119.99933 * 179.97438 * 1 2 3 30 30 H 1.07996 * 119.99993 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.99993 * 179.97438 * 2 1 3 32 32 H 1.09008 * 109.46900 * 5.00098 * 3 2 1 33 33 H 1.08989 * 109.47195 * 245.00048 * 3 2 1 34 34 H 1.08998 * 109.46869 * 60.00532 * 4 3 2 35 35 H 1.09003 * 109.47510 * 300.00187 * 4 3 2 36 36 H 1.09005 * 109.46977 * 179.97438 * 8 6 5 37 37 H 1.08994 * 109.47012 * 299.99576 * 8 6 5 38 38 H 1.08996 * 109.46837 * 59.99739 * 8 6 5 39 39 H 0.96995 * 120.00015 * 359.72695 * 11 9 6 40 40 H 1.08995 * 109.88248 * 338.86477 * 14 12 11 41 41 H 1.09004 * 109.88263 * 99.87766 * 14 12 11 42 42 H 0.96999 * 120.00168 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.36969 * 142.96834 * 24 15 14 44 44 H 1.09005 * 110.36614 * 265.28271 * 24 15 14 45 45 H 1.08999 * 109.46582 * 60.00749 * 28 27 25 46 46 H 1.09002 * 109.46915 * 180.02562 * 28 27 25 47 47 H 1.08996 * 109.47094 * 300.00454 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 8 3.7490 2.5709 1.1821 6 6 4.6884 2.6998 2.2511 7 1 5.0654 1.7142 2.5242 8 6 4.0004 3.3358 3.4607 9 6 5.8355 3.5717 1.8096 10 8 5.8045 4.1106 0.7236 11 7 6.8958 3.7527 2.6218 12 6 8.0106 4.6008 2.1928 13 1 7.6462 5.4545 1.6215 14 6 9.0299 3.7869 1.3680 15 7 10.3718 4.2407 1.7619 16 6 11.5546 3.7510 1.2756 17 1 11.5499 2.9630 0.5371 18 6 12.7595 4.2673 1.7319 19 7 12.7653 5.2273 2.6324 20 14 14.3729 3.5988 1.0692 21 1 14.4279 3.8052 -0.4004 22 1 15.5057 4.3128 1.7114 23 1 14.4680 2.1476 1.3692 24 6 10.2331 5.3095 2.7676 25 6 8.8460 5.0685 3.4138 26 1 8.8989 4.2883 4.1730 27 8 8.3190 6.2786 3.9616 28 6 8.5316 6.4210 5.3676 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 3.7399 0.5067 1.0921 35 1 2.4771 1.2357 2.1131 36 1 4.7169 3.4336 4.2764 37 1 3.6234 4.3213 3.1876 38 1 3.1707 2.7051 3.7800 39 1 6.9188 3.3249 3.4920 40 1 8.9191 2.7247 1.5857 41 1 8.8731 3.9655 0.3042 42 1 13.6073 5.5884 2.9510 43 1 11.0200 5.2293 3.5176 44 1 10.2634 6.2880 2.2881 45 1 9.6014 6.4129 5.5758 46 1 8.1023 7.3640 5.7062 47 1 8.0528 5.5948 5.8929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211992487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:50 Heat of formation + Delta-G solvation = -100.214041 kcal Electronic energy + Delta-G solvation = -26416.321530 eV Core-core repulsion = 22600.088902 eV Total energy + Delta-G solvation = -3816.232628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29947 -39.90245 -38.75221 -37.51138 -35.98515 -35.67811 -33.87110 -32.47224 -30.53814 -29.88618 -28.80838 -27.50073 -26.34244 -25.18325 -23.83543 -22.46967 -22.04141 -21.32262 -20.63843 -19.21834 -18.32049 -18.16840 -17.73127 -17.17329 -16.79207 -16.43622 -16.25024 -15.85323 -15.73176 -15.66810 -15.42011 -15.01471 -14.67641 -14.39730 -14.14307 -13.97994 -13.70971 -13.58369 -13.25453 -13.19032 -13.16584 -13.01955 -12.70510 -12.56385 -12.33782 -12.18867 -12.10940 -12.08594 -11.96846 -11.90298 -11.58746 -11.04966 -10.80260 -10.64043 -10.45630 -10.25478 -10.13463 -8.98636 -7.81511 -5.29088 1.34268 1.46672 1.50440 1.54300 1.56751 1.77533 2.44433 2.73366 2.87328 3.29068 3.53219 3.61024 3.82436 3.91970 3.95131 3.97145 4.05298 4.11683 4.16438 4.27227 4.34530 4.46302 4.48150 4.48348 4.62134 4.67755 4.70408 4.80387 4.82877 4.90214 4.90402 4.91323 5.05282 5.11994 5.21884 5.28207 5.40920 5.43373 5.67651 5.74043 5.86227 6.10645 6.18573 6.31623 6.52905 7.03708 7.20382 7.68088 8.30604 9.19718 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016879 B = 0.002825 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.482808 B = 9909.544663 C =11251.475417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C -0.094 4.094 4 C 0.061 3.939 5 O -0.391 6.391 6 C 0.078 3.922 7 H 0.119 0.881 8 C -0.163 4.163 9 C 0.508 3.492 10 O -0.573 6.573 11 N -0.697 5.697 12 C 0.153 3.847 13 H 0.074 0.926 14 C 0.132 3.868 15 N -0.619 5.619 16 C -0.245 4.245 17 H 0.082 0.918 18 C -0.062 4.062 19 N -0.947 5.947 20 Si 0.985 3.015 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.272 1.272 24 C 0.146 3.854 25 C 0.080 3.920 26 H 0.095 0.905 27 O -0.396 6.396 28 C 0.026 3.974 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.417 0.583 40 H 0.043 0.957 41 H 0.011 0.989 42 H 0.251 0.749 43 H 0.090 0.910 44 H -0.013 1.013 45 H 0.035 0.965 46 H 0.102 0.898 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.613 -9.772 7.333 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C -0.131 4.131 4 C -0.015 4.015 5 O -0.310 6.310 6 C 0.017 3.983 7 H 0.136 0.864 8 C -0.221 4.221 9 C 0.295 3.705 10 O -0.451 6.451 11 N -0.351 5.351 12 C 0.047 3.953 13 H 0.092 0.908 14 C 0.005 3.995 15 N -0.347 5.347 16 C -0.373 4.373 17 H 0.099 0.901 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.812 3.188 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.198 1.198 24 C 0.020 3.980 25 C 0.020 3.980 26 H 0.113 0.887 27 O -0.314 6.314 28 C -0.070 4.070 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.005 0.995 45 H 0.054 0.946 46 H 0.120 0.880 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.579 -9.079 6.336 24.253 hybrid contribution 1.375 -0.269 -0.138 1.408 sum -20.204 -9.348 6.198 23.109 Atomic orbital electron populations 1.24079 0.95736 1.02810 0.99539 1.22810 0.96256 0.97577 1.01287 1.20633 0.97780 0.96665 0.98047 1.22726 0.94285 0.85122 0.99403 1.88009 1.54238 1.38996 1.49743 1.21982 0.87992 0.99701 0.88635 0.86392 1.22226 1.02535 1.01773 0.95529 1.21246 0.83523 0.81549 0.84136 1.90710 1.80463 1.50180 1.23776 1.45675 1.17889 1.50471 1.21066 1.21632 0.85721 0.92469 0.95465 0.90753 1.21663 0.84735 0.97031 0.96084 1.44556 1.00640 1.41948 1.47508 1.19405 0.83365 1.15586 1.18959 0.90059 1.25664 1.00997 0.98933 0.99876 1.69978 1.25334 1.30190 1.34095 0.85065 0.78343 0.77882 0.77485 1.20869 1.21642 1.19750 1.22075 0.94486 0.88931 0.92552 1.23598 0.92887 0.87184 0.94303 0.88692 1.87856 1.78864 1.40045 1.24676 1.23006 1.00662 1.03444 0.79862 0.86839 0.88377 0.86111 0.91092 0.91474 0.92086 0.90927 0.88846 0.92867 0.88886 0.74489 0.93889 0.97071 0.93976 0.89266 0.99525 0.94615 0.87958 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 14.32 67.78 0.97 -1.10 16 2 C -0.16 -2.09 9.52 25.65 0.24 -1.84 16 3 C -0.09 -1.59 6.03 29.85 0.18 -1.41 16 4 C 0.06 1.02 5.73 71.98 0.41 1.43 16 5 O -0.39 -9.86 9.53 -129.99 -1.24 -11.10 16 6 C 0.08 1.62 3.13 29.85 0.09 1.72 16 7 H 0.12 1.68 7.79 -2.38 -0.02 1.66 16 8 C -0.16 -2.40 9.48 71.98 0.68 -1.72 16 9 C 0.51 15.70 7.18 87.66 0.63 16.33 16 10 O -0.57 -24.33 16.23 15.96 0.26 -24.07 16 11 N -0.70 -19.71 5.09 -436.91 -2.23 -21.93 16 12 C 0.15 5.85 2.97 46.18 0.14 5.99 16 13 H 0.07 3.27 7.69 -2.39 -0.02 3.26 16 14 C 0.13 5.91 6.99 86.73 0.61 6.51 16 15 N -0.62 -32.79 3.39 -691.98 -2.35 -35.14 16 16 C -0.24 -13.89 10.27 84.03 0.86 -13.03 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 19 N -0.95 -55.78 10.09 21.65 0.22 -55.56 16 20 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 C 0.15 7.31 5.62 86.86 0.49 7.79 16 25 C 0.08 2.99 3.15 31.99 0.10 3.09 16 26 H 0.10 3.05 7.69 -2.39 -0.02 3.03 16 27 O -0.40 -13.90 10.51 -148.98 -1.57 -15.47 16 28 C 0.03 0.66 10.85 113.37 1.23 1.89 16 29 H 0.11 0.93 8.06 -2.91 -0.02 0.90 16 30 H 0.10 1.07 7.84 -2.91 -0.02 1.05 16 31 H 0.12 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.07 1.24 7.79 -2.38 -0.02 1.22 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.07 0.90 7.87 -2.39 -0.02 0.88 16 36 H 0.09 0.99 7.92 -2.38 -0.02 0.97 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 0.94 7.87 -2.39 -0.02 0.92 16 39 H 0.42 8.26 8.29 -92.71 -0.77 7.49 16 40 H 0.04 1.81 8.03 -2.39 -0.02 1.79 16 41 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.09 4.91 5.87 -2.39 -0.01 4.89 16 44 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 45 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 Total: -1.00 -77.06 388.41 2.40 -74.66 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.17 Total: 18.55 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 7.10 Total: 22.62 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.36 Total: -112.64 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -2.55 Total: -50.64 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -77.06 2.40 -74.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211992487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.549 kcal (2) G-P(sol) polarization free energy of solvation -77.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds