Wall clock time and date at job start Fri Apr 10 2020 18:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00021 * 2 1 4 4 C 1.52997 * 109.46849 * 124.99541 * 3 2 1 5 5 O 1.42902 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.42900 * 114.00084 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.46831 * 329.99677 * 6 5 4 8 8 C 1.53001 * 109.47296 * 89.99955 * 6 5 4 9 9 C 1.50703 * 109.46853 * 209.99816 * 6 5 4 10 10 O 1.21285 * 120.00008 * 355.00117 * 9 6 5 11 11 N 1.34776 * 119.99890 * 174.99477 * 9 6 5 12 12 C 1.46495 * 119.99803 * 180.02562 * 11 9 6 13 13 H 1.09000 * 110.78470 * 36.79251 * 12 11 9 14 14 C 1.54325 * 110.72250 * 273.54657 * 12 11 9 15 15 N 1.47018 * 107.40412 * 219.52320 * 14 12 11 16 16 C 1.36936 * 125.64999 * 178.82784 * 15 14 12 17 17 H 1.08004 * 119.99836 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00358 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99732 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00198 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46968 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47014 * 119.99939 * 20 18 16 23 23 H 1.48497 * 109.46957 * 239.99998 * 20 18 16 24 24 C 1.47426 * 108.70517 * 358.86539 * 15 14 12 25 25 C 1.54914 * 104.82992 * 24.12623 * 24 15 14 26 26 H 1.09004 * 111.00278 * 81.10732 * 25 24 15 27 27 O 1.42900 * 111.00244 * 204.91582 * 25 24 15 28 28 C 1.42896 * 114.00253 * 268.55050 * 27 25 24 29 29 H 1.08004 * 120.00057 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.00196 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99766 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46611 * 5.00336 * 3 2 1 33 33 H 1.08994 * 109.47418 * 245.00246 * 3 2 1 34 34 H 1.09006 * 109.47216 * 60.00692 * 4 3 2 35 35 H 1.08994 * 109.47686 * 300.00540 * 4 3 2 36 36 H 1.09002 * 109.47183 * 299.99726 * 8 6 5 37 37 H 1.09000 * 109.47007 * 60.00362 * 8 6 5 38 38 H 1.09007 * 109.46814 * 179.97438 * 8 6 5 39 39 H 0.96997 * 119.99763 * 0.02562 * 11 9 6 40 40 H 1.09002 * 109.88192 * 100.02760 * 14 12 11 41 41 H 1.09000 * 109.88128 * 339.01612 * 14 12 11 42 42 H 0.96996 * 119.99954 * 180.02562 * 19 18 16 43 43 H 1.08999 * 110.36956 * 142.96999 * 24 15 14 44 44 H 1.09003 * 110.36599 * 265.28903 * 24 15 14 45 45 H 1.08996 * 109.47676 * 60.00058 * 28 27 25 46 46 H 1.09010 * 109.47308 * 180.02562 * 28 27 25 47 47 H 1.09002 * 109.46799 * 299.99570 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7491 2.5709 1.1821 6 6 4.6885 2.6996 2.2512 7 1 4.3364 2.1344 3.1142 8 6 6.0470 2.1555 1.8048 9 6 4.8277 4.1528 2.6252 10 8 4.2562 5.0034 1.9765 11 7 5.5871 4.5072 3.6807 12 6 5.7220 5.9199 4.0446 13 1 4.7838 6.4515 3.8856 14 6 6.8665 6.5819 3.2487 15 7 7.5719 7.4894 4.1653 16 6 8.6661 8.2501 3.8502 17 1 9.0816 8.2118 2.8540 18 6 9.2420 9.0695 4.8114 19 7 8.7366 9.1150 6.0258 20 14 10.7351 10.1066 4.3817 21 1 11.1058 9.8763 2.9623 22 1 10.4147 11.5426 4.5823 23 1 11.8713 9.7256 5.2586 24 6 6.9068 7.4443 5.4802 25 6 6.1948 6.0689 5.5174 26 1 6.8924 5.2751 5.7847 27 8 5.0821 6.0923 6.4136 28 6 5.4019 5.6935 7.7480 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5065 1.0921 35 1 2.4772 1.2355 2.1130 36 1 5.9463 1.1044 1.5343 37 1 6.3990 2.7207 0.9419 38 1 6.7636 2.2542 2.6203 39 1 6.0444 3.8270 4.1993 40 1 6.4571 7.1460 2.4106 41 1 7.5527 5.8187 2.8817 42 1 9.1387 9.6878 6.6973 43 1 7.6436 7.5120 6.2806 44 1 6.1785 8.2509 5.5648 45 1 6.1578 6.3642 8.1564 46 1 4.5047 5.7378 8.3655 47 1 5.7870 4.6738 7.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211992488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:53 Heat of formation + Delta-G solvation = -77.332250 kcal Electronic energy + Delta-G solvation = -26413.341099 eV Core-core repulsion = 22598.100700 eV Total energy + Delta-G solvation = -3815.240399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.00199 -38.54897 -37.62396 -35.90277 -35.32644 -34.09393 -32.23225 -31.28265 -29.27825 -28.71968 -27.13535 -26.12627 -24.83758 -23.91055 -23.05344 -20.84411 -20.57796 -20.11382 -19.69716 -17.57050 -17.19200 -16.72829 -16.33014 -16.21948 -15.42110 -15.18971 -15.04690 -14.66539 -14.38478 -14.30022 -13.99688 -13.71703 -13.51111 -13.20881 -13.02238 -12.76737 -12.51234 -12.26272 -12.01693 -11.89659 -11.78780 -11.45110 -11.40216 -11.30320 -11.23175 -11.02587 -10.85346 -10.79047 -10.16906 -10.02942 -9.89734 -9.81037 -9.72663 -9.45409 -9.03662 -8.72192 -8.69733 -6.90865 -5.70864 -3.13636 1.87970 2.77334 2.89023 3.37747 3.43732 3.46188 3.78074 4.10300 4.47345 4.57738 4.63762 4.73935 4.77801 4.82512 4.96734 5.03846 5.12591 5.18743 5.37315 5.41688 5.47519 5.49749 5.53527 5.60433 5.63842 5.67401 5.68463 5.76148 5.84249 5.92860 5.95356 6.07045 6.19904 6.26338 6.39466 6.47375 6.69792 6.83493 6.96476 7.24310 7.54731 7.67219 7.72059 7.77927 8.25334 8.41684 9.15078 9.75364 10.37868 11.33136 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.002691 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.626038 B =10403.583942 C =11256.723738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.356 6.356 6 C 0.073 3.927 7 H 0.084 0.916 8 C -0.170 4.170 9 C 0.513 3.487 10 O -0.517 6.517 11 N -0.714 5.714 12 C 0.140 3.860 13 H 0.101 0.899 14 C 0.130 3.870 15 N -0.601 5.601 16 C -0.220 4.220 17 H 0.081 0.919 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.917 3.083 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.140 3.860 25 C 0.055 3.945 26 H 0.066 0.934 27 O -0.382 6.382 28 C 0.035 3.965 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.396 0.604 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.253 0.747 43 H 0.113 0.887 44 H 0.027 0.973 45 H 0.048 0.952 46 H 0.078 0.922 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 -20.069 -3.446 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.012 3.988 7 H 0.102 0.898 8 C -0.228 4.228 9 C 0.297 3.703 10 O -0.391 6.391 11 N -0.366 5.366 12 C 0.035 3.965 13 H 0.119 0.881 14 C 0.003 3.997 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.748 3.252 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.014 3.986 25 C -0.005 4.005 26 H 0.084 0.916 27 O -0.300 6.300 28 C -0.062 4.062 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.230 0.770 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.130 0.870 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.488 -19.086 -4.048 22.151 hybrid contribution 1.233 -0.147 0.408 1.307 sum -9.255 -19.234 -3.640 21.653 Atomic orbital electron populations 1.23923 0.95925 1.02092 1.00555 1.22807 0.96021 0.97965 1.00412 1.20643 0.98024 0.95918 0.98509 1.22525 0.93830 0.86368 0.98530 1.88046 1.54279 1.37178 1.47952 1.21883 0.91308 0.94272 0.91365 0.89829 1.22235 0.95390 1.01788 1.03393 1.20288 0.79148 0.90252 0.80576 1.90732 1.45587 1.51835 1.50960 1.45917 1.50463 1.08991 1.31264 1.22148 1.00489 0.80327 0.93543 0.88088 1.21606 0.91622 0.93061 0.93368 1.44318 1.32177 1.49280 1.07083 1.19148 1.02199 1.16799 0.96679 0.90128 1.24810 0.99848 1.00112 0.95938 1.69757 1.42064 1.42474 1.02924 0.85951 0.81917 0.79869 0.77498 1.20445 1.21669 1.21736 1.22333 0.95725 0.89486 0.91063 1.24077 0.87485 1.01336 0.87570 0.91579 1.87843 1.33877 1.88827 1.19421 1.22698 1.01287 0.98100 0.84106 0.88339 0.88328 0.87227 0.90370 0.89945 0.93095 0.93125 0.91408 0.90836 0.90783 0.76977 0.94781 0.95206 0.93663 0.86956 0.95544 0.93376 0.90335 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 14.32 29.01 0.42 -0.85 16 2 C -0.15 -1.09 9.52 -36.03 -0.34 -1.44 16 3 C -0.09 -0.82 6.03 -27.88 -0.17 -0.99 16 4 C 0.06 0.60 5.73 37.16 0.21 0.81 16 5 O -0.36 -4.70 9.53 -55.09 -0.52 -5.23 16 6 C 0.07 0.85 3.13 -27.88 -0.09 0.77 16 7 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 8 C -0.17 -1.60 9.48 37.16 0.35 -1.25 16 9 C 0.51 8.16 7.18 -10.98 -0.08 8.08 16 10 O -0.52 -10.71 16.24 -14.31 -0.23 -10.94 16 11 N -0.71 -10.69 5.09 -51.90 -0.26 -10.96 16 12 C 0.14 2.65 2.98 -65.96 -0.20 2.45 16 13 H 0.10 2.14 7.70 -51.93 -0.40 1.74 16 14 C 0.13 2.87 6.98 -3.07 -0.02 2.84 16 15 N -0.60 -15.46 3.39 -170.07 -0.58 -16.04 16 16 C -0.22 -6.12 10.27 -15.06 -0.15 -6.27 16 17 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 20 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.14 3.38 5.63 -2.53 -0.01 3.37 16 25 C 0.05 1.04 3.11 -24.44 -0.08 0.97 16 26 H 0.07 1.15 7.77 -51.93 -0.40 0.75 16 27 O -0.38 -6.91 10.52 -35.23 -0.37 -7.28 16 28 C 0.03 0.49 10.89 101.05 1.10 1.59 16 29 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 30 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 31 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.08 0.75 7.79 -51.93 -0.40 0.35 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 35 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 39 H 0.40 4.63 8.31 -40.82 -0.34 4.29 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.11 2.98 5.87 -51.93 -0.30 2.68 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 47 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -33.62 388.53 -7.82 -41.44 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.08 Total: 2.52 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 0.85 Total: 9.66 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.28 Total: -52.95 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.13 Total: -23.45 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.62 -7.82 -41.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211992488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.894 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds