Wall clock time and date at job start Fri Apr 10 2020 18:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00021 * 2 1 4 4 C 1.52997 * 109.46849 * 124.99541 * 3 2 1 5 5 O 1.42902 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.42900 * 114.00084 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.46831 * 329.99677 * 6 5 4 8 8 C 1.53001 * 109.47296 * 89.99955 * 6 5 4 9 9 C 1.50703 * 109.46853 * 209.99816 * 6 5 4 10 10 O 1.21285 * 120.00008 * 355.00117 * 9 6 5 11 11 N 1.34776 * 119.99890 * 174.99477 * 9 6 5 12 12 C 1.46495 * 119.99803 * 180.02562 * 11 9 6 13 13 H 1.09000 * 110.78470 * 36.79251 * 12 11 9 14 14 C 1.54325 * 110.72250 * 273.54657 * 12 11 9 15 15 N 1.47018 * 107.40412 * 219.52320 * 14 12 11 16 16 C 1.36936 * 125.64999 * 178.82784 * 15 14 12 17 17 H 1.08004 * 119.99836 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00358 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99732 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00198 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46968 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47014 * 119.99939 * 20 18 16 23 23 H 1.48497 * 109.46957 * 239.99998 * 20 18 16 24 24 C 1.47426 * 108.70517 * 358.86539 * 15 14 12 25 25 C 1.54914 * 104.82992 * 24.12623 * 24 15 14 26 26 H 1.09004 * 111.00278 * 81.10732 * 25 24 15 27 27 O 1.42900 * 111.00244 * 204.91582 * 25 24 15 28 28 C 1.42896 * 114.00253 * 268.55050 * 27 25 24 29 29 H 1.08004 * 120.00057 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.00196 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99766 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46611 * 5.00336 * 3 2 1 33 33 H 1.08994 * 109.47418 * 245.00246 * 3 2 1 34 34 H 1.09006 * 109.47216 * 60.00692 * 4 3 2 35 35 H 1.08994 * 109.47686 * 300.00540 * 4 3 2 36 36 H 1.09002 * 109.47183 * 299.99726 * 8 6 5 37 37 H 1.09000 * 109.47007 * 60.00362 * 8 6 5 38 38 H 1.09007 * 109.46814 * 179.97438 * 8 6 5 39 39 H 0.96997 * 119.99763 * 0.02562 * 11 9 6 40 40 H 1.09002 * 109.88192 * 100.02760 * 14 12 11 41 41 H 1.09000 * 109.88128 * 339.01612 * 14 12 11 42 42 H 0.96996 * 119.99954 * 180.02562 * 19 18 16 43 43 H 1.08999 * 110.36956 * 142.96999 * 24 15 14 44 44 H 1.09003 * 110.36599 * 265.28903 * 24 15 14 45 45 H 1.08996 * 109.47676 * 60.00058 * 28 27 25 46 46 H 1.09010 * 109.47308 * 180.02562 * 28 27 25 47 47 H 1.09002 * 109.46799 * 299.99570 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7491 2.5709 1.1821 6 6 4.6885 2.6996 2.2512 7 1 4.3364 2.1344 3.1142 8 6 6.0470 2.1555 1.8048 9 6 4.8277 4.1528 2.6252 10 8 4.2562 5.0034 1.9765 11 7 5.5871 4.5072 3.6807 12 6 5.7220 5.9199 4.0446 13 1 4.7838 6.4515 3.8856 14 6 6.8665 6.5819 3.2487 15 7 7.5719 7.4894 4.1653 16 6 8.6661 8.2501 3.8502 17 1 9.0816 8.2118 2.8540 18 6 9.2420 9.0695 4.8114 19 7 8.7366 9.1150 6.0258 20 14 10.7351 10.1066 4.3817 21 1 11.1058 9.8763 2.9623 22 1 10.4147 11.5426 4.5823 23 1 11.8713 9.7256 5.2586 24 6 6.9068 7.4443 5.4802 25 6 6.1948 6.0689 5.5174 26 1 6.8924 5.2751 5.7847 27 8 5.0821 6.0923 6.4136 28 6 5.4019 5.6935 7.7480 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5065 1.0921 35 1 2.4772 1.2355 2.1130 36 1 5.9463 1.1044 1.5343 37 1 6.3990 2.7207 0.9419 38 1 6.7636 2.2542 2.6203 39 1 6.0444 3.8270 4.1993 40 1 6.4571 7.1460 2.4106 41 1 7.5527 5.8187 2.8817 42 1 9.1387 9.6878 6.6973 43 1 7.6436 7.5120 6.2806 44 1 6.1785 8.2509 5.5648 45 1 6.1578 6.3642 8.1564 46 1 4.5047 5.7378 8.3655 47 1 5.7870 4.6738 7.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211992488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:52 Heat of formation + Delta-G solvation = -100.628289 kcal Electronic energy + Delta-G solvation = -26414.351291 eV Core-core repulsion = 22598.100700 eV Total energy + Delta-G solvation = -3816.250591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29526 -39.90237 -38.75376 -37.50859 -35.98204 -35.68309 -33.86472 -32.47290 -30.52651 -29.88271 -28.82415 -27.54494 -26.31174 -25.17327 -23.83448 -22.48419 -22.07180 -21.27776 -20.65078 -19.20981 -18.39233 -18.15253 -17.60802 -17.15194 -16.97152 -16.45414 -16.07328 -16.03097 -15.80074 -15.57268 -15.23940 -14.95252 -14.78527 -14.43226 -14.32567 -13.95867 -13.76739 -13.55048 -13.28949 -13.19378 -12.98355 -12.80474 -12.76433 -12.59404 -12.52213 -12.33913 -12.03216 -12.01144 -11.95656 -11.91806 -11.55424 -11.02425 -10.82133 -10.65095 -10.42742 -10.25439 -10.17219 -8.98719 -7.82175 -5.29400 1.34213 1.46497 1.48197 1.53904 1.58622 1.77668 2.43776 2.71865 2.87597 3.28821 3.51913 3.60747 3.83634 3.91267 3.96546 3.99615 4.03743 4.08454 4.17483 4.29619 4.34722 4.45429 4.46397 4.48605 4.61065 4.67367 4.70412 4.80559 4.83165 4.89660 4.90963 4.92197 5.04466 5.12035 5.22790 5.27939 5.40737 5.43694 5.67055 5.73283 5.87211 6.11251 6.17867 6.30349 6.52943 7.03594 7.20259 7.67727 8.30196 9.19527 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.002691 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.626038 B =10403.583942 C =11256.723738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.095 4.095 4 C 0.061 3.939 5 O -0.391 6.391 6 C 0.080 3.920 7 H 0.121 0.879 8 C -0.166 4.166 9 C 0.508 3.492 10 O -0.574 6.574 11 N -0.697 5.697 12 C 0.155 3.845 13 H 0.075 0.925 14 C 0.132 3.868 15 N -0.619 5.619 16 C -0.241 4.241 17 H 0.082 0.918 18 C -0.063 4.063 19 N -0.947 5.947 20 Si 0.984 3.016 21 H -0.268 1.268 22 H -0.294 1.294 23 H -0.285 1.285 24 C 0.144 3.856 25 C 0.079 3.921 26 H 0.094 0.906 27 O -0.396 6.396 28 C 0.027 3.973 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.418 0.582 40 H 0.011 0.989 41 H 0.044 0.956 42 H 0.250 0.750 43 H 0.090 0.910 44 H -0.013 1.013 45 H 0.034 0.966 46 H 0.103 0.897 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.481 -23.245 -2.996 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.132 4.132 4 C -0.015 4.015 5 O -0.310 6.310 6 C 0.019 3.981 7 H 0.138 0.862 8 C -0.223 4.223 9 C 0.295 3.705 10 O -0.452 6.452 11 N -0.351 5.351 12 C 0.049 3.951 13 H 0.093 0.907 14 C 0.005 3.995 15 N -0.346 5.346 16 C -0.370 4.370 17 H 0.100 0.900 18 C -0.256 4.256 19 N -0.596 5.596 20 Si 0.812 3.188 21 H -0.193 1.193 22 H -0.221 1.221 23 H -0.211 1.211 24 C 0.018 3.982 25 C 0.019 3.981 26 H 0.112 0.888 27 O -0.315 6.315 28 C -0.069 4.069 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.146 0.854 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.255 0.745 40 H 0.029 0.971 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.005 0.995 45 H 0.053 0.947 46 H 0.121 0.879 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.991 -22.325 -3.583 24.719 hybrid contribution 0.997 0.862 0.272 1.345 sum -8.994 -21.463 -3.311 23.506 Atomic orbital electron populations 1.24084 0.96050 1.02631 1.00027 1.22841 0.96091 0.97712 1.00832 1.20643 0.97794 0.96379 0.98413 1.22728 0.94240 0.85647 0.98898 1.88017 1.55023 1.39386 1.48614 1.21961 0.92648 0.90913 0.92597 0.86152 1.22249 0.94078 1.02868 1.03121 1.21261 0.77675 0.92047 0.79501 1.90711 1.47809 1.53895 1.52738 1.45659 1.50450 1.07533 1.31425 1.21618 0.97923 0.82371 0.93187 0.90717 1.21659 0.92482 0.92672 0.92656 1.44569 1.32073 1.49642 1.08364 1.19476 1.02996 1.17579 0.96928 0.90045 1.25660 1.02646 1.01325 0.95922 1.69987 1.43158 1.42866 1.03621 0.84925 0.78474 0.77589 0.77790 1.19269 1.22090 1.21132 1.22111 0.94497 0.91646 0.89939 1.23651 0.87829 0.98655 0.87925 0.88825 1.87838 1.33342 1.89188 1.21093 1.22981 1.02443 0.99324 0.82158 0.86701 0.89000 0.85363 0.92225 0.90447 0.90500 0.92333 0.88623 0.93079 0.89003 0.74460 0.97093 0.93804 0.94001 0.89224 0.99527 0.94746 0.87862 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 14.32 67.78 0.97 -1.32 16 2 C -0.16 -1.94 9.52 25.64 0.24 -1.69 16 3 C -0.09 -1.57 6.03 29.85 0.18 -1.39 16 4 C 0.06 0.99 5.73 71.98 0.41 1.40 16 5 O -0.39 -9.81 9.53 -129.99 -1.24 -11.05 16 6 C 0.08 1.66 3.13 29.85 0.09 1.75 16 7 H 0.12 1.63 7.79 -2.38 -0.02 1.61 16 8 C -0.17 -2.59 9.48 71.98 0.68 -1.90 16 9 C 0.51 15.72 7.18 87.66 0.63 16.35 16 10 O -0.57 -24.37 16.24 15.95 0.26 -24.11 16 11 N -0.70 -19.76 5.09 -436.51 -2.22 -21.98 16 12 C 0.16 5.93 2.98 46.27 0.14 6.06 16 13 H 0.07 3.29 7.70 -2.39 -0.02 3.27 16 14 C 0.13 5.92 6.98 86.73 0.61 6.53 16 15 N -0.62 -32.73 3.39 -691.97 -2.35 -35.08 16 16 C -0.24 -13.68 10.27 84.03 0.86 -12.82 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 19 N -0.95 -55.69 10.09 21.65 0.22 -55.47 16 20 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C 0.14 7.21 5.63 86.86 0.49 7.70 16 25 C 0.08 2.96 3.11 32.08 0.10 3.06 16 26 H 0.09 3.02 7.77 -2.39 -0.02 3.01 16 27 O -0.40 -13.96 10.52 -148.98 -1.57 -15.52 16 28 C 0.03 0.70 10.89 113.37 1.23 1.93 16 29 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 30 H 0.09 1.19 7.84 -2.91 -0.02 1.17 16 31 H 0.13 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.06 1.18 7.79 -2.39 -0.02 1.16 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.08 0.85 7.87 -2.38 -0.02 0.83 16 35 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.10 0.99 7.87 -2.39 -0.02 0.97 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.10 7.92 -2.38 -0.02 1.08 16 39 H 0.42 8.32 8.31 -92.71 -0.77 7.55 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.04 1.84 8.03 -2.39 -0.02 1.82 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.09 4.91 5.87 -2.39 -0.01 4.90 16 44 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 Total: -1.00 -77.14 388.53 2.40 -74.73 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.17 Total: 18.38 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 7.11 Total: 22.59 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -4.35 Total: -112.54 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -2.55 Total: -50.68 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.14 2.40 -74.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211992488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.894 kcal (2) G-P(sol) polarization free energy of solvation -77.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds