Wall clock time and date at job start Fri Apr 10 2020 18:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47158 * 2 1 4 4 C 1.42906 * 114.00089 * 175.55633 * 3 2 1 5 5 H 1.08997 * 109.47086 * 23.22775 * 4 3 2 6 6 C 1.50694 * 109.46938 * 143.23203 * 4 3 2 7 7 O 1.21281 * 120.00448 * 4.99996 * 6 4 3 8 8 N 1.34785 * 119.99679 * 184.99334 * 6 4 3 9 9 C 1.46501 * 119.99996 * 179.97438 * 8 6 4 10 10 H 1.08996 * 110.63763 * 31.86355 * 9 8 6 11 11 C 1.54320 * 110.71876 * 268.52568 * 9 8 6 12 12 N 1.47018 * 107.27074 * 219.44292 * 11 9 8 13 13 C 1.36936 * 125.64923 * 178.92061 * 12 11 9 14 14 H 1.08000 * 120.00146 * 0.02562 * 13 12 11 15 15 C 1.38820 * 120.00265 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99382 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47234 * 60.00367 * 17 15 13 19 19 H 1.48501 * 109.47129 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47071 * 299.99980 * 17 15 13 21 21 C 1.47421 * 108.70594 * 358.94227 * 12 11 9 22 22 C 1.54916 * 104.82941 * 24.12838 * 21 12 11 23 23 H 1.09002 * 111.03853 * 81.08028 * 22 21 12 24 24 O 1.42896 * 111.00441 * 204.91799 * 22 21 12 25 25 C 1.42905 * 113.99923 * 262.19735 * 24 22 21 26 26 C 1.53007 * 109.46679 * 263.22964 * 4 3 2 27 27 C 1.52999 * 117.49824 * 11.58876 * 26 4 3 28 28 C 1.52999 * 117.49918 * 302.92556 * 26 4 3 29 29 H 1.08996 * 109.46923 * 299.99906 * 1 2 3 30 30 H 1.08997 * 109.47085 * 60.00220 * 1 2 3 31 31 H 1.09004 * 109.46844 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47201 * 239.99902 * 2 1 3 33 33 H 1.08998 * 109.47578 * 120.00368 * 2 1 3 34 34 H 0.96995 * 119.99679 * 0.02562 * 8 6 4 35 35 H 1.08996 * 109.88844 * 338.86450 * 11 9 8 36 36 H 1.09004 * 109.88441 * 99.87138 * 11 9 8 37 37 H 0.97005 * 119.99592 * 179.97438 * 16 15 13 38 38 H 1.08997 * 110.37187 * 265.29275 * 21 12 11 39 39 H 1.08994 * 110.36956 * 142.96236 * 21 12 11 40 40 H 1.09004 * 109.46350 * 299.99598 * 25 24 22 41 41 H 1.08995 * 109.47207 * 60.00011 * 25 24 22 42 42 H 1.09001 * 109.47276 * 180.02562 * 25 24 22 43 43 H 1.08996 * 115.54666 * 157.25302 * 26 4 3 44 44 H 1.08997 * 117.50076 * 359.97438 * 27 26 4 45 45 H 1.08999 * 117.50093 * 145.01840 * 27 26 4 46 46 H 1.09001 * 117.49844 * 214.97782 * 28 26 4 47 47 H 1.09001 * 117.49931 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4272 1.4614 0.1011 5 1 3.8916 0.5389 -0.2474 6 6 3.9002 2.6137 -0.7471 7 8 3.0936 3.3281 -1.3038 8 7 5.2197 2.8504 -0.8869 9 6 5.6796 3.9703 -1.7119 10 1 4.9657 4.7931 -1.6752 11 6 5.9189 3.5144 -3.1667 12 7 7.1326 4.1937 -3.6429 13 6 7.6983 4.0426 -4.8808 14 1 7.2480 3.3773 -5.6027 15 6 8.8499 4.7451 -5.2082 16 7 9.3984 5.5562 -4.3286 17 14 9.6212 4.5394 -6.8971 18 1 8.6449 4.9452 -7.9399 19 1 10.8333 5.3917 -6.9949 20 1 9.9988 3.1175 -7.0989 21 6 7.6402 5.0643 -2.5669 22 6 7.0864 4.4434 -1.2601 23 1 7.6975 3.6002 -0.9379 24 8 6.9891 5.4261 -0.2273 25 6 8.0913 5.4246 0.6822 26 6 3.8163 1.7086 1.5601 27 6 2.7322 1.5170 2.6226 28 6 3.2062 2.9261 2.2574 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.8647 2.2789 -0.4418 35 1 6.0621 2.4344 -3.1980 36 1 5.0674 3.7934 -3.7875 37 1 10.2033 6.0469 -4.5572 38 1 7.2659 6.0803 -2.6925 39 1 8.7301 5.0591 -2.5571 40 1 8.1591 4.4518 1.1692 41 1 9.0135 5.6226 0.1359 42 1 7.9418 6.1980 1.4356 43 1 4.8369 1.4345 1.8273 44 1 1.7417 1.2154 2.2822 45 1 3.0396 1.1174 3.5889 46 1 3.8252 3.4528 2.9838 47 1 2.5279 3.5512 1.6767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212287243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:55 Heat of formation + Delta-G solvation = -65.400560 kcal Electronic energy + Delta-G solvation = -27266.217021 eV Core-core repulsion = 23451.494019 eV Total energy + Delta-G solvation = -3814.723002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23567 -38.74534 -37.61977 -36.19399 -35.88003 -33.99287 -31.89893 -31.51155 -29.12305 -28.14649 -26.65082 -26.06718 -24.17930 -23.20968 -22.42405 -21.73865 -20.62395 -20.34230 -19.72819 -17.58953 -17.07051 -16.89851 -16.52948 -16.28521 -15.38141 -15.12027 -14.95756 -14.66483 -14.38276 -14.23687 -14.11560 -13.67681 -13.21337 -12.97519 -12.80388 -12.61168 -12.40412 -12.22896 -11.86640 -11.71175 -11.51008 -11.43417 -11.34547 -11.27321 -11.02733 -10.81554 -10.78915 -10.70635 -10.54852 -10.22260 -9.93600 -9.89374 -9.81710 -9.35733 -9.05298 -8.70365 -8.61304 -6.90364 -5.69832 -3.12939 2.76948 2.91589 3.39112 3.43425 3.44695 3.52249 3.90260 4.13403 4.42033 4.49008 4.67615 4.68977 4.83913 4.93771 5.04008 5.08344 5.14975 5.19842 5.25124 5.42169 5.45059 5.49348 5.52622 5.61436 5.67854 5.68876 5.69448 5.74005 5.83873 5.88524 5.94323 5.98740 6.08842 6.09652 6.22582 6.49248 6.68554 6.84883 6.97608 7.26461 7.54893 7.69747 7.73857 7.80874 8.26451 8.44702 9.15672 9.76003 10.38717 11.33825 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.003446 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.832533 B = 8123.334905 C = 9355.823129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.104 3.896 5 H 0.089 0.911 6 C 0.518 3.482 7 O -0.519 6.519 8 N -0.712 5.712 9 C 0.137 3.863 10 H 0.103 0.897 11 C 0.130 3.870 12 N -0.600 5.600 13 C -0.224 4.224 14 H 0.080 0.920 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.918 3.082 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.142 3.858 22 C 0.056 3.944 23 H 0.066 0.934 24 O -0.379 6.379 25 C 0.036 3.964 26 C -0.183 4.183 27 C -0.167 4.167 28 C -0.162 4.162 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.396 0.604 35 H 0.029 0.971 36 H 0.033 0.967 37 H 0.254 0.746 38 H 0.027 0.973 39 H 0.112 0.888 40 H 0.032 0.968 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 -11.074 15.714 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.270 6.270 4 C 0.042 3.958 5 H 0.107 0.893 6 C 0.302 3.698 7 O -0.393 6.393 8 N -0.364 5.364 9 C 0.032 3.968 10 H 0.121 0.879 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.352 4.352 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.571 5.571 17 Si 0.748 3.252 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.211 1.211 21 C 0.016 3.984 22 C -0.004 4.004 23 H 0.084 0.916 24 O -0.297 6.297 25 C -0.061 4.061 26 C -0.202 4.202 27 C -0.203 4.203 28 C -0.199 4.199 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.229 0.771 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.130 0.870 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.126 -10.173 15.179 20.891 hybrid contribution 1.205 -0.784 -0.598 1.557 sum -8.922 -10.957 14.581 20.304 Atomic orbital electron populations 1.21727 0.93492 1.02131 1.03396 1.22635 0.95873 0.83737 1.00207 1.88039 1.18548 1.26185 1.94208 1.21338 0.83707 0.97652 0.93089 0.89318 1.20235 0.82695 0.85730 0.81146 1.90723 1.53616 1.47959 1.47044 1.45886 1.06431 1.32764 1.51280 1.22167 0.95857 0.88334 0.90429 0.87878 1.21601 0.90893 0.95954 0.91255 1.44290 1.25810 1.50035 1.12654 1.19054 1.05640 1.21686 0.88794 0.90257 1.24807 0.98291 0.98870 0.98575 1.69749 1.22530 1.31420 1.33443 0.86105 0.78538 0.77352 0.83217 1.21093 1.21536 1.21136 1.22295 1.02099 0.92126 0.81884 1.24036 0.94960 0.90971 0.90427 0.91578 1.87862 1.43616 1.57254 1.41004 1.22698 0.90305 1.00379 0.92752 1.22691 0.99012 1.06309 0.92179 1.22952 0.99046 1.00329 0.98011 1.22911 1.03346 0.90834 1.02770 0.91882 0.91556 0.91105 0.93197 0.93029 0.77063 0.95314 0.94896 0.93551 0.95535 0.87009 0.94891 0.93575 0.90348 0.86633 0.87969 0.88925 0.88720 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.48 5.64 37.16 0.21 0.69 16 3 O -0.35 -4.56 8.23 -55.09 -0.45 -5.01 16 4 C 0.10 1.24 2.97 -27.88 -0.08 1.16 16 5 H 0.09 0.85 7.74 -51.93 -0.40 0.44 16 6 C 0.52 8.26 6.90 -10.98 -0.08 8.18 16 7 O -0.52 -10.68 16.15 -14.30 -0.23 -10.91 16 8 N -0.71 -10.78 5.06 -52.03 -0.26 -11.04 16 9 C 0.14 2.61 3.05 -66.10 -0.20 2.41 16 10 H 0.10 2.21 7.55 -51.93 -0.39 1.82 16 11 C 0.13 2.85 6.99 -3.07 -0.02 2.83 16 12 N -0.60 -15.46 3.39 -170.08 -0.58 -16.04 16 13 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 14 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 15 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 16 N -0.92 -26.53 10.09 55.49 0.56 -25.97 16 17 Si 0.92 21.91 29.55 -169.99 -5.02 16.88 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C 0.14 3.45 5.62 -2.53 -0.01 3.44 16 22 C 0.06 1.06 3.17 -24.58 -0.08 0.99 16 23 H 0.07 1.16 7.70 -51.93 -0.40 0.76 16 24 O -0.38 -6.95 10.51 -35.23 -0.37 -7.32 16 25 C 0.04 0.50 10.85 101.05 1.10 1.60 16 26 C -0.18 -1.81 5.77 -90.62 -0.52 -2.34 16 27 C -0.17 -1.49 9.54 -26.69 -0.25 -1.75 16 28 C -0.16 -1.76 9.85 -26.69 -0.26 -2.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.05 0.39 7.57 -51.93 -0.39 -0.01 16 34 H 0.40 4.77 8.56 -40.82 -0.35 4.42 16 35 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 2.99 5.87 -51.93 -0.31 2.68 16 40 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 0.96 6.25 -51.93 -0.32 0.64 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -33.25 381.95 -8.70 -41.95 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.02 Total: 4.10 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.08 Total: 7.60 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.28 Total: -53.05 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.05 Total: -23.25 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.25 -8.70 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212287243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.450 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds