Wall clock time and date at job start Fri Apr 10 2020 18:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47158 * 2 1 4 4 C 1.42906 * 114.00089 * 175.55633 * 3 2 1 5 5 H 1.08997 * 109.47086 * 23.22775 * 4 3 2 6 6 C 1.50694 * 109.46938 * 143.23203 * 4 3 2 7 7 O 1.21281 * 120.00448 * 4.99996 * 6 4 3 8 8 N 1.34785 * 119.99679 * 184.99334 * 6 4 3 9 9 C 1.46501 * 119.99996 * 179.97438 * 8 6 4 10 10 H 1.08996 * 110.63763 * 31.86355 * 9 8 6 11 11 C 1.54320 * 110.71876 * 268.52568 * 9 8 6 12 12 N 1.47018 * 107.27074 * 219.44292 * 11 9 8 13 13 C 1.36936 * 125.64923 * 178.92061 * 12 11 9 14 14 H 1.08000 * 120.00146 * 0.02562 * 13 12 11 15 15 C 1.38820 * 120.00265 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99382 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47234 * 60.00367 * 17 15 13 19 19 H 1.48501 * 109.47129 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47071 * 299.99980 * 17 15 13 21 21 C 1.47421 * 108.70594 * 358.94227 * 12 11 9 22 22 C 1.54916 * 104.82941 * 24.12838 * 21 12 11 23 23 H 1.09002 * 111.03853 * 81.08028 * 22 21 12 24 24 O 1.42896 * 111.00441 * 204.91799 * 22 21 12 25 25 C 1.42905 * 113.99923 * 262.19735 * 24 22 21 26 26 C 1.53007 * 109.46679 * 263.22964 * 4 3 2 27 27 C 1.52999 * 117.49824 * 11.58876 * 26 4 3 28 28 C 1.52999 * 117.49918 * 302.92556 * 26 4 3 29 29 H 1.08996 * 109.46923 * 299.99906 * 1 2 3 30 30 H 1.08997 * 109.47085 * 60.00220 * 1 2 3 31 31 H 1.09004 * 109.46844 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47201 * 239.99902 * 2 1 3 33 33 H 1.08998 * 109.47578 * 120.00368 * 2 1 3 34 34 H 0.96995 * 119.99679 * 0.02562 * 8 6 4 35 35 H 1.08996 * 109.88844 * 338.86450 * 11 9 8 36 36 H 1.09004 * 109.88441 * 99.87138 * 11 9 8 37 37 H 0.97005 * 119.99592 * 179.97438 * 16 15 13 38 38 H 1.08997 * 110.37187 * 265.29275 * 21 12 11 39 39 H 1.08994 * 110.36956 * 142.96236 * 21 12 11 40 40 H 1.09004 * 109.46350 * 299.99598 * 25 24 22 41 41 H 1.08995 * 109.47207 * 60.00011 * 25 24 22 42 42 H 1.09001 * 109.47276 * 180.02562 * 25 24 22 43 43 H 1.08996 * 115.54666 * 157.25302 * 26 4 3 44 44 H 1.08997 * 117.50076 * 359.97438 * 27 26 4 45 45 H 1.08999 * 117.50093 * 145.01840 * 27 26 4 46 46 H 1.09001 * 117.49844 * 214.97782 * 28 26 4 47 47 H 1.09001 * 117.49931 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4272 1.4614 0.1011 5 1 3.8916 0.5389 -0.2474 6 6 3.9002 2.6137 -0.7471 7 8 3.0936 3.3281 -1.3038 8 7 5.2197 2.8504 -0.8869 9 6 5.6796 3.9703 -1.7119 10 1 4.9657 4.7931 -1.6752 11 6 5.9189 3.5144 -3.1667 12 7 7.1326 4.1937 -3.6429 13 6 7.6983 4.0426 -4.8808 14 1 7.2480 3.3773 -5.6027 15 6 8.8499 4.7451 -5.2082 16 7 9.3984 5.5562 -4.3286 17 14 9.6212 4.5394 -6.8971 18 1 8.6449 4.9452 -7.9399 19 1 10.8333 5.3917 -6.9949 20 1 9.9988 3.1175 -7.0989 21 6 7.6402 5.0643 -2.5669 22 6 7.0864 4.4434 -1.2601 23 1 7.6975 3.6002 -0.9379 24 8 6.9891 5.4261 -0.2273 25 6 8.0913 5.4246 0.6822 26 6 3.8163 1.7086 1.5601 27 6 2.7322 1.5170 2.6226 28 6 3.2062 2.9261 2.2574 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.8647 2.2789 -0.4418 35 1 6.0621 2.4344 -3.1980 36 1 5.0674 3.7934 -3.7875 37 1 10.2033 6.0469 -4.5572 38 1 7.2659 6.0803 -2.6925 39 1 8.7301 5.0591 -2.5571 40 1 8.1591 4.4518 1.1692 41 1 9.0135 5.6226 0.1359 42 1 7.9418 6.1980 1.4356 43 1 4.8369 1.4345 1.8273 44 1 1.7417 1.2154 2.2822 45 1 3.0396 1.1174 3.5889 46 1 3.8252 3.4528 2.9838 47 1 2.5279 3.5512 1.6767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212287243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:55 Heat of formation + Delta-G solvation = -88.193126 kcal Electronic energy + Delta-G solvation = -27267.205381 eV Core-core repulsion = 23451.494019 eV Total energy + Delta-G solvation = -3815.711362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43021 -40.09435 -38.89157 -37.50875 -36.98242 -35.60781 -33.72047 -32.33176 -30.76994 -29.52891 -28.16854 -27.46774 -25.95976 -23.93443 -23.21737 -22.86489 -22.30306 -21.79766 -21.03714 -19.20636 -18.31618 -18.11333 -17.76437 -17.44048 -17.10058 -16.40752 -16.05150 -15.80920 -15.74263 -15.61520 -15.46334 -15.05225 -14.70309 -14.59315 -13.95881 -13.73866 -13.56753 -13.46946 -13.18122 -13.12154 -13.02251 -12.69929 -12.56311 -12.41681 -12.34499 -12.29366 -12.10500 -12.07870 -11.90263 -11.65977 -11.56362 -11.29681 -10.80582 -10.77569 -10.63192 -10.39674 -10.08295 -8.98163 -7.81077 -5.28707 1.47150 1.50825 1.54430 1.57119 1.77121 2.44967 2.72343 2.75235 2.96385 3.29679 3.57901 3.60363 3.69451 3.84636 3.91551 3.95922 4.05821 4.18267 4.21916 4.25743 4.34780 4.36511 4.44035 4.47811 4.51872 4.61818 4.66950 4.81570 4.82530 4.84475 4.88938 4.91833 5.01258 5.04459 5.20154 5.27292 5.28593 5.35156 5.42625 5.43828 5.67826 6.11661 6.18694 6.32144 6.54407 7.03882 7.22011 7.68451 8.31119 9.20107 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.003446 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.832533 B = 8123.334905 C = 9355.823129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.382 6.382 4 C 0.109 3.891 5 H 0.121 0.879 6 C 0.514 3.486 7 O -0.574 6.574 8 N -0.695 5.695 9 C 0.153 3.847 10 H 0.074 0.926 11 C 0.131 3.869 12 N -0.618 5.618 13 C -0.246 4.246 14 H 0.083 0.917 15 C -0.061 4.061 16 N -0.947 5.947 17 Si 0.985 3.015 18 H -0.282 1.282 19 H -0.291 1.291 20 H -0.272 1.272 21 C 0.146 3.854 22 C 0.080 3.920 23 H 0.094 0.906 24 O -0.397 6.397 25 C 0.027 3.973 26 C -0.178 4.178 27 C -0.146 4.146 28 C -0.184 4.184 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.416 0.584 35 H 0.045 0.955 36 H 0.012 0.988 37 H 0.250 0.750 38 H -0.014 1.014 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.101 0.899 43 H 0.146 0.854 44 H 0.096 0.904 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 -13.887 17.590 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.301 6.301 4 C 0.047 3.953 5 H 0.139 0.861 6 C 0.301 3.699 7 O -0.452 6.452 8 N -0.348 5.348 9 C 0.047 3.953 10 H 0.092 0.908 11 C 0.005 3.995 12 N -0.346 5.346 13 C -0.375 4.375 14 H 0.100 0.900 15 C -0.254 4.254 16 N -0.596 5.596 17 Si 0.812 3.188 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.197 1.197 21 C 0.020 3.980 22 C 0.020 3.980 23 H 0.111 0.889 24 O -0.315 6.315 25 C -0.069 4.069 26 C -0.197 4.197 27 C -0.182 4.182 28 C -0.221 4.221 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.254 0.746 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.060 0.940 38 H 0.004 0.996 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.120 0.880 43 H 0.163 0.837 44 H 0.114 0.886 45 H 0.137 0.863 46 H 0.124 0.876 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.538 -13.032 17.097 23.518 hybrid contribution 0.957 0.140 -1.171 1.519 sum -8.581 -12.892 15.926 22.214 Atomic orbital electron populations 1.21760 0.93059 1.03456 1.02389 1.22875 0.96327 0.82306 1.01531 1.88026 1.19083 1.28600 1.94409 1.21379 0.83752 0.96588 0.93557 0.86103 1.21149 0.82076 0.86151 0.80536 1.90702 1.54979 1.50164 1.49329 1.45627 1.06991 1.31766 1.50456 1.21621 0.95268 0.88875 0.89538 0.90780 1.21665 0.88781 0.96423 0.92675 1.44535 1.26972 1.50358 1.12688 1.19429 1.06076 1.22008 0.89971 0.89954 1.25666 0.98782 0.98674 1.02256 1.69990 1.22590 1.31969 1.35035 0.85062 0.77257 0.77724 0.78708 1.20857 1.21691 1.19727 1.22065 1.00674 0.90630 0.84632 1.23604 0.94536 0.91287 0.88527 0.88852 1.87855 1.45362 1.57184 1.41111 1.22989 0.88509 1.03058 0.92324 1.22811 1.00759 1.05302 0.90819 1.23013 0.98504 0.98044 0.98672 1.22841 1.04010 0.91648 1.03605 0.92004 0.93465 0.88575 0.92814 0.90569 0.74637 0.93668 0.97018 0.94002 0.99620 0.89326 0.91826 0.94594 0.88036 0.83665 0.88559 0.86273 0.87640 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.74 5.64 71.98 0.41 1.15 16 3 O -0.38 -9.47 8.23 -129.99 -1.07 -10.54 16 4 C 0.11 2.34 2.97 29.85 0.09 2.43 16 5 H 0.12 1.83 7.74 -2.39 -0.02 1.81 16 6 C 0.51 16.08 6.90 87.65 0.60 16.68 16 7 O -0.57 -24.41 16.15 15.96 0.26 -24.15 16 8 N -0.70 -20.06 5.06 -436.92 -2.21 -22.27 16 9 C 0.15 5.91 3.05 46.18 0.14 6.05 16 10 H 0.07 3.33 7.55 -2.39 -0.02 3.31 16 11 C 0.13 5.86 6.99 86.73 0.61 6.47 16 12 N -0.62 -32.68 3.39 -692.01 -2.35 -35.03 16 13 C -0.25 -13.96 10.27 84.04 0.86 -13.10 16 14 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 15 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 16 N -0.95 -55.82 10.09 21.65 0.22 -55.60 16 17 Si 0.99 45.33 29.55 68.60 2.03 47.35 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 C 0.15 7.37 5.62 86.86 0.49 7.86 16 22 C 0.08 3.04 3.17 31.99 0.10 3.15 16 23 H 0.09 3.06 7.70 -2.39 -0.02 3.04 16 24 O -0.40 -14.28 10.51 -148.98 -1.57 -15.85 16 25 C 0.03 0.71 10.85 113.37 1.23 1.94 16 26 C -0.18 -2.94 5.77 -10.79 -0.06 -3.00 16 27 C -0.15 -2.15 9.54 30.62 0.29 -1.85 16 28 C -0.18 -3.75 9.85 30.62 0.30 -3.44 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 0.86 7.57 -2.39 -0.02 0.84 16 34 H 0.42 8.65 8.56 -92.71 -0.79 7.86 16 35 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 36 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 38 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.09 4.90 5.87 -2.39 -0.01 4.89 16 40 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.15 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.10 1.57 6.25 -2.39 -0.01 1.55 16 45 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -76.83 381.95 1.73 -75.10 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.16 Total: 21.12 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 6.27 Total: 19.88 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -4.34 Total: -112.91 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -2.38 Total: -50.54 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -76.83 1.73 -75.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212287243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.096 kcal (2) G-P(sol) polarization free energy of solvation -76.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds