Wall clock time and date at job start Fri Apr 10 2020 18:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47194 * 2 1 4 4 C 1.42890 * 113.99895 * 178.40236 * 3 2 1 5 5 H 1.09002 * 109.47613 * 16.60716 * 4 3 2 6 6 C 1.50700 * 109.47440 * 256.60426 * 4 3 2 7 7 O 1.21287 * 119.99562 * 355.00197 * 6 4 3 8 8 N 1.34772 * 120.00324 * 174.99813 * 6 4 3 9 9 C 1.46507 * 120.00127 * 180.02562 * 8 6 4 10 10 H 1.09003 * 110.63974 * 31.85628 * 9 8 6 11 11 C 1.54334 * 110.85017 * 268.69786 * 9 8 6 12 12 N 1.47023 * 107.26431 * 219.67312 * 11 9 8 13 13 C 1.36938 * 125.64745 * 178.85061 * 12 11 9 14 14 H 1.08002 * 119.99873 * 359.71235 * 13 12 11 15 15 C 1.38809 * 120.00123 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99790 * 359.72446 * 15 13 12 17 17 Si 1.86793 * 120.00478 * 179.72300 * 15 13 12 18 18 H 1.48502 * 109.46769 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47315 * 119.99858 * 17 15 13 20 20 H 1.48498 * 109.47255 * 240.00092 * 17 15 13 21 21 C 1.47418 * 108.70368 * 358.57912 * 12 11 9 22 22 C 1.54915 * 104.83017 * 24.35841 * 21 12 11 23 23 H 1.08997 * 111.00296 * 81.10356 * 22 21 12 24 24 O 1.42902 * 111.00211 * 204.91028 * 22 21 12 25 25 C 1.42899 * 114.00471 * 268.54687 * 24 22 21 26 26 C 1.53002 * 109.47449 * 136.60618 * 4 3 2 27 27 C 1.52998 * 117.49392 * 2.66933 * 26 4 3 28 28 C 1.52993 * 60.00134 * 252.51061 * 27 26 4 29 29 H 1.09003 * 109.47594 * 59.99763 * 1 2 3 30 30 H 1.09000 * 109.47577 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46864 * 300.00028 * 1 2 3 32 32 H 1.09005 * 109.46864 * 239.99972 * 2 1 3 33 33 H 1.08995 * 109.47184 * 119.99784 * 2 1 3 34 34 H 0.96995 * 120.00218 * 0.02562 * 8 6 4 35 35 H 1.08996 * 109.99646 * 100.19184 * 11 9 8 36 36 H 1.09003 * 109.77878 * 339.02287 * 11 9 8 37 37 H 0.96996 * 120.00393 * 179.97438 * 16 15 13 38 38 H 1.08998 * 110.37063 * 143.19453 * 21 12 11 39 39 H 1.09001 * 110.37134 * 265.52196 * 21 12 11 40 40 H 1.09001 * 109.47111 * 180.02562 * 25 24 22 41 41 H 1.08997 * 109.46932 * 300.00397 * 25 24 22 42 42 H 1.08997 * 109.47113 * 60.00177 * 25 24 22 43 43 H 1.08995 * 115.55425 * 148.37808 * 26 4 3 44 44 H 1.08999 * 117.50510 * 0.02562 * 27 26 4 45 45 H 1.09002 * 117.49893 * 145.02446 * 27 26 4 46 46 H 1.09000 * 117.50415 * 252.50963 * 28 27 26 47 47 H 1.09001 * 117.51718 * 107.47915 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4303 1.4603 0.0364 5 1 3.8778 0.5046 -0.2368 6 6 3.8687 1.8409 1.4270 7 8 3.0402 2.0884 2.2776 8 7 5.1813 1.9063 1.7256 9 6 5.6075 2.2759 3.0778 10 1 4.8835 1.9317 3.8164 11 6 5.8171 3.8008 3.1901 12 7 7.0138 4.0170 4.0164 13 6 7.5529 5.2343 4.3371 14 1 7.0954 6.1411 3.9699 15 6 8.6906 5.3025 5.1295 16 7 9.2480 4.1973 5.5771 17 14 9.4306 6.9625 5.5606 18 1 8.6222 8.0414 4.9379 19 1 9.4345 7.1347 7.0355 20 1 10.8235 7.0311 5.0504 21 6 7.5334 2.7067 4.4478 22 6 7.0175 1.7057 3.3841 23 1 7.6475 1.7214 2.4948 24 8 6.9300 0.3851 3.9232 25 6 8.1112 -0.3976 3.7384 26 6 3.8821 2.5362 -0.9531 27 6 2.7946 3.3001 -1.7112 28 6 3.6545 2.2671 -2.4420 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8439 1.7088 1.0454 35 1 4.9509 4.2621 3.6643 36 1 5.9697 4.2262 2.1982 37 1 10.0431 4.2448 6.1305 38 1 8.6233 2.7167 4.4621 39 1 7.1427 2.4490 5.4322 40 1 7.9643 -1.3856 4.1746 41 1 8.3173 -0.4982 2.6728 42 1 8.9528 0.0939 4.2264 43 1 4.7808 3.0854 -0.6726 44 1 1.7573 3.0365 -1.5047 45 1 2.9777 4.3523 -1.9294 46 1 4.4034 2.6395 -3.1410 47 1 3.1834 1.3233 -2.7165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212287244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:58 Heat of formation + Delta-G solvation = -67.096893 kcal Electronic energy + Delta-G solvation = -27181.694646 eV Core-core repulsion = 23366.898086 eV Total energy + Delta-G solvation = -3814.796560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.19371 -38.68904 -37.57881 -36.42227 -35.87615 -34.00543 -31.89263 -31.45032 -29.15657 -28.13977 -26.64400 -26.11310 -24.16419 -23.15353 -22.37552 -21.62531 -20.65532 -20.50089 -19.74481 -17.84718 -17.06824 -16.85743 -16.29269 -16.03121 -15.41415 -15.20654 -15.17723 -14.66424 -14.32709 -14.30948 -13.96406 -13.71627 -13.22982 -13.00933 -12.95507 -12.65262 -12.27213 -12.13057 -11.87663 -11.66620 -11.57621 -11.42644 -11.37952 -11.30271 -11.02715 -10.85377 -10.81484 -10.70576 -10.38542 -10.25402 -10.16399 -9.89506 -9.80890 -9.28593 -9.00774 -8.71864 -8.65439 -6.91003 -5.70888 -3.13850 2.70968 3.03089 3.37631 3.43537 3.46005 3.59959 3.73484 4.11303 4.44252 4.49937 4.65336 4.67836 4.85480 4.96344 4.99917 5.07483 5.16746 5.21783 5.31904 5.41831 5.47592 5.49839 5.50552 5.61002 5.67981 5.68603 5.72176 5.76784 5.84495 5.92732 5.94654 5.95543 6.07531 6.12402 6.20635 6.48144 6.68443 6.84999 6.96292 7.24523 7.54699 7.68702 7.72381 7.78747 8.25363 8.42931 9.14887 9.75232 10.37741 11.32977 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.003455 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.336443 B = 8102.965408 C = 8958.059767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.351 6.351 4 C 0.107 3.893 5 H 0.088 0.912 6 C 0.498 3.502 7 O -0.521 6.521 8 N -0.714 5.714 9 C 0.137 3.863 10 H 0.102 0.898 11 C 0.131 3.869 12 N -0.600 5.600 13 C -0.221 4.221 14 H 0.081 0.919 15 C -0.011 4.011 16 N -0.923 5.923 17 Si 0.917 3.083 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.139 3.861 22 C 0.055 3.945 23 H 0.066 0.934 24 O -0.382 6.382 25 C 0.035 3.965 26 C -0.165 4.165 27 C -0.156 4.156 28 C -0.172 4.172 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.396 0.604 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.253 0.747 38 H 0.113 0.887 39 H 0.026 0.974 40 H 0.078 0.922 41 H 0.033 0.967 42 H 0.047 0.953 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 -10.889 -15.622 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.045 3.955 5 H 0.106 0.894 6 C 0.283 3.717 7 O -0.395 6.395 8 N -0.367 5.367 9 C 0.033 3.967 10 H 0.120 0.880 11 C 0.004 3.996 12 N -0.328 5.328 13 C -0.349 4.349 14 H 0.099 0.901 15 C -0.206 4.206 16 N -0.572 5.572 17 Si 0.748 3.252 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.217 1.217 21 C 0.014 3.986 22 C -0.005 4.005 23 H 0.084 0.916 24 O -0.300 6.300 25 C -0.062 4.062 26 C -0.184 4.184 27 C -0.193 4.193 28 C -0.209 4.209 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.230 0.770 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.130 0.870 39 H 0.044 0.956 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.138 0.862 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.666 -10.533 -14.790 20.570 hybrid contribution 1.218 0.529 -0.084 1.331 sum -8.447 -10.003 -14.874 19.816 Atomic orbital electron populations 1.21710 0.93451 1.02153 1.03316 1.22613 0.96029 0.83678 0.99942 1.88010 1.18325 1.26350 1.94209 1.21344 0.83448 0.98942 0.91729 0.89396 1.20966 0.82738 0.77802 0.90224 1.90718 1.51884 1.47725 1.49221 1.46006 1.06829 1.70363 1.13469 1.22113 0.96002 0.95509 0.83104 0.87993 1.21603 0.91143 0.91598 0.95271 1.44318 1.27396 1.02632 1.58470 1.19152 1.06633 0.83415 1.25741 0.90133 1.24804 0.98361 0.97557 0.99909 1.69761 1.22996 1.24759 1.39661 0.85954 0.78761 0.82624 0.77909 1.20446 1.21660 1.21733 1.22333 1.02324 0.81692 0.92289 1.24023 0.95130 0.83279 0.98049 0.91613 1.87843 1.36768 1.24913 1.80472 1.22692 0.88645 0.95396 0.99446 1.22394 1.02129 1.01623 0.92258 1.22874 0.97516 0.97015 1.01880 1.22963 1.03504 1.01246 0.93196 0.91947 0.91165 0.91464 0.93440 0.93129 0.76965 0.94866 0.95208 0.93668 0.86976 0.95611 0.90367 0.94840 0.93389 0.86210 0.87390 0.88776 0.88479 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.05 0.54 6.39 37.16 0.24 0.78 16 3 O -0.35 -4.53 7.88 -55.09 -0.43 -4.96 16 4 C 0.11 1.28 2.94 -27.88 -0.08 1.20 16 5 H 0.09 0.83 7.68 -51.93 -0.40 0.43 16 6 C 0.50 7.93 7.14 -10.99 -0.08 7.85 16 7 O -0.52 -10.66 16.15 -14.31 -0.23 -10.89 16 8 N -0.71 -10.81 4.98 -52.03 -0.26 -11.07 16 9 C 0.14 2.63 3.04 -66.09 -0.20 2.42 16 10 H 0.10 2.18 7.55 -51.93 -0.39 1.79 16 11 C 0.13 2.87 7.01 -3.06 -0.02 2.85 16 12 N -0.60 -15.46 3.39 -170.07 -0.58 -16.03 16 13 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 14 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 15 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 16 N -0.92 -26.50 10.09 55.49 0.56 -25.94 16 17 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.14 3.39 5.63 -2.53 -0.01 3.38 16 22 C 0.05 1.05 3.12 -24.59 -0.08 0.97 16 23 H 0.07 1.16 7.77 -51.93 -0.40 0.76 16 24 O -0.38 -6.99 10.51 -35.23 -0.37 -7.36 16 25 C 0.03 0.50 10.89 101.05 1.10 1.60 16 26 C -0.17 -1.74 5.71 -90.62 -0.52 -2.26 16 27 C -0.16 -1.59 9.86 -26.74 -0.26 -1.85 16 28 C -0.17 -1.44 10.24 -26.74 -0.27 -1.71 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 4.79 8.56 -40.82 -0.35 4.44 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 37 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.11 2.99 5.87 -51.93 -0.30 2.68 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.12 1.26 7.98 -51.93 -0.41 0.85 16 44 H 0.11 1.20 7.02 -51.93 -0.36 0.83 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -33.15 384.31 -8.69 -41.84 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.08 Total: 4.11 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.06 Total: 7.60 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.28 Total: -53.05 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -1.04 Total: -23.21 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.15 -8.69 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212287244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.258 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds