Wall clock time and date at job start Fri Apr 10 2020 18:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42902 * 109.46917 * 2 1 4 4 C 1.42899 * 113.99347 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46879 * 180.02562 * 4 3 2 6 6 C 1.50701 * 115.54714 * 294.84962 * 5 4 3 7 7 O 1.21275 * 120.00302 * 89.55135 * 6 5 4 8 8 N 1.34781 * 119.99369 * 269.26964 * 6 5 4 9 9 C 1.46503 * 119.99656 * 185.01849 * 8 6 5 10 10 H 1.08997 * 110.64314 * 36.68973 * 9 8 6 11 11 C 1.54330 * 110.71995 * 273.54658 * 9 8 6 12 12 N 1.47019 * 107.27046 * 219.44353 * 11 9 8 13 13 C 1.36939 * 125.64443 * 178.97330 * 12 11 9 14 14 H 1.07998 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99782 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00002 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00109 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47042 * 59.99671 * 17 15 13 19 19 H 1.48492 * 109.47148 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47032 * 300.00162 * 17 15 13 21 21 C 1.47416 * 108.70483 * 358.94422 * 12 11 9 22 22 C 1.54911 * 104.83274 * 24.12660 * 21 12 11 23 23 H 1.09002 * 111.00499 * 81.06817 * 22 21 12 24 24 O 1.42899 * 111.00327 * 204.91509 * 22 21 12 25 25 C 1.42900 * 114.00368 * 262.19446 * 24 22 21 26 26 C 1.53001 * 117.51612 * 80.54436 * 5 4 3 27 27 C 1.52996 * 117.50180 * 149.17319 * 5 4 3 28 28 H 1.09004 * 109.46725 * 299.99945 * 1 2 3 29 29 H 1.08994 * 109.47158 * 59.99706 * 1 2 3 30 30 H 1.08993 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46642 * 239.99867 * 2 1 3 32 32 H 1.08999 * 109.46808 * 119.99991 * 2 1 3 33 33 H 1.08997 * 109.47364 * 59.99843 * 4 3 2 34 34 H 1.09003 * 109.47231 * 299.99788 * 4 3 2 35 35 H 0.97000 * 120.00202 * 5.02720 * 8 6 5 36 36 H 1.08997 * 109.88051 * 338.86418 * 11 9 8 37 37 H 1.08999 * 109.87824 * 100.02949 * 11 9 8 38 38 H 0.97002 * 119.99777 * 180.02562 * 16 15 13 39 39 H 1.09005 * 110.36792 * 142.96795 * 21 12 11 40 40 H 1.08998 * 110.36703 * 265.17467 * 21 12 11 41 41 H 1.09001 * 109.46634 * 60.00398 * 25 24 22 42 42 H 1.08996 * 109.47269 * 179.97438 * 25 24 22 43 43 H 1.09001 * 109.47092 * 300.00383 * 25 24 22 44 44 H 1.09005 * 117.49661 * 214.97029 * 26 5 4 45 45 H 1.08996 * 117.50194 * 359.97438 * 26 5 4 46 46 H 1.08999 * 117.49809 * 359.97438 * 27 5 4 47 47 H 1.09004 * 117.50123 * 144.99273 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 3.4405 3.7143 -1.2330 7 8 2.3616 4.2653 -1.2906 8 7 4.2975 3.8007 -2.2697 9 6 3.9705 4.6442 -3.4220 10 1 3.4550 5.5496 -3.1016 11 6 3.1188 3.8641 -4.4456 12 7 3.5888 4.2454 -5.7854 13 6 3.1035 3.7587 -6.9698 14 1 2.3061 3.0303 -6.9681 15 6 3.6364 4.2017 -8.1726 16 7 4.6084 5.0890 -8.1746 17 14 2.9739 3.5384 -9.7883 18 1 1.5274 3.8562 -9.8980 19 1 3.7052 4.1660 -10.9181 20 1 3.1619 2.0660 -9.8332 21 6 4.6685 5.2388 -5.6427 22 6 5.2497 4.9923 -4.2280 23 1 5.9483 4.1556 -4.2329 24 8 5.8717 6.1730 -3.7170 25 6 7.2904 6.2021 -3.8854 26 6 3.7930 3.6780 1.3391 27 6 5.1339 3.3200 0.6952 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8333 0.9766 -0.8908 34 1 3.8341 0.9764 0.8892 35 1 5.1307 3.3043 -2.2528 36 1 3.2507 2.7924 -4.2974 37 1 2.0677 4.1295 -4.3320 38 1 4.9805 5.3988 -9.0152 39 1 5.4349 5.0778 -6.4010 40 1 4.2669 6.2492 -5.7189 41 1 7.5315 6.1454 -4.9469 42 1 7.6864 7.1298 -3.4724 43 1 7.7355 5.3535 -3.3658 44 1 3.4933 4.7260 1.3280 45 1 3.4901 3.1116 2.2197 46 1 5.7135 2.5180 1.1523 47 1 5.7165 4.1323 0.2605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212484907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:01 Heat of formation + Delta-G solvation = -67.414313 kcal Electronic energy + Delta-G solvation = -27161.825118 eV Core-core repulsion = 23347.014793 eV Total energy + Delta-G solvation = -3814.810325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.15519 -38.57080 -37.75460 -36.42001 -35.82001 -33.94166 -31.70324 -31.45077 -28.84428 -27.49552 -26.93603 -26.08248 -24.50026 -23.07351 -22.82674 -22.52949 -20.63585 -20.08994 -19.33708 -17.49218 -16.92848 -16.52899 -16.45481 -16.02147 -15.62143 -15.43700 -14.97523 -14.50216 -14.31475 -14.18578 -13.93484 -13.52638 -13.42780 -13.17229 -12.89016 -12.63436 -12.24433 -12.16250 -11.85708 -11.77123 -11.64201 -11.42198 -11.33796 -11.26008 -11.02249 -10.86225 -10.79902 -10.70487 -10.41275 -10.20642 -9.89611 -9.79864 -9.74992 -9.50862 -9.01149 -8.68716 -8.62453 -6.88051 -5.68055 -3.10814 2.84364 3.07952 3.33717 3.40590 3.44554 3.46118 3.80850 4.12485 4.44467 4.50277 4.62541 4.71409 4.85786 4.90652 5.03108 5.18225 5.21267 5.24389 5.37718 5.38713 5.43419 5.49576 5.53910 5.60520 5.61384 5.69884 5.70736 5.72357 5.78708 5.85623 5.90141 5.93906 6.02179 6.10419 6.24791 6.54479 6.75235 6.94357 7.07570 7.26824 7.57123 7.72648 7.76315 7.82386 8.28321 8.51268 9.17773 9.78092 10.41010 11.35738 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.004002 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.688415 B = 6994.032075 C = 8839.364025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.374 6.374 4 C 0.109 3.891 5 C -0.156 4.156 6 C 0.552 3.448 7 O -0.522 6.522 8 N -0.714 5.714 9 C 0.137 3.863 10 H 0.099 0.901 11 C 0.132 3.868 12 N -0.601 5.601 13 C -0.222 4.222 14 H 0.079 0.921 15 C -0.010 4.010 16 N -0.924 5.924 17 Si 0.917 3.083 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.142 3.858 22 C 0.056 3.944 23 H 0.067 0.933 24 O -0.381 6.381 25 C 0.035 3.965 26 C -0.136 4.136 27 C -0.158 4.158 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.396 0.604 36 H 0.029 0.971 37 H 0.034 0.966 38 H 0.253 0.747 39 H 0.112 0.888 40 H 0.026 0.974 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.033 0.967 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 -7.472 18.698 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.293 6.293 4 C 0.032 3.968 5 C -0.160 4.160 6 C 0.337 3.663 7 O -0.396 6.396 8 N -0.365 5.365 9 C 0.033 3.967 10 H 0.117 0.883 11 C 0.004 3.996 12 N -0.329 5.329 13 C -0.350 4.350 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.572 5.572 17 Si 0.747 3.253 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.212 1.212 21 C 0.016 3.984 22 C -0.004 4.004 23 H 0.085 0.915 24 O -0.299 6.299 25 C -0.062 4.062 26 C -0.173 4.173 27 C -0.196 4.196 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.230 0.770 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.453 -6.707 18.510 19.988 hybrid contribution 0.415 -1.030 -0.982 1.482 sum 3.868 -7.736 17.528 19.546 Atomic orbital electron populations 1.21727 0.93621 1.02010 1.03480 1.22464 0.95906 0.83836 0.99784 1.88052 1.19985 1.25999 1.95294 1.21758 0.82470 0.91977 1.00579 1.21330 1.04267 0.95940 0.94428 1.19247 0.84138 0.80154 0.82785 1.90710 1.21822 1.45878 1.81189 1.45996 1.22812 1.48891 1.18797 1.22154 0.96160 0.93697 0.84712 0.88329 1.21600 0.96342 0.96336 0.85276 1.44307 1.40326 1.48326 0.99905 1.19057 1.14684 1.19048 0.82217 0.90287 1.24791 0.98909 0.99103 0.97738 1.69741 1.28513 1.34009 1.24975 0.86113 0.78206 0.78149 0.82805 1.21106 1.21530 1.21152 1.22286 0.92975 0.92177 0.90953 1.24033 0.92851 0.86759 0.96733 0.91515 1.87851 1.19581 1.41099 1.81344 1.22704 0.81770 1.00988 1.00719 1.22924 0.98867 1.01595 0.93923 1.23150 0.90095 1.03739 1.02566 0.91898 0.91509 0.91241 0.93380 0.93674 0.92518 0.92474 0.77037 0.95340 0.94803 0.93584 0.87006 0.95566 0.93546 0.90324 0.94837 0.87953 0.87806 0.87798 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 37.16 0.38 -1.09 16 2 C 0.06 0.59 6.66 37.16 0.25 0.83 16 3 O -0.37 -5.14 10.27 -35.23 -0.36 -5.50 16 4 C 0.11 1.21 5.76 37.16 0.21 1.43 16 5 C -0.16 -1.89 2.12 -155.66 -0.33 -2.22 16 6 C 0.55 9.12 6.87 -10.98 -0.08 9.04 16 7 O -0.52 -10.99 16.87 5.56 0.09 -10.90 16 8 N -0.71 -11.25 5.12 -52.03 -0.27 -11.51 16 9 C 0.14 2.68 2.94 -66.09 -0.19 2.49 16 10 H 0.10 2.12 7.77 -51.93 -0.40 1.72 16 11 C 0.13 2.98 6.99 -3.06 -0.02 2.96 16 12 N -0.60 -15.74 3.39 -170.08 -0.58 -16.31 16 13 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 14 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 15 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 17 Si 0.92 22.09 29.55 -169.99 -5.02 17.06 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 C 0.14 3.49 5.62 -2.53 -0.01 3.48 16 22 C 0.06 1.08 3.15 -24.58 -0.08 1.00 16 23 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 24 O -0.38 -6.94 10.51 -35.23 -0.37 -7.31 16 25 C 0.04 0.49 10.85 101.05 1.10 1.59 16 26 C -0.14 -1.41 9.95 -26.73 -0.27 -1.68 16 27 C -0.16 -1.37 9.92 -26.73 -0.27 -1.63 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.40 5.08 8.52 -40.82 -0.35 4.73 16 36 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.11 3.01 5.87 -51.93 -0.30 2.71 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 44 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -33.97 388.22 -7.83 -41.80 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.18 Total: 3.58 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 0.45 Total: 9.40 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.28 Total: -53.98 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.64 Total: -23.71 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.97 -7.83 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212484907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.618 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds