Wall clock time and date at job start Fri Apr 10 2020 18:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42902 * 109.46917 * 2 1 4 4 C 1.42899 * 113.99347 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46879 * 180.02562 * 4 3 2 6 6 C 1.50701 * 115.54714 * 294.84962 * 5 4 3 7 7 O 1.21275 * 120.00302 * 89.55135 * 6 5 4 8 8 N 1.34781 * 119.99369 * 269.26964 * 6 5 4 9 9 C 1.46503 * 119.99656 * 185.01849 * 8 6 5 10 10 H 1.08997 * 110.64314 * 36.68973 * 9 8 6 11 11 C 1.54330 * 110.71995 * 273.54658 * 9 8 6 12 12 N 1.47019 * 107.27046 * 219.44353 * 11 9 8 13 13 C 1.36939 * 125.64443 * 178.97330 * 12 11 9 14 14 H 1.07998 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99782 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00002 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00109 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47042 * 59.99671 * 17 15 13 19 19 H 1.48492 * 109.47148 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47032 * 300.00162 * 17 15 13 21 21 C 1.47416 * 108.70483 * 358.94422 * 12 11 9 22 22 C 1.54911 * 104.83274 * 24.12660 * 21 12 11 23 23 H 1.09002 * 111.00499 * 81.06817 * 22 21 12 24 24 O 1.42899 * 111.00327 * 204.91509 * 22 21 12 25 25 C 1.42900 * 114.00368 * 262.19446 * 24 22 21 26 26 C 1.53001 * 117.51612 * 80.54436 * 5 4 3 27 27 C 1.52996 * 117.50180 * 149.17319 * 5 4 3 28 28 H 1.09004 * 109.46725 * 299.99945 * 1 2 3 29 29 H 1.08994 * 109.47158 * 59.99706 * 1 2 3 30 30 H 1.08993 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46642 * 239.99867 * 2 1 3 32 32 H 1.08999 * 109.46808 * 119.99991 * 2 1 3 33 33 H 1.08997 * 109.47364 * 59.99843 * 4 3 2 34 34 H 1.09003 * 109.47231 * 299.99788 * 4 3 2 35 35 H 0.97000 * 120.00202 * 5.02720 * 8 6 5 36 36 H 1.08997 * 109.88051 * 338.86418 * 11 9 8 37 37 H 1.08999 * 109.87824 * 100.02949 * 11 9 8 38 38 H 0.97002 * 119.99777 * 180.02562 * 16 15 13 39 39 H 1.09005 * 110.36792 * 142.96795 * 21 12 11 40 40 H 1.08998 * 110.36703 * 265.17467 * 21 12 11 41 41 H 1.09001 * 109.46634 * 60.00398 * 25 24 22 42 42 H 1.08996 * 109.47269 * 179.97438 * 25 24 22 43 43 H 1.09001 * 109.47092 * 300.00383 * 25 24 22 44 44 H 1.09005 * 117.49661 * 214.97029 * 26 5 4 45 45 H 1.08996 * 117.50194 * 359.97438 * 26 5 4 46 46 H 1.08999 * 117.49809 * 359.97438 * 27 5 4 47 47 H 1.09004 * 117.50123 * 144.99273 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 3.4405 3.7143 -1.2330 7 8 2.3616 4.2653 -1.2906 8 7 4.2975 3.8007 -2.2697 9 6 3.9705 4.6442 -3.4220 10 1 3.4550 5.5496 -3.1016 11 6 3.1188 3.8641 -4.4456 12 7 3.5888 4.2454 -5.7854 13 6 3.1035 3.7587 -6.9698 14 1 2.3061 3.0303 -6.9681 15 6 3.6364 4.2017 -8.1726 16 7 4.6084 5.0890 -8.1746 17 14 2.9739 3.5384 -9.7883 18 1 1.5274 3.8562 -9.8980 19 1 3.7052 4.1660 -10.9181 20 1 3.1619 2.0660 -9.8332 21 6 4.6685 5.2388 -5.6427 22 6 5.2497 4.9923 -4.2280 23 1 5.9483 4.1556 -4.2329 24 8 5.8717 6.1730 -3.7170 25 6 7.2904 6.2021 -3.8854 26 6 3.7930 3.6780 1.3391 27 6 5.1339 3.3200 0.6952 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8333 0.9766 -0.8908 34 1 3.8341 0.9764 0.8892 35 1 5.1307 3.3043 -2.2528 36 1 3.2507 2.7924 -4.2974 37 1 2.0677 4.1295 -4.3320 38 1 4.9805 5.3988 -9.0152 39 1 5.4349 5.0778 -6.4010 40 1 4.2669 6.2492 -5.7189 41 1 7.5315 6.1454 -4.9469 42 1 7.6864 7.1298 -3.4724 43 1 7.7355 5.3535 -3.3658 44 1 3.4933 4.7260 1.3280 45 1 3.4901 3.1116 2.2197 46 1 5.7135 2.5180 1.1523 47 1 5.7165 4.1323 0.2605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212484907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:00 Heat of formation + Delta-G solvation = -92.321863 kcal Electronic energy + Delta-G solvation = -27162.905190 eV Core-core repulsion = 23347.014793 eV Total energy + Delta-G solvation = -3815.890397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41095 -39.97606 -38.87007 -37.59195 -37.25775 -35.61529 -33.64515 -32.22127 -30.64407 -29.03828 -28.02561 -27.50465 -26.25101 -24.26065 -23.73371 -23.26482 -22.41187 -21.77484 -20.63808 -19.11422 -18.28381 -18.00434 -17.41315 -17.17716 -16.90753 -16.69786 -16.51826 -15.89426 -15.75580 -15.58881 -15.18538 -15.03885 -14.62583 -14.45722 -14.20657 -13.96076 -13.76438 -13.40874 -13.20395 -13.13006 -13.02401 -12.71489 -12.59249 -12.45790 -12.39477 -12.35177 -12.13899 -12.10357 -11.91838 -11.64179 -11.60639 -11.23436 -10.86814 -10.80675 -10.58963 -10.44843 -10.14671 -9.00113 -7.82525 -5.30308 1.45818 1.49683 1.55931 1.57460 1.97616 2.37428 2.43865 2.72929 3.03113 3.27907 3.52765 3.60017 3.66699 3.80085 3.92405 3.93843 4.03441 4.06952 4.16035 4.29823 4.31294 4.45112 4.46986 4.49111 4.59703 4.61089 4.66686 4.73985 4.78797 4.81021 4.84688 4.89106 4.93007 4.98832 5.01626 5.19836 5.24457 5.26826 5.41656 5.42540 5.65874 6.16957 6.29519 6.29938 6.53705 7.02661 7.23794 7.66599 8.29476 9.18704 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.004002 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.688415 B = 6994.032075 C = 8839.364025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.413 6.413 4 C 0.107 3.893 5 C -0.177 4.177 6 C 0.549 3.451 7 O -0.577 6.577 8 N -0.699 5.699 9 C 0.154 3.846 10 H 0.074 0.926 11 C 0.134 3.866 12 N -0.618 5.618 13 C -0.248 4.248 14 H 0.079 0.921 15 C -0.058 4.058 16 N -0.946 5.946 17 Si 0.985 3.015 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.272 1.272 21 C 0.146 3.854 22 C 0.082 3.918 23 H 0.093 0.907 24 O -0.396 6.396 25 C 0.026 3.974 26 C -0.142 4.142 27 C -0.122 4.122 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.415 0.585 36 H 0.037 0.963 37 H 0.008 0.992 38 H 0.251 0.749 39 H 0.090 0.910 40 H -0.012 1.012 41 H 0.035 0.965 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.124 0.876 46 H 0.142 0.858 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 -9.507 20.503 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.333 6.333 4 C 0.030 3.970 5 C -0.180 4.180 6 C 0.336 3.664 7 O -0.455 6.455 8 N -0.351 5.351 9 C 0.047 3.953 10 H 0.092 0.908 11 C 0.007 3.993 12 N -0.346 5.346 13 C -0.377 4.377 14 H 0.097 0.903 15 C -0.251 4.251 16 N -0.595 5.595 17 Si 0.812 3.188 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.198 1.198 21 C 0.020 3.980 22 C 0.022 3.978 23 H 0.110 0.890 24 O -0.314 6.314 25 C -0.070 4.070 26 C -0.180 4.180 27 C -0.159 4.159 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.252 0.748 36 H 0.055 0.945 37 H 0.027 0.973 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.006 0.994 41 H 0.054 0.946 42 H 0.122 0.878 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.142 0.858 46 H 0.160 0.840 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.556 -8.767 20.348 22.842 hybrid contribution -0.239 -0.334 -1.530 1.584 sum 5.317 -9.101 18.817 21.568 Atomic orbital electron populations 1.21769 0.93826 1.03217 1.02096 1.22641 0.95894 0.82854 1.01101 1.88018 1.21770 1.27938 1.95591 1.21954 0.81426 0.91191 1.02404 1.21309 1.07939 0.96226 0.92563 1.20142 0.83105 0.79324 0.83833 1.90683 1.24253 1.48258 1.82332 1.45785 1.23586 1.48295 1.17447 1.21633 0.95523 0.92918 0.85191 0.90833 1.21623 0.95610 0.97071 0.84961 1.44554 1.40963 1.48418 1.00648 1.19404 1.15215 1.19584 0.83479 0.90275 1.25646 0.99192 0.99370 1.00913 1.69977 1.29272 1.34755 1.25468 0.85071 0.77379 0.78009 0.78343 1.20867 1.21413 1.19804 1.22073 0.91959 0.89926 0.94022 1.23565 0.93047 0.88046 0.93116 0.88969 1.87845 1.22268 1.40499 1.80786 1.23011 0.79396 1.03774 1.00788 1.23027 1.00661 1.00633 0.93660 1.23328 0.88767 1.04154 0.99616 0.92128 0.94005 0.88749 0.93256 0.90961 0.92324 0.88776 0.74821 0.94544 0.97345 0.93920 0.89238 0.99431 0.94632 0.87800 0.91767 0.89932 0.85806 0.84032 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.99 0.74 -2.13 16 2 C 0.05 0.98 6.66 71.99 0.48 1.46 16 3 O -0.41 -10.93 10.27 -148.98 -1.53 -12.46 16 4 C 0.11 2.08 5.76 71.98 0.41 2.50 16 5 C -0.18 -3.92 2.12 -52.93 -0.11 -4.03 16 6 C 0.55 18.02 6.87 87.66 0.60 18.62 16 7 O -0.58 -25.32 16.87 -3.01 -0.05 -25.37 16 8 N -0.70 -21.46 5.12 -436.91 -2.24 -23.70 16 9 C 0.15 6.12 2.94 46.18 0.14 6.25 16 10 H 0.07 3.33 7.77 -2.39 -0.02 3.31 16 11 C 0.13 6.31 6.99 86.73 0.61 6.92 16 12 N -0.62 -33.57 3.39 -692.00 -2.35 -35.92 16 13 C -0.25 -14.39 10.27 84.03 0.86 -13.52 16 14 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 15 C -0.06 -3.32 5.49 84.86 0.47 -2.86 16 16 N -0.95 -56.08 10.09 21.65 0.22 -55.86 16 17 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 C 0.15 7.47 5.62 86.86 0.49 7.96 16 22 C 0.08 3.16 3.15 31.99 0.10 3.26 16 23 H 0.09 3.11 7.69 -2.39 -0.02 3.09 16 24 O -0.40 -14.11 10.51 -148.98 -1.57 -15.68 16 25 C 0.03 0.67 10.85 113.37 1.23 1.90 16 26 C -0.14 -2.64 9.95 30.59 0.30 -2.34 16 27 C -0.12 -1.60 9.92 30.59 0.30 -1.30 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 35 H 0.41 9.60 8.52 -92.71 -0.79 8.81 16 36 H 0.04 1.65 8.03 -2.39 -0.02 1.63 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.09 4.99 5.87 -2.38 -0.01 4.98 16 40 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 44 H 0.08 1.85 8.14 -2.38 -0.02 1.84 16 45 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -78.82 388.22 1.29 -77.53 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.16 Total: 20.92 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 6.62 Total: 22.68 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -4.37 Total: -115.47 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -3.15 Total: -53.50 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -78.82 1.29 -77.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212484907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.794 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds