Wall clock time and date at job start Fri Apr 10 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99570 * 2 1 4 4 C 1.53001 * 109.46928 * 177.22439 * 3 2 1 5 5 C 1.50704 * 110.45865 * 51.71434 * 4 3 2 6 6 O 1.21281 * 119.99746 * 244.39081 * 5 4 3 7 7 N 1.34777 * 119.99816 * 64.38883 * 5 4 3 8 8 C 1.47426 * 125.64593 * 184.68416 * 7 5 4 9 9 C 1.54902 * 104.83271 * 204.09128 * 8 7 5 10 10 H 1.08999 * 111.00341 * 81.06400 * 9 8 7 11 11 C 1.53002 * 111.00400 * 204.87742 * 9 8 7 12 12 C 1.55158 * 101.58091 * 322.98973 * 9 8 7 13 13 H 1.08997 * 110.71911 * 276.96106 * 12 9 8 14 14 N 1.46503 * 110.71734 * 153.86690 * 12 9 8 15 15 C 1.36943 * 119.99797 * 155.00290 * 14 12 9 16 16 H 1.07998 * 119.99751 * 359.97438 * 15 14 12 17 17 C 1.38808 * 119.99958 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99876 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00180 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46978 * 90.00096 * 19 17 15 21 21 H 1.48499 * 109.47484 * 210.00046 * 19 17 15 22 22 H 1.48504 * 109.47144 * 330.00491 * 19 17 15 23 23 C 1.47017 * 125.64958 * 4.37392 * 7 5 4 24 24 C 1.54516 * 110.50911 * 174.31609 * 4 3 2 25 25 C 1.54483 * 104.05969 * 118.78242 * 24 4 3 26 26 O 1.44431 * 104.80398 * 336.01824 * 25 24 4 27 27 C 1.44427 * 105.26970 * 40.51492 * 26 25 24 28 28 H 1.09000 * 109.47638 * 299.99888 * 1 2 3 29 29 H 1.08997 * 109.47285 * 60.00334 * 1 2 3 30 30 H 1.09004 * 109.46614 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47235 * 57.21887 * 3 2 1 32 32 H 1.09007 * 109.47089 * 297.22331 * 3 2 1 33 33 H 1.09002 * 110.36433 * 322.93375 * 8 7 5 34 34 H 1.08996 * 110.36905 * 85.24861 * 8 7 5 35 35 H 1.08994 * 109.47043 * 58.54896 * 11 9 8 36 36 H 1.09007 * 109.46952 * 178.54851 * 11 9 8 37 37 H 1.09002 * 109.46917 * 298.54288 * 11 9 8 38 38 H 0.96997 * 120.00216 * 334.99266 * 14 12 9 39 39 H 0.97004 * 119.99956 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.88461 * 298.39105 * 23 7 5 41 41 H 1.08993 * 109.88352 * 59.56363 * 23 7 5 42 42 H 1.09001 * 110.50909 * 237.42389 * 24 4 3 43 43 H 1.09000 * 110.51167 * 0.14038 * 24 4 3 44 44 H 1.08999 * 110.37232 * 94.84788 * 25 24 4 45 45 H 1.08996 * 110.36810 * 217.18842 * 25 24 4 46 46 H 1.09008 * 110.36847 * 200.65201 * 27 26 25 47 47 H 1.08995 * 110.46770 * 78.36891 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5338 1.1855 0.0699 5 6 4.0381 0.2503 -0.9990 6 8 4.5820 -0.7883 -0.6886 7 7 3.8846 0.5683 -2.2997 8 6 4.2400 -0.2927 -3.4424 9 6 4.4692 0.6864 -4.6205 10 1 5.4652 1.1268 -4.5745 11 6 4.2421 -0.0094 -5.9641 12 6 3.3759 1.7548 -4.3548 13 1 2.4148 1.4306 -4.7538 14 7 3.7635 3.0465 -4.9272 15 6 2.8023 3.9599 -5.2695 16 1 1.7585 3.7277 -5.1179 17 6 3.1695 5.1839 -5.8113 18 7 2.2456 6.0615 -6.1408 19 14 4.9750 5.5857 -6.0728 20 1 5.3895 5.1421 -7.4281 21 1 5.1793 7.0512 -5.9477 22 1 5.7916 4.8830 -5.0507 23 6 3.3291 1.8286 -2.8139 24 6 4.1935 2.5756 -0.0718 25 6 4.9581 2.7653 1.2570 26 8 4.2781 1.9081 2.1997 27 6 3.9780 0.7000 1.4674 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6496 1.8637 0.8640 32 1 1.7284 1.8287 -0.9139 33 1 5.1525 -0.8493 -3.2285 34 1 3.4226 -0.9765 -3.6709 35 1 3.2265 -0.4033 -6.0021 36 1 4.3844 0.7072 -6.7731 37 1 4.9536 -0.8278 -6.0743 38 1 4.7010 3.2549 -5.0635 39 1 2.5023 6.9171 -6.5191 40 1 2.2988 1.9441 -2.4776 41 1 3.9310 2.6681 -2.4664 42 1 4.8843 2.5863 -0.9149 43 1 3.4340 3.3485 -0.1892 44 1 5.9973 2.4563 1.1443 45 1 4.9033 3.8045 1.5811 46 1 3.1703 0.1525 1.9534 47 1 4.8657 0.0727 1.3868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215242331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:03 Heat of formation + Delta-G solvation = -101.336762 kcal Electronic energy + Delta-G solvation = -28253.494590 eV Core-core repulsion = 24437.213277 eV Total energy + Delta-G solvation = -3816.281312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94327 -38.96316 -37.66616 -37.45653 -34.31290 -33.49798 -32.14484 -31.09261 -29.78595 -28.01776 -27.16989 -26.54440 -25.30330 -24.04257 -22.75605 -22.35744 -20.84451 -20.24932 -19.01605 -17.65124 -17.03135 -16.64827 -16.51775 -16.11681 -15.83512 -15.59983 -15.30328 -14.81062 -14.58988 -14.25287 -13.90747 -13.52169 -13.38695 -13.19951 -13.07305 -12.74437 -12.64322 -12.51888 -12.23918 -11.93687 -11.78718 -11.60845 -11.50192 -11.46377 -11.31368 -11.15149 -10.97433 -10.81628 -10.68604 -10.43870 -10.12691 -9.91463 -9.79786 -9.73031 -9.53374 -9.08997 -8.40533 -7.48052 -5.92279 -3.30513 2.71902 3.05756 3.26042 3.29418 3.35963 3.51817 3.80508 4.34976 4.44809 4.49807 4.57181 4.73660 4.93911 4.95423 4.99711 5.01866 5.05554 5.19201 5.22583 5.29928 5.38948 5.42420 5.45697 5.55093 5.56633 5.59938 5.64688 5.67003 5.71355 5.75754 5.77293 5.83782 5.84640 6.03085 6.08154 6.24482 6.30243 6.42077 6.45399 6.63130 6.67676 6.97025 7.68909 7.81789 8.26148 8.27294 9.02600 9.74952 9.93117 11.25240 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.004631 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.040604 B = 6044.458698 C = 6536.062426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.073 3.927 4 C -0.105 4.105 5 C 0.554 3.446 6 O -0.545 6.545 7 N -0.610 5.610 8 C 0.115 3.885 9 C -0.118 4.118 10 H 0.080 0.920 11 C -0.134 4.134 12 C 0.183 3.817 13 H 0.077 0.923 14 N -0.735 5.735 15 C -0.254 4.254 16 H 0.092 0.908 17 C 0.012 3.988 18 N -0.928 5.928 19 Si 0.882 3.118 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.065 3.935 24 C -0.146 4.146 25 C 0.046 3.954 26 O -0.374 6.374 27 C 0.069 3.931 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.364 0.636 39 H 0.261 0.739 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -10.188 10.911 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.004 4.004 4 C -0.109 4.109 5 C 0.342 3.658 6 O -0.423 6.423 7 N -0.343 5.343 8 C -0.008 4.008 9 C -0.138 4.138 10 H 0.099 0.901 11 C -0.191 4.191 12 C 0.071 3.929 13 H 0.095 0.905 14 N -0.376 5.376 15 C -0.383 4.383 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.575 5.575 19 Si 0.712 3.288 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.060 4.060 24 C -0.184 4.184 25 C -0.031 4.031 26 O -0.293 6.293 27 C -0.008 4.008 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.197 0.803 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.115 0.885 46 H 0.119 0.881 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.616 -10.713 11.302 15.656 hybrid contribution 0.949 0.789 -0.521 1.340 sum 2.565 -9.923 10.781 14.876 Atomic orbital electron populations 1.22747 0.80641 1.02812 1.00203 1.87916 1.19961 1.27169 1.95450 1.22637 0.90268 0.85537 1.01931 1.22092 0.95899 0.96309 0.96553 1.19517 0.78343 0.86132 0.81813 1.90650 1.44101 1.26087 1.81461 1.48378 1.62298 1.19048 1.04549 1.22240 1.00606 0.93201 0.84718 1.22688 1.00538 0.96332 0.94251 0.90133 1.21609 1.01382 0.99968 0.96176 1.21222 0.96638 0.85963 0.89104 0.90519 1.42710 1.05547 1.14448 1.74901 1.19053 0.89644 0.94384 1.35256 0.89035 1.24665 0.96840 0.96455 1.00531 1.69694 1.31491 1.08210 1.48055 0.86604 0.86341 0.77613 0.78222 1.20912 1.21634 1.20320 1.23504 0.98313 0.85205 0.98987 1.23159 1.00888 0.94682 0.99682 1.23441 0.95924 0.95995 0.87718 1.89123 1.77503 1.27900 1.34742 1.23343 1.01789 0.87547 0.88143 0.93994 0.93732 0.89589 0.91707 0.91436 0.90845 0.91445 0.92468 0.91538 0.93048 0.80264 0.92859 0.91780 0.90526 0.89044 0.88934 0.91998 0.88456 0.88114 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.24 9.89 -35.23 -0.35 -5.59 16 3 C 0.07 0.92 4.41 37.16 0.16 1.08 16 4 C -0.10 -1.42 0.51 -154.09 -0.08 -1.49 16 5 C 0.55 8.84 5.92 -10.98 -0.07 8.78 16 6 O -0.55 -10.18 15.76 5.56 0.09 -10.09 16 7 N -0.61 -9.24 3.28 -170.53 -0.56 -9.80 16 8 C 0.12 1.62 6.40 -2.53 -0.02 1.61 16 9 C -0.12 -1.68 3.27 -88.47 -0.29 -1.97 16 10 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 11 C -0.13 -1.70 9.30 37.16 0.35 -1.36 16 12 C 0.18 3.09 3.08 -66.09 -0.20 2.89 16 13 H 0.08 1.35 7.96 -51.93 -0.41 0.93 16 14 N -0.73 -15.37 4.96 -51.64 -0.26 -15.62 16 15 C -0.25 -6.47 10.44 -15.06 -0.16 -6.63 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 18 N -0.93 -27.38 13.97 55.49 0.78 -26.61 16 19 Si 0.88 20.60 27.73 -169.99 -4.71 15.89 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.04 6.52 56.52 0.37 -5.68 16 23 C 0.07 1.02 5.30 -3.06 -0.02 1.00 16 24 C -0.15 -1.76 4.85 -25.16 -0.12 -1.88 16 25 C 0.05 0.52 7.63 37.94 0.29 0.81 16 26 O -0.37 -4.96 11.65 -35.23 -0.41 -5.37 16 27 C 0.07 0.92 6.44 37.93 0.24 1.17 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.07 0.86 5.37 -51.92 -0.28 0.58 16 33 H 0.07 1.04 7.99 -51.93 -0.42 0.62 16 34 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 35 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.36 7.60 5.62 -40.82 -0.23 7.37 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 0.98 5.70 -51.93 -0.30 0.69 16 41 H 0.08 1.23 5.74 -51.93 -0.30 0.93 16 42 H 0.09 1.17 6.12 -51.93 -0.32 0.85 16 43 H 0.09 1.04 7.73 -51.93 -0.40 0.64 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.10 1.31 7.70 -51.92 -0.40 0.91 16 47 H 0.08 1.14 7.01 -51.93 -0.36 0.78 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -31.10 364.63 -6.46 -37.56 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.64 Total: 8.48 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 1.11 Total: 5.65 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.04 Total: -52.03 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.67 Total: -21.05 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.71 Total: 15.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.10 -6.46 -37.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215242331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.775 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds