Wall clock time and date at job start Fri Apr 10 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47370 * 2 1 4 4 C 1.42902 * 113.99976 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.47033 * 180.02562 * 4 3 2 6 6 N 1.46893 * 109.47135 * 64.99667 * 5 4 3 7 7 C 1.48054 * 111.00150 * 170.00056 * 6 5 4 8 8 C 1.53398 * 86.02491 * 222.77488 * 7 6 5 9 9 C 1.48062 * 110.99861 * 70.54686 * 6 5 4 10 10 C 1.52563 * 113.80509 * 268.71612 * 8 7 6 11 11 N 1.46271 * 109.56650 * 273.97854 * 10 8 7 12 12 C 1.46503 * 118.71402 * 163.92105 * 11 10 8 13 13 C 1.52998 * 109.47013 * 90.00177 * 12 11 10 14 14 C 1.50699 * 109.47172 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99774 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00172 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00412 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00098 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47078 * 89.99824 * 18 16 14 20 20 H 1.48499 * 109.47086 * 210.00036 * 18 16 14 21 21 H 1.48497 * 109.46735 * 330.00014 * 18 16 14 22 22 C 1.33712 * 122.56694 * 343.92231 * 11 10 8 23 23 O 1.21282 * 118.37931 * 183.25932 * 22 11 10 24 24 C 1.50163 * 123.24130 * 3.23823 * 22 11 10 25 25 O 1.42681 * 113.76711 * 138.11412 * 8 7 6 26 26 H 1.09000 * 109.46781 * 59.99867 * 1 2 3 27 27 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46775 * 300.00262 * 1 2 3 29 29 H 1.09002 * 109.47149 * 239.99851 * 2 1 3 30 30 H 1.09000 * 109.47290 * 120.00269 * 2 1 3 31 31 H 1.08999 * 109.47070 * 60.00482 * 4 3 2 32 32 H 1.08999 * 109.47258 * 299.99589 * 4 3 2 33 33 H 1.09007 * 109.46813 * 304.99723 * 5 4 3 34 34 H 1.08997 * 109.46838 * 185.00139 * 5 4 3 35 35 H 1.08993 * 113.78984 * 108.49572 * 7 6 5 36 36 H 1.09002 * 113.78491 * 337.05011 * 7 6 5 37 37 H 1.09001 * 113.78482 * 22.95195 * 9 6 5 38 38 H 1.09007 * 113.78819 * 251.50526 * 9 6 5 39 39 H 1.08997 * 109.45597 * 34.01159 * 10 8 7 40 40 H 1.09004 * 109.44959 * 153.94964 * 10 8 7 41 41 H 1.08996 * 109.46694 * 210.00179 * 12 11 10 42 42 H 1.09000 * 109.47017 * 330.00267 * 12 11 10 43 43 H 1.09004 * 109.47037 * 300.00074 * 13 12 11 44 44 H 1.08996 * 109.47281 * 59.99695 * 13 12 11 45 45 H 0.96995 * 120.00465 * 179.97438 * 17 16 14 46 46 H 1.09000 * 109.35284 * 222.12682 * 24 22 11 47 47 H 1.08998 * 109.35259 * 102.56378 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 3.3868 3.5616 1.2558 7 6 3.9546 4.9213 1.4000 8 6 4.2170 4.5409 2.8627 9 6 4.1954 3.0791 2.3985 10 6 3.0760 4.9046 3.8078 11 7 3.2328 6.2884 4.2552 12 6 2.0874 6.9630 4.8712 13 6 2.1112 6.7304 6.3832 14 6 0.9327 7.4238 7.0167 15 1 0.2366 7.9755 6.4024 16 6 0.7438 7.3547 8.3807 17 7 -0.2844 7.9602 8.9337 18 14 1.9482 6.4010 9.4434 19 1 3.0379 7.3056 9.8903 20 1 1.2389 5.8569 10.6291 21 1 2.5253 5.2824 8.6554 22 6 4.3805 6.9616 4.1240 23 8 4.4445 8.0855 4.5754 24 6 5.5944 6.3948 3.4456 25 8 5.4871 4.9715 3.3498 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8333 0.9766 -0.8908 32 1 3.8341 0.9764 0.8892 33 1 3.3493 3.4418 -0.8413 34 1 4.9083 3.0254 -0.0899 35 1 3.2219 5.7190 1.2779 36 1 4.8621 5.0828 0.8181 37 1 5.1743 2.6940 2.1128 38 1 3.6538 2.4127 3.0700 39 1 2.1247 4.7970 3.2868 40 1 3.0940 4.2396 4.6713 41 1 2.1428 8.0322 4.6670 42 1 1.1630 6.5612 4.4563 43 1 2.0559 5.6611 6.5872 44 1 3.0357 7.1321 6.7980 45 1 -0.4175 7.9113 9.8932 46 1 6.4833 6.6519 4.0217 47 1 5.6800 6.8186 2.4451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273953856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:14 Heat of formation + Delta-G solvation = -78.037966 kcal Electronic energy + Delta-G solvation = -26895.201947 eV Core-core repulsion = 23079.930947 eV Total energy + Delta-G solvation = -3815.271001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45838 -39.46347 -38.19336 -36.81690 -35.51087 -33.05440 -32.58815 -30.88749 -30.34778 -28.56645 -27.25249 -26.52137 -25.02293 -24.59481 -23.04956 -22.16540 -21.13244 -20.05489 -18.24588 -17.85911 -17.18356 -17.08666 -16.70096 -16.13312 -15.90183 -15.73772 -15.41582 -15.09953 -14.49562 -14.39341 -14.01487 -13.76539 -13.61604 -13.45212 -13.26155 -13.11319 -12.84229 -12.63702 -12.56123 -12.36817 -12.13279 -11.75342 -11.62950 -11.52718 -11.42025 -11.21252 -11.01066 -10.87125 -10.46158 -10.20285 -10.00184 -9.86594 -9.80586 -9.33320 -9.20527 -9.07993 -8.51131 -8.24857 -6.02354 -4.00699 2.79121 3.00490 3.32297 3.34875 3.41069 3.41226 3.45322 3.57516 4.06885 4.24571 4.48294 4.51169 4.55500 4.71552 4.76709 4.83568 4.87778 4.97441 5.02995 5.06492 5.09029 5.09286 5.20466 5.30877 5.32447 5.41302 5.44148 5.47590 5.51102 5.60502 5.64569 5.75468 5.87311 5.91057 6.01135 6.36160 6.54225 6.57050 6.67378 6.76727 6.96143 7.27048 7.37349 7.74393 7.81643 8.39410 8.53110 9.00931 9.59903 11.10850 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.003402 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.622239 B = 8227.279014 C = 9616.523816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.372 6.372 4 C 0.068 3.932 5 C 0.024 3.976 6 N -0.458 5.458 7 C -0.020 4.020 8 C 0.069 3.931 9 C 0.024 3.976 10 C 0.116 3.884 11 N -0.599 5.599 12 C 0.123 3.877 13 C -0.022 4.022 14 C -0.518 4.518 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.902 5.902 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.267 1.267 22 C 0.478 3.522 23 O -0.538 6.538 24 C 0.052 3.948 25 O -0.359 6.359 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.015 0.985 44 H 0.017 0.983 45 H 0.263 0.737 46 H 0.127 0.873 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 -16.892 -21.581 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.291 6.291 4 C -0.009 4.009 5 C -0.105 4.105 6 N -0.182 5.182 7 C -0.148 4.148 8 C 0.028 3.972 9 C -0.104 4.104 10 C -0.008 4.008 11 N -0.332 5.332 12 C 0.002 3.998 13 C -0.060 4.060 14 C -0.557 4.557 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.192 1.192 22 C 0.265 3.735 23 O -0.416 6.416 24 C -0.027 4.027 25 O -0.277 6.277 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.033 0.967 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.145 0.855 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.713 -16.344 -21.152 28.441 hybrid contribution 1.489 -0.568 0.512 1.674 sum 11.202 -16.912 -20.640 28.940 Atomic orbital electron populations 1.21729 0.93624 1.02081 1.03426 1.22445 0.95835 0.84081 0.99637 1.88020 1.20121 1.25736 1.95256 1.22432 0.82503 0.95976 1.00015 1.22685 0.98418 0.94618 0.94761 1.68665 1.44964 1.02346 1.02182 1.24591 1.00065 0.94443 0.95742 1.23354 0.84914 0.96523 0.92411 1.24048 0.98010 0.94394 0.93991 1.21682 0.98186 0.83366 0.97553 1.47743 1.12927 1.13007 1.59492 1.21747 0.84983 0.97742 0.95303 1.19834 0.97958 0.96835 0.91350 1.20963 1.09122 1.32674 0.92899 0.90821 1.24966 0.95180 0.95119 0.97935 1.69905 1.29051 1.43790 1.11347 0.86766 0.81505 0.80931 0.79991 1.20253 1.21361 1.19193 1.20667 0.85068 0.86773 0.81030 1.90772 1.83129 1.19460 1.48220 1.22753 0.97635 0.80859 1.01425 1.88090 1.32424 1.20826 1.86374 0.91940 0.91309 0.91474 0.93887 0.93564 0.93065 0.93244 0.89304 0.92385 0.88306 0.90130 0.89779 0.87814 0.88302 0.90347 0.90086 0.90940 0.96685 0.96457 0.92699 0.85501 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.37 -3.69 10.29 -35.23 -0.36 -4.06 16 4 C 0.07 0.51 6.09 37.16 0.23 0.73 16 5 C 0.02 0.18 5.20 -3.82 -0.02 0.16 16 6 N -0.46 -4.39 6.10 -240.94 -1.47 -5.86 16 7 C -0.02 -0.19 6.67 -2.99 -0.02 -0.21 16 8 C 0.07 0.78 1.21 -90.51 -0.11 0.67 16 9 C 0.02 0.22 6.44 -2.99 -0.02 0.20 16 10 C 0.12 1.61 5.79 -4.39 -0.03 1.58 16 11 N -0.60 -10.50 2.83 -174.67 -0.50 -11.00 16 12 C 0.12 2.57 5.20 -4.04 -0.02 2.55 16 13 C -0.02 -0.54 4.36 -27.88 -0.12 -0.66 16 14 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 15 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -28.38 13.96 55.43 0.77 -27.60 16 18 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 22 C 0.48 8.46 7.57 -11.72 -0.09 8.37 16 23 O -0.54 -11.82 16.33 5.56 0.09 -11.73 16 24 C 0.05 0.67 6.67 35.75 0.24 0.91 16 25 O -0.36 -4.46 10.66 -35.23 -0.38 -4.84 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.34 7.41 -51.93 -0.38 -0.04 16 33 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.06 0.35 7.70 -51.93 -0.40 -0.05 16 35 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.08 0.66 7.79 -51.93 -0.40 0.26 16 37 H 0.08 0.65 7.78 -51.93 -0.40 0.25 16 38 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.10 1.31 7.88 -51.93 -0.41 0.90 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.83 7.29 -51.93 -0.38 1.45 16 42 H 0.07 1.40 7.96 -51.93 -0.41 0.99 16 43 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 44 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -35.28 377.94 -8.78 -44.06 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -8.20 Total: -3.40 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 0.24 Total: 0.73 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -1.19 Total: -44.46 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.65 Total: -20.62 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.28 -8.78 -44.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273953856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.980 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds