Wall clock time and date at job start Fri Apr 10 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47370 * 2 1 4 4 C 1.42902 * 113.99976 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.47033 * 180.02562 * 4 3 2 6 6 N 1.46893 * 109.47135 * 64.99667 * 5 4 3 7 7 C 1.48054 * 111.00150 * 170.00056 * 6 5 4 8 8 C 1.53398 * 86.02491 * 222.77488 * 7 6 5 9 9 C 1.48062 * 110.99861 * 70.54686 * 6 5 4 10 10 C 1.52563 * 113.80509 * 268.71612 * 8 7 6 11 11 N 1.46271 * 109.56650 * 273.97854 * 10 8 7 12 12 C 1.46503 * 118.71402 * 163.92105 * 11 10 8 13 13 C 1.52998 * 109.47013 * 90.00177 * 12 11 10 14 14 C 1.50699 * 109.47172 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99774 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00172 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00412 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00098 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47078 * 89.99824 * 18 16 14 20 20 H 1.48499 * 109.47086 * 210.00036 * 18 16 14 21 21 H 1.48497 * 109.46735 * 330.00014 * 18 16 14 22 22 C 1.33712 * 122.56694 * 343.92231 * 11 10 8 23 23 O 1.21282 * 118.37931 * 183.25932 * 22 11 10 24 24 C 1.50163 * 123.24130 * 3.23823 * 22 11 10 25 25 O 1.42681 * 113.76711 * 138.11412 * 8 7 6 26 26 H 1.09000 * 109.46781 * 59.99867 * 1 2 3 27 27 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46775 * 300.00262 * 1 2 3 29 29 H 1.09002 * 109.47149 * 239.99851 * 2 1 3 30 30 H 1.09000 * 109.47290 * 120.00269 * 2 1 3 31 31 H 1.08999 * 109.47070 * 60.00482 * 4 3 2 32 32 H 1.08999 * 109.47258 * 299.99589 * 4 3 2 33 33 H 1.09007 * 109.46813 * 304.99723 * 5 4 3 34 34 H 1.08997 * 109.46838 * 185.00139 * 5 4 3 35 35 H 1.08993 * 113.78984 * 108.49572 * 7 6 5 36 36 H 1.09002 * 113.78491 * 337.05011 * 7 6 5 37 37 H 1.09001 * 113.78482 * 22.95195 * 9 6 5 38 38 H 1.09007 * 113.78819 * 251.50526 * 9 6 5 39 39 H 1.08997 * 109.45597 * 34.01159 * 10 8 7 40 40 H 1.09004 * 109.44959 * 153.94964 * 10 8 7 41 41 H 1.08996 * 109.46694 * 210.00179 * 12 11 10 42 42 H 1.09000 * 109.47017 * 330.00267 * 12 11 10 43 43 H 1.09004 * 109.47037 * 300.00074 * 13 12 11 44 44 H 1.08996 * 109.47281 * 59.99695 * 13 12 11 45 45 H 0.96995 * 120.00465 * 179.97438 * 17 16 14 46 46 H 1.09000 * 109.35284 * 222.12682 * 24 22 11 47 47 H 1.08998 * 109.35259 * 102.56378 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 3.3868 3.5616 1.2558 7 6 3.9546 4.9213 1.4000 8 6 4.2170 4.5409 2.8627 9 6 4.1954 3.0791 2.3985 10 6 3.0760 4.9046 3.8078 11 7 3.2328 6.2884 4.2552 12 6 2.0874 6.9630 4.8712 13 6 2.1112 6.7304 6.3832 14 6 0.9327 7.4238 7.0167 15 1 0.2366 7.9755 6.4024 16 6 0.7438 7.3547 8.3807 17 7 -0.2844 7.9602 8.9337 18 14 1.9482 6.4010 9.4434 19 1 3.0379 7.3056 9.8903 20 1 1.2389 5.8569 10.6291 21 1 2.5253 5.2824 8.6554 22 6 4.3805 6.9616 4.1240 23 8 4.4445 8.0855 4.5754 24 6 5.5944 6.3948 3.4456 25 8 5.4871 4.9715 3.3498 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8333 0.9766 -0.8908 32 1 3.8341 0.9764 0.8892 33 1 3.3493 3.4418 -0.8413 34 1 4.9083 3.0254 -0.0899 35 1 3.2219 5.7190 1.2779 36 1 4.8621 5.0828 0.8181 37 1 5.1743 2.6940 2.1128 38 1 3.6538 2.4127 3.0700 39 1 2.1247 4.7970 3.2868 40 1 3.0940 4.2396 4.6713 41 1 2.1428 8.0322 4.6670 42 1 1.1630 6.5612 4.4563 43 1 2.0559 5.6611 6.5872 44 1 3.0357 7.1321 6.7980 45 1 -0.4175 7.9113 9.8932 46 1 6.4833 6.6519 4.0217 47 1 5.6800 6.8186 2.4451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273953856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:14 Heat of formation + Delta-G solvation = -105.882483 kcal Electronic energy + Delta-G solvation = -26896.409376 eV Core-core repulsion = 23079.930947 eV Total energy + Delta-G solvation = -3816.478430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.42303 -40.62334 -38.88559 -37.76195 -37.04738 -35.10116 -33.34890 -32.46441 -31.37068 -29.50693 -28.60672 -27.26178 -26.32123 -25.86319 -23.60152 -23.33726 -22.48979 -21.24647 -19.38021 -19.11109 -18.90671 -17.81565 -17.68002 -17.26169 -17.01619 -16.64970 -16.38961 -16.23940 -15.94506 -15.45695 -15.24335 -15.00084 -14.80893 -14.68012 -14.32088 -14.27392 -14.07239 -13.87604 -13.54966 -13.33207 -13.14327 -12.97598 -12.94767 -12.49309 -12.40445 -12.28266 -12.13905 -12.00091 -11.87959 -11.74023 -11.61108 -11.56004 -11.23990 -10.82735 -10.47754 -10.41946 -9.85705 -9.75366 -8.34971 -6.39571 1.29796 1.31542 1.42750 1.44378 1.78240 2.30546 2.41014 2.79701 2.88649 2.99792 3.20406 3.25796 3.60533 3.86248 3.94897 4.12874 4.19560 4.22975 4.26392 4.30901 4.36606 4.41520 4.45997 4.48812 4.50839 4.54434 4.56148 4.58545 4.63118 4.74000 4.78648 4.81676 4.92221 4.93249 5.02446 5.08638 5.28291 5.28501 5.31783 5.39246 5.59299 5.76337 5.93369 6.18964 6.38789 6.42601 6.66158 7.01323 7.25036 8.81485 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.003402 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.622239 B = 8227.279014 C = 9616.523816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.402 6.402 4 C 0.064 3.936 5 C 0.024 3.976 6 N -0.476 5.476 7 C -0.011 4.011 8 C 0.063 3.937 9 C 0.036 3.964 10 C 0.112 3.888 11 N -0.600 5.600 12 C 0.134 3.866 13 C -0.010 4.010 14 C -0.532 4.532 15 H 0.039 0.961 16 C 0.011 3.989 17 N -0.945 5.945 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.274 1.274 21 H -0.251 1.251 22 C 0.470 3.530 23 O -0.590 6.590 24 C 0.064 3.936 25 O -0.358 6.358 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.024 0.976 44 H -0.001 1.001 45 H 0.269 0.731 46 H 0.142 0.858 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.825 -19.545 -22.892 32.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.322 6.322 4 C -0.012 4.012 5 C -0.104 4.104 6 N -0.200 5.200 7 C -0.140 4.140 8 C 0.022 3.978 9 C -0.093 4.093 10 C -0.010 4.010 11 N -0.331 5.331 12 C 0.011 3.989 13 C -0.048 4.048 14 C -0.570 4.570 15 H 0.058 0.942 16 C -0.187 4.187 17 N -0.585 5.585 18 Si 0.772 3.228 19 H -0.201 1.201 20 H -0.199 1.199 21 H -0.174 1.174 22 C 0.259 3.741 23 O -0.472 6.472 24 C -0.015 4.015 25 O -0.276 6.276 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.042 0.958 44 H 0.017 0.983 45 H 0.077 0.923 46 H 0.159 0.841 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.087 -19.043 -22.499 31.858 hybrid contribution 0.660 0.285 0.860 1.122 sum 12.747 -18.758 -21.639 31.346 Atomic orbital electron populations 1.21752 0.93814 1.02958 1.02347 1.22561 0.95786 0.83467 1.00554 1.87984 1.21657 1.27039 1.95473 1.22574 0.81474 0.96064 1.01121 1.22748 0.99672 0.94490 0.93506 1.68668 1.45674 1.02390 1.03280 1.24549 1.00577 0.94343 0.94499 1.23433 0.83400 0.98452 0.92465 1.24069 0.98986 0.92701 0.93515 1.21890 1.00041 0.80916 0.98186 1.47760 1.12031 1.14382 1.58923 1.21318 0.87271 0.97081 0.93187 1.19665 0.95034 0.96378 0.93772 1.21267 1.09903 1.32654 0.93177 0.94228 1.25908 0.97087 0.96224 0.99475 1.70037 1.31019 1.45377 1.12064 0.85695 0.78926 0.79814 0.78395 1.20096 1.19913 1.17430 1.21718 0.86071 0.86144 0.80199 1.90747 1.84084 1.21827 1.50493 1.22766 0.95008 0.81118 1.02573 1.88107 1.32685 1.20263 1.86532 0.92473 0.89506 0.93031 0.92428 0.93072 0.91284 0.92703 0.89871 0.90141 0.89605 0.87967 0.87703 0.87761 0.87869 0.90709 0.92458 0.89603 0.95764 0.98257 0.92253 0.84056 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.05 0.71 6.66 71.98 0.48 1.18 16 3 O -0.40 -7.29 10.29 -148.98 -1.53 -8.83 16 4 C 0.06 0.78 6.09 71.99 0.44 1.22 16 5 C 0.02 0.29 5.20 86.31 0.45 0.74 16 6 N -0.48 -7.85 6.10 -920.47 -5.62 -13.47 16 7 C -0.01 -0.18 6.67 86.21 0.58 0.39 16 8 C 0.06 1.26 1.21 -10.65 -0.01 1.24 16 9 C 0.04 0.54 6.44 86.20 0.56 1.09 16 10 C 0.11 2.96 5.79 86.28 0.50 3.45 16 11 N -0.60 -20.77 2.83 -825.53 -2.34 -23.11 16 12 C 0.13 5.73 5.20 86.38 0.45 6.17 16 13 C -0.01 -0.52 4.36 29.85 0.13 -0.39 16 14 C -0.53 -32.14 9.66 25.60 0.25 -31.90 16 15 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 16 C 0.01 0.65 5.47 84.65 0.46 1.11 16 17 N -0.94 -60.79 13.96 21.45 0.30 -60.49 16 18 Si 0.95 46.77 27.47 68.60 1.88 48.65 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 22 C 0.47 16.29 7.57 87.65 0.66 16.96 16 23 O -0.59 -26.31 16.33 -3.04 -0.05 -26.36 16 24 C 0.06 1.46 6.67 71.07 0.47 1.93 16 25 O -0.36 -7.70 10.66 -148.98 -1.59 -9.29 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.59 7.41 -2.39 -0.02 0.58 16 33 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.08 0.62 7.70 -2.39 -0.02 0.61 16 35 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 36 H 0.10 1.25 7.79 -2.39 -0.02 1.24 16 37 H 0.11 1.16 7.78 -2.39 -0.02 1.14 16 38 H 0.10 1.56 8.09 -2.38 -0.02 1.54 16 39 H 0.10 2.62 7.88 -2.39 -0.02 2.60 16 40 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.06 2.71 7.29 -2.39 -0.02 2.69 16 42 H 0.09 3.39 7.96 -2.39 -0.02 3.37 16 43 H 0.02 1.18 7.20 -2.38 -0.02 1.16 16 44 H 0.00 -0.05 7.57 -2.39 -0.02 -0.07 16 45 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 46 H 0.14 2.86 8.14 -2.39 -0.02 2.85 16 47 H 0.12 1.96 7.92 -2.39 -0.02 1.95 16 Total: -1.00 -78.56 377.94 -1.92 -80.47 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.87 Total: 10.47 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.15 Total: 1.94 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -7.66 Total: -97.07 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -3.17 Total: -44.47 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.88 Total: 48.65 kcal Total: -78.56 -1.92 -80.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273953856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.408 kcal (2) G-P(sol) polarization free energy of solvation -78.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds