Wall clock time and date at job start Fri Apr 10 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42908 * 109.46795 * 2 1 4 4 C 1.42901 * 113.99742 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46815 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47351 * 64.99857 * 5 4 3 7 7 C 1.46204 * 118.77476 * 89.99794 * 6 5 4 8 8 C 1.52437 * 109.92896 * 162.42111 * 7 6 5 9 9 C 1.54118 * 110.13256 * 169.32331 * 8 7 6 10 10 C 1.55042 * 102.81345 * 140.90756 * 9 8 7 11 11 N 1.48577 * 103.28619 * 322.99458 * 10 9 8 12 12 C 1.46907 * 110.99705 * 159.44617 * 11 10 9 13 13 C 1.50695 * 109.47119 * 52.58487 * 12 11 10 14 14 H 1.07995 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99572 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.48033 * 105.83687 * 38.92187 * 11 10 9 22 22 O 1.42574 * 110.10925 * 47.75912 * 8 7 6 23 23 C 1.43064 * 113.14033 * 293.21121 * 22 8 7 24 24 C 1.33849 * 118.77830 * 269.98280 * 6 5 4 25 25 O 1.21288 * 118.69198 * 2.39502 * 24 6 5 26 26 H 1.08997 * 109.47144 * 299.99833 * 1 2 3 27 27 H 1.08995 * 109.47204 * 60.00091 * 1 2 3 28 28 H 1.09003 * 109.46383 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47144 * 240.00167 * 2 1 3 30 30 H 1.08995 * 109.47204 * 119.99909 * 2 1 3 31 31 H 1.09001 * 109.47238 * 60.00368 * 4 3 2 32 32 H 1.09000 * 109.47178 * 299.99959 * 4 3 2 33 33 H 1.09007 * 109.46692 * 304.99919 * 5 4 3 34 34 H 1.08997 * 109.47125 * 184.99928 * 5 4 3 35 35 H 1.09001 * 109.39190 * 42.27992 * 7 6 5 36 36 H 1.09000 * 109.39393 * 282.56245 * 7 6 5 37 37 H 1.09001 * 110.74372 * 259.24236 * 9 8 7 38 38 H 1.08998 * 110.73797 * 22.57369 * 9 8 7 39 39 H 1.08998 * 110.65285 * 204.54549 * 10 9 8 40 40 H 1.08998 * 110.65679 * 81.44355 * 10 9 8 41 41 H 1.09002 * 109.46929 * 292.58437 * 12 11 10 42 42 H 1.08998 * 109.47035 * 172.59250 * 12 11 10 43 43 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 44 44 H 1.08999 * 109.97867 * 94.10935 * 21 11 10 45 45 H 1.08994 * 109.97679 * 215.35949 * 21 11 10 46 46 H 1.09003 * 109.41227 * 288.54656 * 23 22 8 47 47 H 1.08995 * 109.32503 * 168.76432 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 7 3.3877 3.5602 1.2524 7 6 4.2999 3.5590 2.3950 8 6 3.8546 4.5992 3.4165 9 6 4.6417 4.4238 4.7298 10 6 4.9003 5.8867 5.1736 11 7 5.1430 6.5950 3.8903 12 6 4.9288 8.0408 4.0384 13 6 5.7418 8.5528 5.1994 14 1 6.3565 7.8724 5.7699 15 6 5.7008 9.8899 5.5331 16 7 4.9519 10.7184 4.8387 17 14 6.7091 10.5248 6.9718 18 1 8.1490 10.2614 6.7216 19 1 6.2880 9.8315 8.2157 20 1 6.4925 11.9862 7.1215 21 6 4.1871 6.0136 2.9210 22 8 2.4560 4.4755 3.6641 23 6 1.6521 4.8146 2.5302 24 6 2.1679 4.1083 1.3080 25 8 1.4504 4.0323 0.3330 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8333 0.9769 -0.8908 32 1 3.8340 0.9766 0.8892 33 1 3.3490 3.4420 -0.8413 34 1 4.9080 3.0257 -0.0899 35 1 5.3078 3.7953 2.0537 36 1 4.2982 2.5725 2.8586 37 1 4.0426 3.8955 5.4715 38 1 5.5821 3.9030 4.5496 39 1 5.7787 5.9438 5.8165 40 1 4.0254 6.2956 5.6790 41 1 3.8719 8.2346 4.2214 42 1 5.2385 8.5494 3.1255 43 1 4.4285 10.3889 4.0914 44 1 3.2807 6.6178 2.8837 45 1 4.6429 5.9649 1.9321 46 1 1.6897 5.8919 2.3687 47 1 0.6215 4.5121 2.7153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:21 Heat of formation + Delta-G solvation = -108.799963 kcal Electronic energy + Delta-G solvation = -27577.410232 eV Core-core repulsion = 23760.805291 eV Total energy + Delta-G solvation = -3816.604941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.10691 -38.90174 -38.01647 -36.46515 -35.58634 -33.34120 -32.00243 -31.17179 -29.81577 -28.60345 -27.66314 -26.45738 -24.69577 -23.31695 -22.96460 -22.79112 -20.79458 -20.59714 -18.41848 -17.81412 -17.12122 -16.90138 -16.48043 -16.22023 -15.90398 -15.66066 -15.09814 -14.85388 -14.41746 -14.00745 -13.86745 -13.70480 -13.52103 -13.39637 -13.20871 -12.91028 -12.76165 -12.35561 -12.20207 -12.12343 -11.86576 -11.58704 -11.56995 -11.43139 -11.21746 -11.10885 -10.91313 -10.75424 -10.64385 -10.40914 -10.21772 -10.08872 -9.78619 -9.27794 -8.81556 -8.63734 -8.45946 -7.58386 -6.42460 -4.12555 2.58722 2.74058 3.41463 3.43565 3.48692 3.61150 3.62188 4.24975 4.45819 4.56532 4.66760 4.77142 4.79121 4.81142 4.92329 4.97243 5.00686 5.08159 5.10517 5.12485 5.17697 5.31159 5.34117 5.37127 5.45790 5.49303 5.61543 5.65059 5.70062 5.76354 5.86794 5.91864 5.99458 6.07117 6.28184 6.44182 6.52813 6.81221 6.94089 7.04089 7.05134 7.33108 7.51834 7.81386 8.10469 8.20211 8.47514 8.79575 9.58953 10.96963 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.032346 B = 0.002906 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.437375 B = 9631.972039 C = 9777.028079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.367 6.367 4 C 0.047 3.953 5 C 0.112 3.888 6 N -0.602 5.602 7 C 0.101 3.899 8 C 0.092 3.908 9 C -0.109 4.109 10 C 0.056 3.944 11 N -0.505 5.505 12 C 0.174 3.826 13 C -0.595 4.595 14 H 0.058 0.942 15 C 0.015 3.985 16 N -0.911 5.911 17 Si 1.072 2.928 18 H -0.287 1.287 19 H -0.287 1.287 20 H -0.283 1.283 21 C 0.011 3.989 22 O -0.358 6.358 23 C 0.046 3.954 24 C 0.495 3.505 25 O -0.526 6.526 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.046 0.954 41 H -0.016 1.016 42 H 0.022 0.978 43 H 0.267 0.733 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 -21.478 -7.255 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.286 6.286 4 C -0.031 4.031 5 C -0.011 4.011 6 N -0.336 5.336 7 C -0.022 4.022 8 C 0.052 3.948 9 C -0.148 4.148 10 C -0.072 4.072 11 N -0.230 5.230 12 C 0.048 3.952 13 C -0.634 4.634 14 H 0.077 0.923 15 C -0.189 4.189 16 N -0.547 5.547 17 Si 0.900 3.100 18 H -0.213 1.213 19 H -0.214 1.214 20 H -0.208 1.208 21 C -0.118 4.118 22 O -0.277 6.277 23 C -0.034 4.034 24 C 0.282 3.718 25 O -0.402 6.402 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.001 0.999 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.002 -20.077 -6.902 21.442 hybrid contribution -0.896 -1.432 -0.919 1.923 sum -3.898 -21.509 -7.821 23.217 Atomic orbital electron populations 1.21696 0.93774 1.01762 1.03356 1.22428 0.95796 0.84374 0.99439 1.88139 1.19952 1.25267 1.95210 1.22895 0.82752 0.97407 1.00081 1.21567 0.99793 0.91721 0.87970 1.47419 1.15704 1.57570 1.12935 1.22125 0.94035 0.99814 0.86207 1.22374 0.81876 0.94350 0.96245 1.22549 0.98760 0.99364 0.94099 1.23017 1.01034 0.89938 0.93203 1.64909 1.45648 1.06661 1.05784 1.20015 0.94818 0.82583 0.97783 1.21974 1.29840 0.96279 1.15283 0.92349 1.25871 0.97716 0.93356 1.01921 1.70798 1.26639 1.37739 1.19538 0.83492 0.75528 0.76209 0.74756 1.21322 1.21399 1.20793 1.23492 0.96438 0.93356 0.98534 1.88130 1.16108 1.88618 1.34798 1.22817 0.96777 1.00305 0.83451 1.20831 0.81429 0.78911 0.90615 1.90736 1.54656 1.58169 1.36644 0.91899 0.91818 0.91421 0.93824 0.93917 0.92637 0.93412 0.88765 0.88824 0.89118 0.91060 0.89921 0.89479 0.89642 0.93559 0.99883 0.96001 0.92273 0.93390 0.90667 0.89173 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.37 -4.66 8.86 -49.31 -0.44 -5.09 16 4 C 0.05 0.46 6.28 37.16 0.23 0.69 16 5 C 0.11 1.18 5.80 -4.04 -0.02 1.16 16 6 N -0.60 -7.64 2.79 -174.70 -0.49 -8.13 16 7 C 0.10 1.17 5.03 -4.49 -0.02 1.15 16 8 C 0.09 1.32 0.96 -90.06 -0.09 1.23 16 9 C -0.11 -1.53 6.32 -25.07 -0.16 -1.68 16 10 C 0.06 1.04 5.55 -1.82 -0.01 1.03 16 11 N -0.51 -10.56 5.40 -231.98 -1.25 -11.81 16 12 C 0.17 4.46 4.10 -4.97 -0.02 4.44 16 13 C -0.60 -16.51 8.56 -34.44 -0.29 -16.81 16 14 H 0.06 1.59 6.53 -52.49 -0.34 1.24 16 15 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 16 N -0.91 -27.62 13.65 55.43 0.76 -26.86 16 17 Si 1.07 24.89 29.90 -169.99 -5.08 19.80 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.01 0.19 5.38 -2.93 -0.02 0.17 16 22 O -0.36 -5.43 10.34 -35.23 -0.36 -5.79 16 23 C 0.05 0.65 6.42 35.81 0.23 0.88 16 24 C 0.49 7.44 7.08 -11.60 -0.08 7.36 16 25 O -0.53 -9.31 15.31 -8.53 -0.13 -9.44 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.15 7.30 -51.92 -0.38 0.77 16 34 H 0.09 0.72 7.94 -51.93 -0.41 0.30 16 35 H 0.09 0.94 7.86 -51.93 -0.41 0.53 16 36 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 37 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 38 H 0.09 1.03 7.85 -51.93 -0.41 0.62 16 39 H 0.09 1.62 7.16 -51.93 -0.37 1.25 16 40 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 41 H -0.02 -0.45 7.68 -51.93 -0.40 -0.85 16 42 H 0.02 0.60 8.01 -51.93 -0.42 0.18 16 43 H 0.27 8.09 7.22 -40.82 -0.29 7.80 16 44 H 0.05 0.90 5.61 -51.93 -0.29 0.61 16 45 H 0.08 1.26 7.62 -51.93 -0.40 0.87 16 46 H 0.09 1.29 6.53 -51.93 -0.34 0.95 16 47 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -33.78 368.10 -9.06 -42.84 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.89 Total: -0.85 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.28 Total: -0.21 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.98 Total: -46.81 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.93 Total: -20.33 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.78 -9.06 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.959 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds