Wall clock time and date at job start Fri Apr 10 2020 18:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42908 * 109.46795 * 2 1 4 4 C 1.42901 * 113.99742 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46815 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47351 * 64.99857 * 5 4 3 7 7 C 1.46204 * 118.77476 * 89.99794 * 6 5 4 8 8 C 1.52437 * 109.92896 * 162.42111 * 7 6 5 9 9 C 1.54118 * 110.13256 * 169.32331 * 8 7 6 10 10 C 1.55042 * 102.81345 * 140.90756 * 9 8 7 11 11 N 1.48577 * 103.28619 * 322.99458 * 10 9 8 12 12 C 1.46907 * 110.99705 * 159.44617 * 11 10 9 13 13 C 1.50695 * 109.47119 * 52.58487 * 12 11 10 14 14 H 1.07995 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99572 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.48033 * 105.83687 * 38.92187 * 11 10 9 22 22 O 1.42574 * 110.10925 * 47.75912 * 8 7 6 23 23 C 1.43064 * 113.14033 * 293.21121 * 22 8 7 24 24 C 1.33849 * 118.77830 * 269.98280 * 6 5 4 25 25 O 1.21288 * 118.69198 * 2.39502 * 24 6 5 26 26 H 1.08997 * 109.47144 * 299.99833 * 1 2 3 27 27 H 1.08995 * 109.47204 * 60.00091 * 1 2 3 28 28 H 1.09003 * 109.46383 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47144 * 240.00167 * 2 1 3 30 30 H 1.08995 * 109.47204 * 119.99909 * 2 1 3 31 31 H 1.09001 * 109.47238 * 60.00368 * 4 3 2 32 32 H 1.09000 * 109.47178 * 299.99959 * 4 3 2 33 33 H 1.09007 * 109.46692 * 304.99919 * 5 4 3 34 34 H 1.08997 * 109.47125 * 184.99928 * 5 4 3 35 35 H 1.09001 * 109.39190 * 42.27992 * 7 6 5 36 36 H 1.09000 * 109.39393 * 282.56245 * 7 6 5 37 37 H 1.09001 * 110.74372 * 259.24236 * 9 8 7 38 38 H 1.08998 * 110.73797 * 22.57369 * 9 8 7 39 39 H 1.08998 * 110.65285 * 204.54549 * 10 9 8 40 40 H 1.08998 * 110.65679 * 81.44355 * 10 9 8 41 41 H 1.09002 * 109.46929 * 292.58437 * 12 11 10 42 42 H 1.08998 * 109.47035 * 172.59250 * 12 11 10 43 43 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 44 44 H 1.08999 * 109.97867 * 94.10935 * 21 11 10 45 45 H 1.08994 * 109.97679 * 215.35949 * 21 11 10 46 46 H 1.09003 * 109.41227 * 288.54656 * 23 22 8 47 47 H 1.08995 * 109.32503 * 168.76432 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 7 3.3877 3.5602 1.2524 7 6 4.2999 3.5590 2.3950 8 6 3.8546 4.5992 3.4165 9 6 4.6417 4.4238 4.7298 10 6 4.9003 5.8867 5.1736 11 7 5.1430 6.5950 3.8903 12 6 4.9288 8.0408 4.0384 13 6 5.7418 8.5528 5.1994 14 1 6.3565 7.8724 5.7699 15 6 5.7008 9.8899 5.5331 16 7 4.9519 10.7184 4.8387 17 14 6.7091 10.5248 6.9718 18 1 8.1490 10.2614 6.7216 19 1 6.2880 9.8315 8.2157 20 1 6.4925 11.9862 7.1215 21 6 4.1871 6.0136 2.9210 22 8 2.4560 4.4755 3.6641 23 6 1.6521 4.8146 2.5302 24 6 2.1679 4.1083 1.3080 25 8 1.4504 4.0323 0.3330 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8333 0.9769 -0.8908 32 1 3.8340 0.9766 0.8892 33 1 3.3490 3.4420 -0.8413 34 1 4.9080 3.0257 -0.0899 35 1 5.3078 3.7953 2.0537 36 1 4.2982 2.5725 2.8586 37 1 4.0426 3.8955 5.4715 38 1 5.5821 3.9030 4.5496 39 1 5.7787 5.9438 5.8165 40 1 4.0254 6.2956 5.6790 41 1 3.8719 8.2346 4.2214 42 1 5.2385 8.5494 3.1255 43 1 4.4285 10.3889 4.0914 44 1 3.2807 6.6178 2.8837 45 1 4.6429 5.9649 1.9321 46 1 1.6897 5.8919 2.3687 47 1 0.6215 4.5121 2.7153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:20 Heat of formation + Delta-G solvation = -133.653999 kcal Electronic energy + Delta-G solvation = -27578.487984 eV Core-core repulsion = 23760.805291 eV Total energy + Delta-G solvation = -3817.682693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25947 -40.13176 -38.88575 -37.92381 -36.61000 -35.31556 -33.01119 -32.47902 -30.76614 -29.87522 -29.14815 -27.79356 -26.18281 -24.79140 -24.07056 -23.67131 -22.26206 -21.91909 -19.55261 -19.19578 -18.60541 -18.04458 -17.52243 -17.21809 -17.03467 -16.85089 -16.39637 -15.96932 -15.65091 -15.52713 -15.47160 -14.96378 -14.90685 -14.59192 -14.15182 -14.04981 -13.87347 -13.63230 -13.46653 -13.44506 -12.93393 -12.85036 -12.78623 -12.71257 -12.53747 -12.27706 -12.25404 -12.11836 -11.96542 -11.92565 -11.86668 -11.46916 -10.75913 -10.62168 -10.56199 -10.39202 -9.80472 -9.35704 -8.72084 -6.43262 1.44484 1.53886 1.62551 1.75185 1.81435 2.45518 2.55568 2.80346 3.11160 3.16684 3.20024 3.42686 3.50977 3.66841 3.99362 4.03723 4.10828 4.15540 4.22951 4.27588 4.30038 4.36923 4.40696 4.42531 4.46680 4.48843 4.51766 4.62209 4.65262 4.75850 4.81658 4.83720 4.87589 4.93351 4.98722 5.07841 5.15469 5.21129 5.33823 5.57590 5.79429 5.87078 6.17392 6.25200 6.32413 6.37161 6.52479 6.99849 7.38955 8.67456 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.032346 B = 0.002906 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.437375 B = 9631.972039 C = 9777.028079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.403 6.403 4 C 0.045 3.955 5 C 0.108 3.892 6 N -0.599 5.599 7 C 0.106 3.894 8 C 0.094 3.906 9 C -0.093 4.093 10 C 0.051 3.949 11 N -0.509 5.509 12 C 0.186 3.814 13 C -0.602 4.602 14 H 0.065 0.935 15 C -0.039 4.039 16 N -0.938 5.938 17 Si 1.122 2.878 18 H -0.266 1.266 19 H -0.266 1.266 20 H -0.287 1.287 21 C 0.011 3.989 22 O -0.366 6.366 23 C 0.046 3.954 24 C 0.490 3.510 25 O -0.561 6.561 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.083 0.917 40 H 0.017 0.983 41 H -0.046 1.046 42 H -0.004 1.004 43 H 0.251 0.749 44 H 0.025 0.975 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 -24.415 -6.490 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 O -0.323 6.323 4 C -0.032 4.032 5 C -0.014 4.014 6 N -0.331 5.331 7 C -0.016 4.016 8 C 0.053 3.947 9 C -0.130 4.130 10 C -0.077 4.077 11 N -0.234 5.234 12 C 0.059 3.941 13 C -0.640 4.640 14 H 0.083 0.917 15 C -0.236 4.236 16 N -0.576 5.576 17 Si 0.942 3.058 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.212 1.212 21 C -0.118 4.118 22 O -0.285 6.285 23 C -0.033 4.033 24 C 0.278 3.722 25 O -0.440 6.440 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.140 0.860 39 H 0.101 0.899 40 H 0.036 0.964 41 H -0.029 1.029 42 H 0.014 0.986 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.020 -23.067 -6.143 23.893 hybrid contribution -1.528 -0.540 -1.202 2.017 sum -2.548 -23.608 -7.345 24.855 Atomic orbital electron populations 1.21722 0.93974 1.02934 1.01887 1.22579 0.95760 0.83468 1.00638 1.88112 1.21673 1.27048 1.95493 1.23011 0.81687 0.96754 1.01779 1.21810 1.01558 0.92036 0.86013 1.47496 1.14904 1.56654 1.14095 1.22213 0.94366 0.99967 0.85100 1.22396 0.81791 0.92973 0.97499 1.22538 1.00573 0.96015 0.93923 1.23056 0.99677 0.92950 0.92027 1.64798 1.46858 1.03986 1.07716 1.19687 0.92592 0.85820 0.95978 1.22324 1.29532 0.96589 1.15576 0.91682 1.27508 0.97990 0.94170 1.03953 1.70935 1.28184 1.38311 1.20144 0.82879 0.75086 0.75512 0.72282 1.19096 1.19121 1.21245 1.23544 0.94822 0.95235 0.98158 1.88120 1.16596 1.88502 1.35286 1.22829 0.97454 0.99735 0.83303 1.20881 0.82141 0.79020 0.90160 1.90719 1.55844 1.59741 1.37684 0.93528 0.93073 0.88934 0.92259 0.92883 0.90422 0.92020 0.91090 0.85341 0.86885 0.88177 0.88097 0.86038 0.89905 0.96409 1.02866 0.98648 0.93943 0.95639 0.89905 0.90223 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 0.89 6.66 71.98 0.48 1.37 16 3 O -0.40 -9.67 8.86 -135.52 -1.20 -10.87 16 4 C 0.05 0.75 6.28 71.98 0.45 1.20 16 5 C 0.11 2.01 5.80 86.38 0.50 2.51 16 6 N -0.60 -13.91 2.79 -825.55 -2.31 -16.21 16 7 C 0.11 2.04 5.03 86.25 0.43 2.47 16 8 C 0.09 2.49 0.96 -10.43 -0.01 2.48 16 9 C -0.09 -2.28 6.32 31.67 0.20 -2.08 16 10 C 0.05 1.85 5.55 86.68 0.48 2.33 16 11 N -0.51 -21.37 5.40 -887.85 -4.79 -26.16 16 12 C 0.19 9.96 4.10 85.55 0.35 10.31 16 13 C -0.60 -33.93 8.56 25.60 0.22 -33.71 16 14 H 0.06 3.51 6.53 -2.91 -0.02 3.49 16 15 C -0.04 -2.25 5.46 84.66 0.46 -1.78 16 16 N -0.94 -58.67 13.65 21.45 0.29 -58.37 16 17 Si 1.12 49.60 29.90 68.60 2.05 51.65 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 21 C 0.01 0.39 5.38 86.26 0.46 0.85 16 22 O -0.37 -10.71 10.34 -148.98 -1.54 -12.25 16 23 C 0.05 1.31 6.42 71.11 0.46 1.76 16 24 C 0.49 14.59 7.08 87.67 0.62 15.21 16 25 O -0.56 -20.22 15.31 10.41 0.16 -20.06 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.69 7.30 -2.38 -0.02 1.67 16 34 H 0.13 1.45 7.94 -2.39 -0.02 1.43 16 35 H 0.11 1.76 7.86 -2.39 -0.02 1.74 16 36 H 0.10 1.49 8.11 -2.39 -0.02 1.47 16 37 H 0.10 2.21 8.06 -2.39 -0.02 2.19 16 38 H 0.12 2.23 7.85 -2.39 -0.02 2.21 16 39 H 0.08 3.03 7.16 -2.39 -0.02 3.02 16 40 H 0.02 0.73 8.01 -2.39 -0.02 0.72 16 41 H -0.05 -2.69 7.68 -2.39 -0.02 -2.71 16 42 H 0.00 -0.26 8.01 -2.39 -0.02 -0.28 16 43 H 0.25 16.06 7.22 -92.70 -0.67 15.39 16 44 H 0.03 1.01 5.61 -2.39 -0.01 0.99 16 45 H 0.08 2.73 7.62 -2.39 -0.02 2.71 16 46 H 0.08 2.42 6.53 -2.39 -0.02 2.40 16 47 H 0.14 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -76.81 368.10 -0.44 -77.25 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.04 Total: 13.89 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 5.85 Total: 1.13 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -6.80 Total: -100.75 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -2.58 Total: -43.17 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.65 kcal Total: -76.81 -0.44 -77.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.408 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds