Wall clock time and date at job start Fri Apr 10 2020 18:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00010 * 2 1 4 4 H 1.48504 * 109.47053 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.46813 * 29.99597 * 3 2 1 6 6 H 1.48496 * 109.47254 * 150.00172 * 3 2 1 7 7 C 1.37878 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99946 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99797 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.33665 * 120.68179 * 271.04984 * 10 9 7 12 12 O 1.21716 * 126.94085 * 359.20584 * 11 10 9 13 13 S 1.77150 * 106.11214 * 179.89732 * 11 10 9 14 14 C 1.76892 * 94.69435 * 359.32768 * 13 11 10 15 15 C 1.38342 * 132.36585 * 180.02562 * 14 13 11 16 16 C 1.38215 * 119.91090 * 179.67201 * 15 14 13 17 17 Br 1.89097 * 120.29211 * 180.29902 * 16 15 14 18 18 C 1.38534 * 119.41431 * 0.28008 * 16 15 14 19 19 C 1.37496 * 120.82556 * 0.02562 * 18 16 15 20 20 C 1.38369 * 120.68537 * 89.99813 * 10 9 7 21 21 H 0.97004 * 120.00368 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47993 * 59.99600 * 9 7 2 23 23 H 1.08999 * 109.47068 * 299.99003 * 9 7 2 24 24 H 1.08002 * 120.04771 * 359.95404 * 15 14 13 25 25 H 1.07999 * 119.58263 * 179.97438 * 18 16 15 26 26 H 1.08002 * 119.62094 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.2069 -3.2255 1.1492 12 8 4.0453 -2.7913 2.2748 13 16 4.7835 -4.8401 0.7035 14 6 4.6926 -4.5503 -1.0392 15 6 4.9824 -5.3463 -2.1330 16 6 4.8081 -4.8509 -3.4114 17 35 5.1928 -5.9323 -4.9142 18 6 4.3486 -3.5551 -3.5822 19 6 4.0657 -2.7592 -2.4973 20 6 4.2357 -3.2407 -1.1901 21 1 -0.4851 0.8400 -0.0004 22 1 3.8746 -0.6807 0.8904 23 1 3.8751 -0.6797 -0.8895 24 1 5.3400 -6.3551 -1.9881 25 1 4.2119 -3.1651 -4.5799 26 1 3.7089 -1.7517 -2.6529 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034260854.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:00 Heat of formation + Delta-G solvation = -8.188653 kcal Electronic energy + Delta-G solvation = -15505.618124 eV Core-core repulsion = 12721.359326 eV Total energy + Delta-G solvation = -2784.258798 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 312.951 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.01636 -39.86331 -37.48995 -35.08081 -32.90987 -32.54837 -30.99646 -29.38071 -26.36858 -24.32259 -23.60137 -21.99845 -20.18717 -19.37144 -18.28173 -17.61787 -17.10982 -16.96467 -16.24005 -15.86422 -15.36790 -15.14405 -14.67615 -14.58592 -13.93983 -13.73764 -13.57605 -12.90996 -12.71376 -12.53482 -12.17663 -12.10256 -11.88368 -11.27375 -11.23906 -11.15767 -10.95908 -10.90964 -9.40260 -9.03098 -8.43548 -6.55008 -0.35816 -0.33879 -0.02175 0.37845 0.66737 0.96863 1.30765 1.35137 1.44312 1.77894 2.23871 2.33859 2.89292 3.28887 3.78669 3.99528 4.05109 4.31896 4.47107 4.51748 4.70333 4.77195 5.01301 5.07321 5.18723 5.38401 5.80761 5.98225 6.25146 6.46959 7.09239 8.72724 Molecular weight = 312.95amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.004768 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.622120 B = 5870.992968 C = 6987.501353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.025 3.975 3 Si 0.945 3.055 4 H -0.243 1.243 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.553 4.553 8 H 0.028 0.972 9 C 0.211 3.789 10 N -0.523 5.523 11 C 0.503 3.497 12 O -0.502 6.502 13 S 0.011 5.989 14 C -0.163 4.163 15 C -0.009 4.009 16 C -0.105 4.105 17 Br -0.019 7.019 18 C -0.042 4.042 19 C -0.113 4.113 20 C 0.140 3.860 21 H 0.274 0.726 22 H 0.042 0.958 23 H 0.072 0.928 24 H 0.168 0.832 25 H 0.172 0.828 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.074 -10.698 -13.362 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.167 1.167 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.591 4.591 8 H 0.046 0.954 9 C 0.088 3.912 10 N -0.242 5.242 11 C 0.184 3.816 12 O -0.382 6.382 13 S 0.254 5.746 14 C -0.280 4.280 15 C -0.034 4.034 16 C -0.188 4.188 17 Br 0.066 6.934 18 C -0.064 4.064 19 C -0.135 4.135 20 C 0.034 3.966 21 H 0.083 0.917 22 H 0.060 0.940 23 H 0.090 0.910 24 H 0.186 0.814 25 H 0.189 0.811 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.321 -11.735 -12.346 22.254 hybrid contribution -0.966 2.126 0.230 2.347 sum 13.355 -9.609 -12.116 20.432 Atomic orbital electron populations 1.70021 1.08314 1.28907 1.49905 1.25788 0.95644 1.03206 0.92943 0.85764 0.79271 0.77882 0.80499 1.16700 1.20516 1.17490 1.21204 0.90154 0.93761 1.53970 0.95356 1.19922 0.94320 0.77244 0.99728 1.45967 1.57562 1.16416 1.04214 1.22300 0.82089 0.91050 0.86123 1.90853 1.55882 1.70577 1.20932 1.85317 1.75216 1.15221 0.98843 1.21722 1.13097 0.96273 0.96942 1.20264 0.95869 0.99606 0.87615 1.21648 1.08497 0.96243 0.92408 1.96734 1.93769 1.66711 1.36138 1.21087 0.94320 0.91246 0.99781 1.20837 1.02500 1.02376 0.87794 1.18423 0.98621 0.91782 0.87727 0.91716 0.94007 0.90975 0.81425 0.81070 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.96 21.45 0.30 -55.95 15 2 C 0.02 1.37 5.47 84.66 0.46 1.83 15 3 Si 0.94 40.70 27.47 68.60 1.88 42.59 15 4 H -0.24 -9.42 7.11 99.48 0.71 -8.71 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.25 -10.27 6.54 99.48 0.65 -9.61 15 7 C -0.55 -31.06 9.94 25.60 0.25 -30.81 15 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 15 9 C 0.21 9.77 4.12 85.63 0.35 10.12 15 10 N -0.52 -22.15 2.62 -646.85 -1.69 -23.85 15 11 C 0.50 21.89 8.44 129.96 1.10 22.99 15 12 O -0.50 -25.16 17.47 -4.40 -0.08 -25.23 15 13 S 0.01 0.37 23.15 -56.49 -1.31 -0.94 15 14 C -0.16 -4.85 6.59 22.61 0.15 -4.70 15 15 C -0.01 -0.21 9.81 22.29 0.22 0.01 15 16 C -0.11 -2.21 6.23 22.33 0.14 -2.07 15 17 Br -0.02 -0.31 33.72 -20.37 -0.69 -1.00 15 18 C -0.04 -0.93 9.73 22.17 0.22 -0.72 15 19 C -0.11 -3.27 9.47 22.61 0.21 -3.06 15 20 C 0.14 4.87 6.59 38.93 0.26 5.13 15 21 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 22 H 0.04 2.02 6.82 -2.39 -0.02 2.01 15 23 H 0.07 2.89 6.34 -2.39 -0.02 2.88 15 24 H 0.17 2.86 8.06 -2.91 -0.02 2.84 15 25 H 0.17 2.72 8.06 -2.91 -0.02 2.70 15 26 H 0.15 4.23 7.07 -2.91 -0.02 4.20 15 Total: -1.00 -67.41 268.26 2.95 -64.46 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.17 Total: 1.21 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 3.36 Total: -1.28 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -1.39 Total: -79.80 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.08 Total: -25.23 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.88 Total: 42.59 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.31 Total: -0.94 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -0.69 Total: -1.00 kcal Total: -67.41 2.95 -64.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034260854.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.270 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds