Wall clock time and date at job start Fri Apr 10 2020 18:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47301 * 2 1 4 4 O 1.42901 * 109.47312 * 119.99812 * 2 1 3 5 5 C 1.53000 * 109.47196 * 239.99784 * 2 1 3 6 6 H 1.09001 * 109.47278 * 305.67954 * 5 2 1 7 7 N 1.46503 * 109.46953 * 65.67886 * 5 2 1 8 8 C 1.34770 * 120.00192 * 275.00159 * 7 5 2 9 9 O 1.21286 * 120.00142 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00382 * 180.02562 * 8 7 5 11 11 C 1.55237 * 110.46506 * 294.80711 * 10 8 7 12 12 C 1.54887 * 102.58796 * 203.39412 * 11 10 8 13 13 C 1.54262 * 104.31401 * 37.93009 * 12 11 10 14 14 C 1.53877 * 106.59879 * 336.32769 * 13 12 11 15 15 C 1.50699 * 109.47039 * 185.67849 * 5 2 1 16 16 O 1.21284 * 120.00264 * 277.37524 * 15 5 2 17 17 N 1.34774 * 119.99868 * 97.37826 * 15 5 2 18 18 C 1.46495 * 120.00209 * 353.63869 * 17 15 5 19 19 C 1.46505 * 119.99953 * 173.64053 * 17 15 5 20 20 C 1.50707 * 109.46961 * 89.99652 * 19 17 15 21 21 H 1.07999 * 119.99964 * 0.02562 * 20 19 17 22 22 C 1.37875 * 119.99744 * 179.97438 * 20 19 17 23 23 N 1.31508 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99812 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47212 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46967 * 120.00553 * 24 22 20 27 27 H 1.48502 * 109.47333 * 240.00631 * 24 22 20 28 28 H 1.08991 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47039 * 300.00267 * 1 2 3 30 30 H 1.09002 * 109.46920 * 59.99948 * 1 2 3 31 31 H 0.96697 * 114.00570 * 186.43912 * 4 2 1 32 32 H 0.97002 * 119.99571 * 95.00123 * 7 5 2 33 33 H 1.09002 * 110.43418 * 57.45349 * 10 8 7 34 34 H 1.09004 * 110.90122 * 85.09872 * 11 10 8 35 35 H 1.09004 * 110.76480 * 321.62455 * 11 10 8 36 36 H 1.09002 * 110.48574 * 279.18404 * 12 11 10 37 37 H 1.09004 * 110.49072 * 156.67689 * 12 11 10 38 38 H 1.09005 * 110.03185 * 95.60912 * 13 12 11 39 39 H 1.09000 * 110.03629 * 216.99311 * 13 12 11 40 40 H 1.08994 * 110.03638 * 119.28395 * 14 13 12 41 41 H 1.09000 * 110.02784 * 240.66959 * 14 13 12 42 42 H 1.09002 * 109.47063 * 84.71052 * 18 17 15 43 43 H 1.09003 * 109.47448 * 204.70930 * 18 17 15 44 44 H 1.09002 * 109.46988 * 324.70846 * 18 17 15 45 45 H 1.09005 * 109.47200 * 209.99663 * 19 17 15 46 46 H 1.08995 * 109.47486 * 330.00094 * 19 17 15 47 47 H 0.97004 * 120.00163 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 1 1.5960 -1.7154 -1.3015 7 7 1.6664 0.0437 -2.4415 8 6 0.4505 -0.1260 -2.9975 9 8 -0.3343 -0.9125 -2.5111 10 6 0.0664 0.6604 -4.2243 11 6 -0.0105 2.1756 -3.8956 12 6 -0.9588 2.7121 -4.9964 13 6 -2.0158 1.6011 -5.1639 14 6 -1.3639 0.2966 -4.6729 15 6 3.5404 -0.8442 -1.1809 16 8 4.2412 0.0847 -1.5230 17 7 4.1035 -1.9864 -0.7396 18 6 3.2624 -3.0555 -0.1961 19 6 5.5570 -2.1587 -0.8035 20 6 6.1792 -1.6550 0.4733 21 1 5.5544 -1.2476 1.2544 22 6 7.5460 -1.7152 0.6446 23 7 8.3066 -2.2117 -0.3063 24 14 8.3172 -1.0914 2.2276 25 1 7.2526 -0.5862 3.1313 26 1 9.0461 -2.2005 2.8936 27 1 9.2657 0.0080 1.9164 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.9650 -0.6269 1.2841 32 1 2.2943 0.6724 -2.8307 33 1 0.7771 0.4789 -5.0306 34 1 0.9724 2.6406 -3.9721 35 1 -0.4384 2.3351 -2.9058 36 1 -0.4142 2.8642 -5.9282 37 1 -1.4296 3.6412 -4.6749 38 1 -2.8954 1.8287 -4.5617 39 1 -2.2961 1.5074 -6.2131 40 1 -1.9271 -0.1090 -3.8325 41 1 -1.3279 -0.4309 -5.4838 42 1 2.8874 -3.6732 -1.0122 43 1 3.8511 -3.6707 0.4843 44 1 2.4227 -2.6180 0.3440 45 1 5.7924 -3.2155 -0.9302 46 1 5.9531 -1.5946 -1.6479 47 1 9.2683 -2.2537 -0.1859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412480291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:16 Heat of formation + Delta-G solvation = -135.419240 kcal Electronic energy + Delta-G solvation = -27617.499570 eV Core-core repulsion = 23799.740331 eV Total energy + Delta-G solvation = -3817.759240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70456 -39.31216 -37.40943 -36.74683 -35.14929 -34.30096 -32.66627 -31.12210 -29.46507 -28.92968 -28.37896 -26.87339 -25.60934 -23.03940 -22.42809 -21.11876 -20.63691 -19.93991 -18.78246 -17.84274 -17.37882 -16.70995 -16.32307 -16.25863 -15.69485 -15.45513 -15.12632 -14.62939 -14.54268 -13.89526 -13.76157 -13.61881 -13.57291 -12.97704 -12.62455 -12.37523 -12.23675 -12.13691 -12.04668 -11.98147 -11.77276 -11.53277 -11.41915 -11.36325 -11.28134 -11.15096 -11.00254 -10.93194 -10.67522 -10.65335 -10.25151 -10.20528 -9.78234 -9.70027 -9.27803 -8.83195 -8.50712 -7.79059 -6.11575 -4.16891 2.54168 2.80503 3.23136 3.26178 3.34202 3.38415 3.83838 4.22890 4.30615 4.37454 4.38315 4.53535 4.78194 4.89380 5.01005 5.11833 5.13702 5.20782 5.23486 5.25927 5.31259 5.40031 5.45657 5.58790 5.61172 5.67890 5.78040 5.82563 5.90382 5.91750 5.93946 6.01694 6.04833 6.12166 6.28504 6.31590 6.36806 6.91123 7.29683 7.37344 7.48111 7.67745 7.84268 8.12662 8.14085 8.23643 8.71547 8.89655 9.48517 10.96591 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.003295 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.579889 B = 8495.373394 C = 8806.070590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.103 3.897 3 H 0.061 0.939 4 O -0.559 6.559 5 C 0.093 3.907 6 H 0.111 0.889 7 N -0.706 5.706 8 C 0.521 3.479 9 O -0.535 6.535 10 C -0.114 4.114 11 C -0.115 4.115 12 C -0.123 4.123 13 C -0.125 4.125 14 C -0.112 4.112 15 C 0.494 3.506 16 O -0.535 6.535 17 N -0.590 5.590 18 C 0.067 3.933 19 C 0.245 3.755 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.386 0.614 32 H 0.410 0.590 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.042 0.958 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.541 6.091 -7.430 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.043 3.957 3 H 0.079 0.921 4 O -0.366 6.366 5 C -0.016 4.016 6 H 0.129 0.871 7 N -0.361 5.361 8 C 0.307 3.693 9 O -0.412 6.412 10 C -0.135 4.135 11 C -0.153 4.153 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.149 4.149 15 C 0.279 3.721 16 O -0.412 6.412 17 N -0.322 5.322 18 C -0.077 4.077 19 C 0.126 3.874 20 C -0.565 4.565 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.727 3.273 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.235 0.765 32 H 0.246 0.754 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.138 5.801 -7.205 21.257 hybrid contribution 1.636 0.550 0.530 1.806 sum -17.502 6.351 -6.675 19.779 Atomic orbital electron populations 1.21807 0.92049 1.03555 1.01649 1.22032 0.95813 0.94782 0.83123 0.92110 1.86452 1.28720 1.77732 1.43671 1.21801 0.94124 0.98575 0.87101 0.87127 1.45740 1.16899 1.44399 1.29053 1.20541 0.81118 0.82644 0.84955 1.90692 1.50335 1.36672 1.63455 1.22240 0.99663 0.95861 0.95777 1.22571 1.00565 0.92531 0.99654 1.22348 0.96811 0.98236 0.98698 1.22151 0.98397 0.94566 1.01116 1.22069 0.93614 0.97414 1.01845 1.20259 0.88747 0.83568 0.79552 1.90692 1.63618 1.37536 1.49378 1.48204 1.10222 1.14597 1.59153 1.21946 0.95934 0.91178 0.98629 1.19377 0.72182 0.97519 0.98360 1.21405 0.92063 1.41403 1.01618 0.92309 1.24938 0.97058 0.95140 0.96953 1.69935 1.05152 1.45393 1.32796 0.86429 0.79296 0.78538 0.83077 1.19692 1.20946 1.20909 0.91231 0.92533 0.91143 0.76486 0.75366 0.88057 0.90553 0.90862 0.91346 0.91405 0.91716 0.91778 0.89653 0.91514 0.93809 0.90200 0.90418 0.94680 0.94008 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.18 37.16 0.30 -1.50 16 2 C 0.10 1.53 3.41 -26.73 -0.09 1.44 16 3 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 4 O -0.56 -8.86 11.04 -35.23 -0.39 -9.25 16 5 C 0.09 1.45 1.81 -69.08 -0.12 1.32 16 6 H 0.11 1.77 6.06 -51.93 -0.31 1.45 16 7 N -0.71 -9.50 5.01 -54.93 -0.28 -9.78 16 8 C 0.52 6.55 5.73 -10.99 -0.06 6.49 16 9 O -0.53 -8.03 12.56 5.55 0.07 -7.96 16 10 C -0.11 -1.08 3.26 -89.93 -0.29 -1.37 16 11 C -0.12 -0.93 6.34 -24.55 -0.16 -1.08 16 12 C -0.12 -0.84 6.82 -25.08 -0.17 -1.01 16 13 C -0.12 -0.90 6.80 -25.61 -0.17 -1.07 16 14 C -0.11 -1.01 6.19 -25.61 -0.16 -1.16 16 15 C 0.49 9.62 5.70 -10.99 -0.06 9.56 16 16 O -0.53 -12.21 15.93 5.55 0.09 -12.13 16 17 N -0.59 -11.95 2.77 -182.95 -0.51 -12.46 16 18 C 0.07 1.09 9.37 59.84 0.56 1.65 16 19 C 0.24 6.14 5.09 -5.19 -0.03 6.11 16 20 C -0.53 -14.26 9.39 -34.44 -0.32 -14.58 16 21 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 24 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.92 5.63 -51.93 -0.29 0.63 16 31 H 0.39 6.33 7.99 45.56 0.36 6.69 16 32 H 0.41 5.32 7.98 -40.82 -0.33 4.99 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.92 6.85 -51.93 -0.36 0.56 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.31 8.03 -51.93 -0.42 0.90 16 44 H 0.08 1.17 4.91 -51.93 -0.26 0.92 16 45 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 46 H 0.04 1.18 7.52 -51.93 -0.39 0.79 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -31.40 371.51 -7.58 -38.98 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.01 Total: 9.49 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -0.88 Total: 6.40 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.04 Total: -47.43 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.23 Total: -29.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.40 -7.58 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412480291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.441 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds